Shinobu Chiba

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 33

Top Topics

Molecular Dynamics Simulations

Bacillus Subtilis

Quality Control

Top Venues

Nature communications

Nucleic acids research

RNA (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Martino Morici, Sara Gabrielli, Keigo Fujiwara, Helge Paternoga, Bertrand Beckert, Lars V Bock, Shinobu Chiba, Daniel N Wilson
RAPP-containing arrest peptides induce translational stalling by short circuiting the ribosomal peptidyltransferase activity. Nature communications 15 (1) (2024)
Felix Gersteuer, Martino Morici, Sara Gabrielli, Keigo Fujiwara, Haaris A Safdari, Helge Paternoga, Lars V Bock, Shinobu Chiba, Daniel N Wilson
Publisher Correction: The SecM arrest peptide traps a pre-peptide bond formation state of the ribosome. Nature communications 15 (1) (2024)
Martino Morici, Sara Gabrielli, Keigo Fujiwara, Helge Paternoga, Bertrand Beckert, Lars V Bock, Shinobu Chiba, Daniel N Wilson
RAPP-containing arrest peptides induce translational stalling by short circuiting the ribosomal peptidyltransferase activity. Nature communications 15 (1) (2024)
Martino Morici, Sara Gabrielli, Keigo Fujiwara, Helge Paternoga, Bertrand Beckert, Lars V Bock, Shinobu Chiba, Daniel N Wilson
RAPP-containing arrest peptides induce translational stalling by short circuiting the ribosomal peptidyltransferase activity. Nature communications 15 (1) (2024)
Felix Gersteuer, Martino Morici, Sara Gabrielli, Keigo Fujiwara, Haaris A Safdari, Helge Paternoga, Lars V Bock, Shinobu Chiba, Daniel N Wilson
The SecM arrest peptide traps a pre-peptide bond formation state of the ribosome. Nature communications 15 (1) (2024)
Felix Gersteuer, Martino Morici, Sara Gabrielli, Keigo Fujiwara, Haaris A Safdari, Helge Paternoga, Lars V Bock, Shinobu Chiba, Daniel N Wilson
The SecM arrest peptide traps a pre-peptide bond formation state of the ribosome. Nature communications 15 (1) (2024)
Keigo Fujiwara, Naoko Tsuji, Mayu Yoshida, Hiraku Takada, Shinobu Chiba
Patchy and widespread distribution of bacterial translation arrest peptides associated with the protein localization machinery. Nature communications 15 (1) (2024)
Felix Gersteuer, Martino Morici, Sara Gabrielli, Keigo Fujiwara, Haaris A Safdari, Helge Paternoga, Lars V Bock, Shinobu Chiba, Daniel N Wilson
Publisher Correction: The SecM arrest peptide traps a pre-peptide bond formation state of the ribosome. Nature communications 15 (1) (2024)
Felix Gersteuer, Martino Morici, Sara Gabrielli, Keigo Fujiwara, Haaris A Safdari, Helge Paternoga, Lars V Bock, Shinobu Chiba, Daniel N Wilson
The SecM arrest peptide traps a pre-peptide bond formation state of the ribosome. Nature communications 15 (1) (2024)
Hiraku Takada, Helge Paternoga, Keigo Fujiwara, Jose A Nakamoto, Esther N Park, Lyudmila Dimitrova-Paternoga, Bertrand Beckert, Merilin Saarma, Tanel Tenson, Allen R Buskirk, Gemma C Atkinson, Shinobu Chiba, Daniel N Wilson, Vasili Hauryliuk
A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis. Nucleic acids research 52 (14) (2024)
Hiraku Takada, Helge Paternoga, Keigo Fujiwara, Jose A Nakamoto, Esther N Park, Lyudmila Dimitrova-Paternoga, Bertrand Beckert, Merilin Saarma, Tanel Tenson, Allen R Buskirk, Gemma C Atkinson, Shinobu Chiba, Daniel N Wilson, Vasili Hauryliuk
