Ana-Nicoleta Bondar

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 28

Top Topics

Molecular Dynamics Simulations

Electron Transfer

Top Venues

The journal of physical chemistry. B

Journal of chemical information and modeling

The Journal of membrane biology

This page only lists publications with an associated author ORCID identifier.

Publications

Leisheng Sun, Kalina Hristova, Ana-Nicoleta Bondar, William C Wimley
Structural Determinants of Peptide Nanopore Formation. ACS nano 18 (24) (2024)
Necla Birgül Iyison, Clauda Abboud, Dayana Abboud, Abdulrasheed O Abdulrahman, Ana-Nicoleta Bondar, Julie Dam, Zafiroula Georgoussi, Jesus Giraldo, Anemari Horvat, Christos Karoussiotis, Alba Paz-Castro, Miriam Scarpa, Hannes Schihada, Nicole Scholz, Bilge Güvenc Tuna, Nina Vardjan
ERNEST COST action overview on the (patho)physiology of GPCRs and orphan GPCRs in the nervous system. British journal of pharmacology (2024)
Leisheng Sun, Kalina Hristova, Ana-Nicoleta Bondar, William C Wimley
Structural Determinants of Peptide Nanopore Formation. ACS nano (2024)
Éva Bertalan, Masae Konno, María Del Carmen Marín, Reza Bagherzadeh, Takashi Nagata, Leonid S Brown, Keiichi Inoue, Ana-Nicoleta Bondar
Hydrogen-Bonding and Hydrophobic Interaction Networks as Structural Determinants of Microbial Rhodopsin Function. The journal of physical chemistry. B (2024)
Leisheng Sun, Kalina Hristova, Ana-Nicoleta Bondar, William C Wimley
Structural Determinants of Peptide Nanopore Formation. ACS nano 18 (24) (2024)
Leisheng Sun, Kalina Hristova, Ana-Nicoleta Bondar, William C Wimley
Structural Determinants of Peptide Nanopore Formation. ACS nano 18 (24) (2024)
Leisheng Sun, Kalina Hristova, Ana-Nicoleta Bondar, William C Wimley
Structural Determinants of Peptide Nanopore Formation. ACS nano 18 (24) (2024)
Éva Bertalan, Masae Konno, María Del Carmen Marín, Reza Bagherzadeh, Takashi Nagata, Leonid S Brown, Keiichi Inoue, Ana-Nicoleta Bondar
Hydrogen-Bonding and Hydrophobic Interaction Networks as Structural Determinants of Microbial Rhodopsin Function. The journal of physical chemistry. B 128 (30) (2024)
Maryam Saliminasab, Yoichi Yamazaki, Alyssa Palmateer, Andrew Harris, Luiz Schubert, Pit Langner, Joachim Heberle, Ana-Nicoleta Bondar, Leonid S Brown
A Proteorhodopsin-Related Photosensor Expands the Repertoire of Structural Motifs Employed by Sensory Rhodopsins. The journal of physical chemistry. B (2023)
Samo Lešnik, Urban Bren, Tatiana Domratcheva, Ana-Nicoleta Bondar
Fentanyl and the Fluorinated Fentanyl Derivative NFEPP Elicit Distinct Hydrogen-Bond Dynamics of the Opioid Receptor. Journal of chemical information and modeling (2023)
Ana-Nicoleta Bondar
Graphs of Hydrogen-Bond Networks to Dissect Protein Conformational Dynamics. The journal of physical chemistry. B 126 (22) (2022)
Malte Siemers, Ana-Nicoleta Bondar
Interactive Interface for Graph-Based Analyses of Dynamic H-Bond Networks: Application to Spike Protein S. Journal of chemical information and modeling (2021)
Thomas Giannos, Samo Lešnik, Urban Bren, Milan Hodošček, Tatiana Domratcheva, Ana-Nicoleta Bondar
CHARMM Force-Field Parameters for Morphine, Heroin, and Oliceridine, and Conformational Dynamics of Opioid Drugs. Journal of chemical information and modeling 61 (8) (2021)
