Keiichi Inoue

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 56

Top Topics

Machine Learning

Diabetic Retinopathy

Molecular Dynamics

Top Venues

The journal of physical chemistry. B

Journal of the American Chemical Society

The journal of physical chemistry letters

This page only lists publications with an associated author ORCID identifier.

Publications

Taito Urui, Kouhei Hayashi, Misao Mizuno, Keiichi Inoue, Hideki Kandori, Yasuhisa Mizutani
Cis - Trans Reisomerization Preceding Reprotonation of the Retinal Chromophore Is Common to the Schizorhodopsin Family: A Simple and Rational Mechanism for Inward Proton Pumping. The journal of physical chemistry. B 128 (3) (2024)
Taito Urui, Tomomi Shionoya, Misao Mizuno, Keiichi Inoue, Hideki Kandori, Yasuhisa Mizutani
Chromophore-Protein Interactions Affecting the Polyene Twist and π-π* Energy Gap of the Retinal Chromophore in Schizorhodopsins. The journal of physical chemistry. B 128 (10) (2024)
Kazuhiro J Fujimoto, Yuta A Tsuzuki, Keiichi Inoue, Takeshi Yanai
Molecular Mechanisms behind Circular Dichroism Spectral Variations between Channelrhodopsin and Heliorhodopsin Dimers. The journal of physical chemistry letters (2024)
Taito Urui, Kouhei Hayashi, Misao Mizuno, Keiichi Inoue, Hideki Kandori, Yasuhisa Mizutani
Cis - Trans Reisomerization Preceding Reprotonation of the Retinal Chromophore Is Common to the Schizorhodopsin Family: A Simple and Rational Mechanism for Inward Proton Pumping. The journal of physical chemistry. B (2024)
Kazuhiro J Fujimoto, Yuta A Tsuzuki, Keiichi Inoue, Takeshi Yanai
Molecular Mechanisms behind Circular Dichroism Spectral Variations between Channelrhodopsin and Heliorhodopsin Dimers. The journal of physical chemistry letters 15 (21) (2024)
Kazuhiro J Fujimoto, Yuta A Tsuzuki, Keiichi Inoue, Takeshi Yanai
Molecular Mechanisms behind Circular Dichroism Spectral Variations between Channelrhodopsin and Heliorhodopsin Dimers. The journal of physical chemistry letters 15 (21) (2024)
Taito Urui, Tomomi Shionoya, Misao Mizuno, Keiichi Inoue, Hideki Kandori, Yasuhisa Mizutani
Chromophore-Protein Interactions Affecting the Polyene Twist and π-π* Energy Gap of the Retinal Chromophore in Schizorhodopsins. The journal of physical chemistry. B (2024)
Kazuhiro J Fujimoto, Yuta A Tsuzuki, Keiichi Inoue, Takeshi Yanai
Molecular Mechanisms behind Circular Dichroism Spectral Variations between Channelrhodopsin and Heliorhodopsin Dimers. The journal of physical chemistry letters 15 (21) (2024)
Taito Urui, Tomomi Shionoya, Misao Mizuno, Keiichi Inoue, Hideki Kandori, Yasuhisa Mizutani
Chromophore-Protein Interactions Affecting the Polyene Twist and π-π* Energy Gap of the Retinal Chromophore in Schizorhodopsins. The journal of physical chemistry. B 128 (10) (2024)
Kazuhiro J Fujimoto, Yuta A Tsuzuki, Keiichi Inoue, Takeshi Yanai
Molecular Mechanisms behind Circular Dichroism Spectral Variations between Channelrhodopsin and Heliorhodopsin Dimers. The journal of physical chemistry letters 15 (21) (2024)
Éva Bertalan, Masae Konno, María Del Carmen Marín, Reza Bagherzadeh, Takashi Nagata, Leonid S Brown, Keiichi Inoue, Ana-Nicoleta Bondar
Hydrogen-Bonding and Hydrophobic Interaction Networks as Structural Determinants of Microbial Rhodopsin Function. The journal of physical chemistry. B (2024)
Taito Urui, Kouhei Hayashi, Misao Mizuno, Keiichi Inoue, Hideki Kandori, Yasuhisa Mizutani
Cis - Trans Reisomerization Preceding Reprotonation of the Retinal Chromophore Is Common to the Schizorhodopsin Family: A Simple and Rational Mechanism for Inward Proton Pumping. The journal of physical chemistry. B 128 (3) (2024)
Éva Bertalan, Masae Konno, María Del Carmen Marín, Reza Bagherzadeh, Takashi Nagata, Leonid S Brown, Keiichi Inoue, Ana-Nicoleta Bondar
Hydrogen-Bonding and Hydrophobic Interaction Networks as Structural Determinants of Microbial Rhodopsin Function. The journal of physical chemistry. B 128 (30) (2024)
Ryota Matsuo, Mitsumasa Koyanagi, Tomohiro Sugihara, Taishi Shirata, Takashi Nagata, Keiichi Inoue, Yuko Matsuo, Akihisa Terakita
Functional characterization of four opsins and two G alpha subtypes co-expressed in the molluscan rhabdomeric photoreceptor. BMC biology 21 (1) (2023)