A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis. Nucleic acids research 52 (14) (2024)
Felix Gersteuer, Martino Morici, Sara Gabrielli, Keigo Fujiwara, Haaris A Safdari, Helge Paternoga, Lars V Bock, Shinobu Chiba, Daniel N Wilson
The SecM arrest peptide traps a pre-peptide bond formation state of the ribosome. Nature communications 15 (1) (2024)
Felix Gersteuer, Martino Morici, Sara Gabrielli, Keigo Fujiwara, Haaris A Safdari, Helge Paternoga, Lars V Bock, Shinobu Chiba, Daniel N Wilson
The SecM arrest peptide traps a pre-peptide bond formation state of the ribosome. Nature communications 15 (1) (2024)
Martino Morici, Sara Gabrielli, Keigo Fujiwara, Helge Paternoga, Bertrand Beckert, Lars V Bock, Shinobu Chiba, Daniel N Wilson
RAPP-containing arrest peptides induce translational stalling by short circuiting the ribosomal peptidyltransferase activity. Nature communications 15 (1) (2024)
Felix Gersteuer, Martino Morici, Sara Gabrielli, Keigo Fujiwara, Haaris A Safdari, Helge Paternoga, Lars V Bock, Shinobu Chiba, Daniel N Wilson
The SecM arrest peptide traps a pre-peptide bond formation state of the ribosome. Nature communications 15 (1) (2024)
Martino Morici, Sara Gabrielli, Keigo Fujiwara, Helge Paternoga, Bertrand Beckert, Lars V Bock, Shinobu Chiba, Daniel N Wilson
RAPP-containing arrest peptides induce translational stalling by short circuiting the ribosomal peptidyltransferase activity. Nature communications 15 (1) (2024)
Keigo Fujiwara, Naoko Tsuji, Mayu Yoshida, Hiraku Takada, Shinobu Chiba
Patchy and widespread distribution of bacterial translation arrest peptides associated with the protein localization machinery. Nature communications 15 (1) (2024)
Felix Gersteuer, Martino Morici, Sara Gabrielli, Keigo Fujiwara, Haaris A Safdari, Helge Paternoga, Lars V Bock, Shinobu Chiba, Daniel N Wilson
The SecM arrest peptide traps a pre-peptide bond formation state of the ribosome. Nature communications 15 (1) (2024)
Martino Morici, Sara Gabrielli, Keigo Fujiwara, Helge Paternoga, Bertrand Beckert, Lars V Bock, Shinobu Chiba, Daniel N Wilson
Publisher Correction: RAPP-containing arrest peptides induce translational stalling by short circuiting the ribosomal peptidyltransferase activity. Nature communications 15 (1) (2024)
Martino Morici, Sara Gabrielli, Keigo Fujiwara, Helge Paternoga, Bertrand Beckert, Lars V Bock, Shinobu Chiba, Daniel N Wilson
RAPP-containing arrest peptides induce translational stalling by short circuiting the ribosomal peptidyltransferase activity. Nature communications 15 (1) (2024)
Martino Morici, Sara Gabrielli, Keigo Fujiwara, Helge Paternoga, Bertrand Beckert, Lars V Bock, Shinobu Chiba, Daniel N Wilson
RAPP-containing arrest peptides induce translational stalling by short circuiting the ribosomal peptidyltransferase activity. Nature communications 15 (1) (2024)
Keigo Fujiwara, Naoko Tsuji, Mayu Yoshida, Hiraku Takada, Shinobu Chiba
Patchy and widespread distribution of bacterial translation arrest peptides associated with the protein localization machinery. Nature communications 15 (1) (2024)