Éva Bertalan, Elena Lesca, Gebhard F X Schertler, Ana-Nicoleta Bondar
C-Graphs Tool with Graphical User Interface to Dissect Conserved Hydrogen-Bond Networks: Applications to Visual Rhodopsins. Journal of chemical information and modeling 61 (11) (2021)
Lisa Gerland, Daniel Stöppler, Linus Hopf, Eavan J Donovan, Arndt Wallmann, Natalja Erdmann, Anne Diehl, Martin Bommer, Krzysztof Buzar, Mohamed Ibrahim, Peter Schmieder, Holger Dobbek, Athina Zouni, Ana-Nicoleta Bondar, Holger Dau, Hartmut Oschkinat
pH-Dependent Protonation of Surface Carboxylate Groups in PsbO Enables Local Buffering and Triggers Structural Changes. Chembiochem : a European journal of chemical biology 21 (11) (2020)
Oskar Klaja, James Allen Frank, Dirk H Trauner, Ana-Nicoleta Bondar
Potential energy function for a photo-switchable lipid molecule. Journal of computational chemistry 41 (27) (2020)
Ana-Nicoleta Bondar
Phosphatidylglyerol Lipid Binding at the Active Site of an Intramembrane Protease. The Journal of membrane biology 253 (6) (2020)
Andrew Harris, Michalis Lazaratos, Malte Siemers, Ethan Watt, Anh Hoang, Sahoko Tomida, Luiz Schubert, Mattia Saita, Joachim Heberle, Yuji Furutani, Hideki Kandori, Ana-Nicoleta Bondar, Leonid S Brown
Mechanism of Inward Proton Transport in an Antarctic Microbial Rhodopsin. The journal of physical chemistry. B 124 (24) (2020)
Samo Lešnik, Milan Hodošček, Urban Bren, Christoph Stein, Ana-Nicoleta Bondar
Potential Energy Function for Fentanyl-Based Opioid Pain Killers. Journal of chemical information and modeling 60 (7) (2020)
Ana-Nicoleta Bondar
Introduction: Biomembrane Structure, Dynamics, and Reactions. Chemical reviews 119 (9) (2020)
Malte Siemers, Michalis Lazaratos, Konstantina Karathanou, Federico Guerra, Leonid S Brown, Ana-Nicoleta Bondar
Bridge: A Graph-Based Algorithm to Analyze Dynamic H-Bond Networks in Membrane Proteins. Journal of chemical theory and computation 15 (12) (2019)
Ana-Nicoleta Bondar, Mary Joanne Lemieux
Reactions at Biomembrane Interfaces. Chemical reviews 119 (9) (2019)
Ana-Nicoleta Bondar
Mechanisms by Which Lipids Influence Conformational Dynamics of the GlpG Intramembrane Protease. The journal of physical chemistry. B 123 (19) (2019)
Lukas Kemmler, Mohamed Ibrahim, Holger Dobbek, Athina Zouni, Ana-Nicoleta Bondar
Dynamic water bridging and proton transfer at a surface carboxylate cluster of photosystem II. Physical chemistry chemical physics : PCCP 21 (45) (2019)
Konstantina Karathanou, Ana-Nicoleta Bondar
Using Graphs of Dynamic Hydrogen-Bond Networks To Dissect Conformational Coupling in a Protein Motor. Journal of chemical information and modeling 59 (5) (2019)
Ana-Nicoleta Bondar, Sandro Keller
Lipid Membranes and Reactions at Lipid Interfaces: Theory, Experiments, and Applications. The Journal of membrane biology 251 (3) (2018)
Federico Guerra, Malte Siemers, Christopher Mielack, Ana-Nicoleta Bondar
Dynamics of Long-Distance Hydrogen-Bond Networks in Photosystem II. The journal of physical chemistry. B 122 (17) (2018)
Konstantina Karathanou, Ana-Nicoleta Bondar
Dynamic Water Hydrogen-Bond Networks at the Interface of a Lipid Membrane Containing Palmitoyl-Oleoyl Phosphatidylglycerol. The Journal of membrane biology 251 (3) (2018)