Allen R Buskirk

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 29

Top Topics

Bacillus Subtilis

Endoplasmic Reticulum

Quality Control

Top Venues

The EMBO journal

Journal of bacteriology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Hiraku Takada, Helge Paternoga, Keigo Fujiwara, Jose A Nakamoto, Esther N Park, Lyudmila Dimitrova-Paternoga, Bertrand Beckert, Merilin Saarma, Tanel Tenson, Allen R Buskirk, Gemma C Atkinson, Shinobu Chiba, Daniel N Wilson, Vasili Hauryliuk
A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis. Nucleic acids research 52 (14) (2024)
Bin Shao, Jiawei Yan, Jing Zhang, Lili Liu, Ye Chen, Allen R Buskirk
Riboformer: a deep learning framework for predicting context-dependent translation dynamics. Nature communications 15 (1) (2024)
Hiraku Takada, Helge Paternoga, Keigo Fujiwara, Jose A Nakamoto, Esther N Park, Lyudmila Dimitrova-Paternoga, Bertrand Beckert, Merilin Saarma, Tanel Tenson, Allen R Buskirk, Gemma C Atkinson, Shinobu Chiba, Daniel N Wilson, Vasili Hauryliuk
A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis. Nucleic acids research 52 (14) (2024)
Bin Shao, Jiawei Yan, Jing Zhang, Lili Liu, Ye Chen, Allen R Buskirk
Riboformer: a deep learning framework for predicting context-dependent translation dynamics. Nature communications 15 (1) (2024)
Bin Shao, Jiawei Yan, Jing Zhang, Lili Liu, Ye Chen, Allen R Buskirk
Riboformer: a deep learning framework for predicting context-dependent translation dynamics. Nature communications 15 (1) (2024)
Hiraku Takada, Helge Paternoga, Keigo Fujiwara, Jose A Nakamoto, Esther N Park, Lyudmila Dimitrova-Paternoga, Bertrand Beckert, Merilin Saarma, Tanel Tenson, Allen R Buskirk, Gemma C Atkinson, Shinobu Chiba, Daniel N Wilson, Vasili Hauryliuk
A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis. Nucleic acids research 52 (14) (2024)
Bin Shao, Jiawei Yan, Jing Zhang, Lili Liu, Ye Chen, Allen R Buskirk
Riboformer: a deep learning framework for predicting context-dependent translation dynamics. Nature communications 15 (1) (2024)
Hiraku Takada, Helge Paternoga, Keigo Fujiwara, Jose A Nakamoto, Esther N Park, Lyudmila Dimitrova-Paternoga, Bertrand Beckert, Merilin Saarma, Tanel Tenson, Allen R Buskirk, Gemma C Atkinson, Shinobu Chiba, Daniel N Wilson, Vasili Hauryliuk
A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis. Nucleic acids research (2024)
Bin Shao, Jiawei Yan, Jing Zhang, Allen R Buskirk
Riboformer: A Deep Learning Framework for Predicting Context-Dependent Translation Dynamics. bioRxiv : the preprint server for biology (2023)
Esther N Park, Timur Mackens-Kiani, Rebekah Berhane, Hanna Esser, Chimeg Erdenebat, A Maxwell Burroughs, Otto Berninghausen, L Aravind, Roland Beckmann, Rachel Green, Allen R Buskirk
B. subtilis MutS2 splits stalled ribosomes into subunits without mRNA cleavage. The EMBO journal (2023)
Bin Shao, Jiawei Yan, Jing Zhang, Allen R Buskirk
Riboformer: A Deep Learning Framework for Predicting Context-Dependent Translation Dynamics. bioRxiv : the preprint server for biology (2023)
Esther N Park, Timur Mackens-Kiani, Rebekah Berhane, Hanna Esser, Chimeg Erdenebat, A Maxwell Burroughs, Otto Berninghausen, L Aravind, Roland Beckmann, Rachel Green, Allen R Buskirk
B. subtilis MutS2 splits stalled ribosomes into subunits without mRNA cleavage. The EMBO journal (2023)
Heather A Feaga, Hye-Rim Hong, Cassidy R Prince, Ananda Rankin, Allen R Buskirk, Jonathan Dworkin
Elongation Factor P Is Important for Sporulation Initiation. Journal of bacteriology (2023)