Keigo Fujiwara, Naoko Tsuji, Mayu Yoshida, Hiraku Takada, Shinobu Chiba
Patchy and widespread distribution of bacterial translation arrest peptides associated with the protein localization machinery. Nature communications 15 (1) (2024)
Martino Morici, Sara Gabrielli, Keigo Fujiwara, Helge Paternoga, Bertrand Beckert, Lars V Bock, Shinobu Chiba, Daniel N Wilson
RAPP-containing arrest peptides induce translational stalling by short circuiting the ribosomal peptidyltransferase activity. Nature communications 15 (1) (2024)
Martino Morici, Sara Gabrielli, Keigo Fujiwara, Helge Paternoga, Bertrand Beckert, Lars V Bock, Shinobu Chiba, Daniel N Wilson
Publisher Correction: RAPP-containing arrest peptides induce translational stalling by short circuiting the ribosomal peptidyltransferase activity. Nature communications 15 (1) (2024)
Felix Gersteuer, Martino Morici, Sara Gabrielli, Keigo Fujiwara, Haaris A Safdari, Helge Paternoga, Lars V Bock, Shinobu Chiba, Daniel N Wilson
The SecM arrest peptide traps a pre-peptide bond formation state of the ribosome. Nature communications 15 (1) (2024)
Hiraku Takada, Keigo Fujiwara, Gemma C Atkinson, Shinobu Chiba, Vasili Hauryliuk
Resolution of ribosomal stalling by EF-P and ABCF ATPases YfmR and YkpA/YbiT. Nucleic acids research (2024)
Hiraku Takada, Helge Paternoga, Keigo Fujiwara, Jose A Nakamoto, Esther N Park, Lyudmila Dimitrova-Paternoga, Bertrand Beckert, Merilin Saarma, Tanel Tenson, Allen R Buskirk, Gemma C Atkinson, Shinobu Chiba, Daniel N Wilson, Vasili Hauryliuk
A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis. Nucleic acids research 52 (14) (2024)
Hiraku Takada, Helge Paternoga, Keigo Fujiwara, Jose A Nakamoto, Esther N Park, Lyudmila Dimitrova-Paternoga, Bertrand Beckert, Merilin Saarma, Tanel Tenson, Allen R Buskirk, Gemma C Atkinson, Shinobu Chiba, Daniel N Wilson, Vasili Hauryliuk
A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis. Nucleic acids research (2024)
Nozomi Ugajin, Koshi Imami, Hiraku Takada, Yasushi Ishihama, Shinobu Chiba, Yuichiro Mishima
Znf598-mediated Rps10/eS10 ubiquitination contributes to the ribosome ubiquitination dynamics during zebrafish development. RNA (New York, N.Y.) (2023)
Nozomu Obana, Hiraku Takada, Caillan Crowe-McAuliffe, Mizuki Iwamoto, Artyom A Egorov, Kelvin J Y Wu, Shinobu Chiba, Victoriia Murina, Helge Paternoga, Ben I C Tresco, Nobuhiko Nomura, Andrew G Myers, Gemma C Atkinson, Daniel N Wilson, Vasili Hauryliuk
Genome-encoded ABCF factors implicated in intrinsic antibiotic resistance in Gram-positive bacteria: VmlR2, Ard1 and CplR. Nucleic acids research (2023)
Hiraku Takada, Zachary F Mandell, Helen Yakhnin, Anastasiya Glazyrina, Shinobu Chiba, Tatsuaki Kurata, Kelvin J Y Wu, Ben I C Tresco, Andrew G Myers, Gemma C Aktinson, Paul Babitzke, Vasili Hauryliuk
Expression of Bacillus subtilis ABCF antibiotic resistance factor VmlR is regulated by RNA polymerase pausing, transcription attenuation, translation attenuation and (p)ppGpp. Nucleic acids research 50 (11) (2022)
Naomi Shimokawa-Chiba, Claudia Müller, Keigo Fujiwara, Bertrand Beckert, Koreaki Ito, Daniel N Wilson, Shinobu Chiba
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis. Nature communications 10 (1) (2019)