Heather A Feaga, Hye-Rim Hong, Cassidy R Prince, Ananda Rankin, Allen R Buskirk, Jonathan Dworkin
Elongation Factor P Is Important for Sporulation Initiation. Journal of bacteriology (2023)
Esther N Park, Timur Mackens-Kiani, Rebekah Berhane, Hanna Esser, Chimeg Erdenebat, A Maxwell Burroughs, Otto Berninghausen, L Aravind, Roland Beckmann, Rachel Green, Allen R Buskirk
B. subtilis MutS2 splits stalled ribosomes into subunits without mRNA cleavage. The EMBO journal (2023)
Heather A Feaga, Hye-Rim Hong, Cassidy R Prince, Ananda Rankin, Allen R Buskirk, Jonathan Dworkin
Elongation Factor P Is Important for Sporulation Initiation. Journal of bacteriology 205 (2) (2023)
Esther N Park, Timur Mackens-Kiani, Rebekah Berhane, Hanna Esser, Chimeg Erdenebat, A Maxwell Burroughs, Otto Berninghausen, L Aravind, Roland Beckmann, Rachel Green, Allen R Buskirk
B. subtilis MutS2 splits stalled ribosomes into subunits without mRNA cleavage. The EMBO journal 43 (4) (2023)
Heather A Feaga, Hye-Rim Hong, Cassidy R Prince, Ananda Rankin, Allen R Buskirk, Jonathan Dworkin
Elongation Factor P Is Important for Sporulation Initiation. Journal of bacteriology (2023)
Heather A Feaga, Hye-Rim Hong, Cassidy R Prince, Ananda Rankin, Allen R Buskirk, Jonathan Dworkin
Elongation Factor P Is Important for Sporulation Initiation. Journal of bacteriology 205 (2) (2023)
Esther N Park, Timur Mackens-Kiani, Rebekah Berhane, Hanna Esser, Chimeg Erdenebat, A Maxwell Burroughs, Otto Berninghausen, L Aravind, Roland Beckmann, Rachel Green, Allen R Buskirk
B. subtilis MutS2 splits stalled ribosomes into subunits without mRNA cleavage. The EMBO journal 43 (4) (2023)
Bin Shao, Jiawei Yan, Jing Zhang, Allen R Buskirk
Riboformer: A Deep Learning Framework for Predicting Context-Dependent Translation Dynamics. bioRxiv : the preprint server for biology (2023)
Esther N Park, Timur Mackens-Kiani, Rebekah Berhane, Hanna Esser, Chimeg Erdenebat, A Maxwell Burroughs, Otto Berninghausen, L Aravind, Roland Beckmann, Rachel Green, Allen R Buskirk
B. subtilis MutS2 splits stalled ribosomes into subunits without mRNA cleavage. The EMBO journal 43 (4) (2023)
Esther N Park, Timur Mackens-Kiani, Rebekah Berhane, Hanna Esser, Chimeg Erdenebat, A Maxwell Burroughs, Otto Berninghausen, L Aravind, Roland Beckmann, Rachel Green, Allen R Buskirk
B. subtilis MutS2 splits stalled ribosomes into subunits without mRNA cleavage. The EMBO journal (2023)
Heather A Feaga, Hye-Rim Hong, Cassidy R Prince, Ananda Rankin, Allen R Buskirk, Jonathan Dworkin
Elongation Factor P Is Important for Sporulation Initiation. Journal of bacteriology 205 (2) (2023)
Kazuki Saito, Hanna Kratzat, Annabelle Campbell, Robert Buschauer, A Maxwell Burroughs, Otto Berninghausen, L Aravind, Rachel Green, Roland Beckmann, Allen R Buskirk
Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria. Nature 603 (7901) (2022)
Isao Masuda, Jae-Yeon Hwang, Thomas Christian, Sunita Maharjan, Fuad Mohammad, Howard Gamper, Allen R Buskirk, Ya-Ming Hou
Loss of N1-methylation of G37 in tRNA induces ribosome stalling and reprograms gene expression. eLife 10 (2021)
Kazuki Saito, Rachel Green, Allen R Buskirk
Translational initiation in E. coli occurs at the correct sites genome-wide in the absence of mRNA-rRNA base-pairing. eLife 9 (2020)
Kazuki Saito, Rachel Green, Allen R Buskirk
Ribosome recycling is not critical for translational coupling in Escherichia coli. eLife 9 (2020)
Fuad Mohammad, Rachel Green, Allen R Buskirk
A systematically-revised ribosome profiling method for bacteria reveals pauses at single-codon resolution. eLife 8 (2019)