Ariel Chazan, Ishita Das, Takayoshi Fujiwara, Shunya Murakoshi, Andrey Rozenberg, Ana Molina-Márquez, Fumiya K Sano, Tatsuki Tanaka, Patricia Gómez-Villegas, Shirley Larom, Alina Pushkarev, Partha Malakar, Masumi Hasegawa, Yuya Tsukamoto, Tomohiro Ishizuka, Masae Konno, Takashi Nagata, Yosuke Mizuno, Kota Katayama, Rei Abe-Yoshizumi, Sanford Ruhman, Keiichi Inoue, Hideki Kandori, Rosa León, Wataru Shihoya, Susumu Yoshizawa, Mordechai Sheves, Osamu Nureki, Oded Béjà
Phototrophy by antenna-containing rhodopsin pumps in aquatic environments. Nature 615 (7952) (2023)
Ariel Chazan, Ishita Das, Takayoshi Fujiwara, Shunya Murakoshi, Andrey Rozenberg, Ana Molina-Márquez, Fumiya K Sano, Tatsuki Tanaka, Patricia Gómez-Villegas, Shirley Larom, Alina Pushkarev, Partha Malakar, Masumi Hasegawa, Yuya Tsukamoto, Tomohiro Ishizuka, Masae Konno, Takashi Nagata, Yosuke Mizuno, Kota Katayama, Rei Abe-Yoshizumi, Sanford Ruhman, Keiichi Inoue, Hideki Kandori, Rosa León, Wataru Shihoya, Susumu Yoshizawa, Mordechai Sheves, Osamu Nureki, Oded Béjà
Phototrophy by antenna-containing rhodopsin pumps in aquatic environments. Nature 615 (7952) (2023)
Keisei Shibata, Kazumasa Oda, Tomohiro Nishizawa, Yuji Hazama, Ryohei Ono, Shunki Takaramoto, Reza Bagherzadeh, Hiromu Yawo, Osamu Nureki, Keiichi Inoue, Hidefumi Akiyama
Twisting and Protonation of Retinal Chromophore Regulate Channel Gating of Channelrhodopsin C1C2. Journal of the American Chemical Society 145 (19) (2023)
Keisei Shibata, Kazumasa Oda, Tomohiro Nishizawa, Yuji Hazama, Ryohei Ono, Shunki Takaramoto, Reza Bagherzadeh, Hiromu Yawo, Osamu Nureki, Keiichi Inoue, Hidefumi Akiyama
Twisting and Protonation of Retinal Chromophore Regulate Channel Gating of Channelrhodopsin C1C2. Journal of the American Chemical Society 145 (19) (2023)
Ryota Matsuo, Mitsumasa Koyanagi, Tomohiro Sugihara, Taishi Shirata, Takashi Nagata, Keiichi Inoue, Yuko Matsuo, Akihisa Terakita
Functional characterization of four opsins and two G alpha subtypes co-expressed in the molluscan rhabdomeric photoreceptor. BMC biology 21 (1) (2023)
Yusuke Nakasone, Yuma Kawasaki, Masae Konno, Keiichi Inoue, Masahide Terazima
Time-resolved detection of light-induced conformational changes of heliorhodopsin. Physical chemistry chemical physics : PCCP 25 (18) (2023)
Naoya Morimoto, Takashi Nagata, Keiichi Inoue
Reversible Photoreaction of a Retinal Photoisomerase, Retinal G-Protein-Coupled Receptor RGR. Biochemistry (2023)
Ryota Matsuo, Mitsumasa Koyanagi, Tomohiro Sugihara, Taishi Shirata, Takashi Nagata, Keiichi Inoue, Yuko Matsuo, Akihisa Terakita
Functional characterization of four opsins and two G alpha subtypes co-expressed in the molluscan rhabdomeric photoreceptor. BMC biology 21 (1) (2023)
Chun-Fu Chang, Masae Konno, Keiichi Inoue, Tahei Tahara
Effects of the Unique Chromophore-Protein Interactions on the Primary Photoreaction of Schizorhodopsin. The journal of physical chemistry letters (2023)
Yusuke Nakasone, Yuma Kawasaki, Masae Konno, Keiichi Inoue, Masahide Terazima
Time-resolved detection of light-induced conformational changes of heliorhodopsin. Physical chemistry chemical physics : PCCP 25 (18) (2023)
Keisei Shibata, Kazumasa Oda, Tomohiro Nishizawa, Yuji Hazama, Ryohei Ono, Shunki Takaramoto, Reza Bagherzadeh, Hiromu Yawo, Osamu Nureki, Keiichi Inoue, Hidefumi Akiyama
Twisting and Protonation of Retinal Chromophore Regulate Channel Gating of Channelrhodopsin C1C2. Journal of the American Chemical Society (2023)
Keiichi Inoue
Photochemistry of the Retinal Chromophore in Microbial Rhodopsins. The journal of physical chemistry. B (2023)
María Del Carmen Marín, Masae Konno, Hiromu Yawo, Keiichi Inoue
Converting a Natural-Light-Driven Outward Proton Pump Rhodopsin into an Artificial Inward Proton Pump. Journal of the American Chemical Society (2023)
Shunpei Hanai, Takashi Nagata, Kota Katayama, Shino Inukai, Mitsumasa Koyanagi, Keiichi Inoue, Akihisa Terakita, Hideki Kandori
Difference FTIR Spectroscopy of Jumping Spider Rhodopsin-1 at 77 K. Biochemistry (2023)
María Del Carmen Marín, Masae Konno, Hiromu Yawo, Keiichi Inoue
Converting a Natural-Light-Driven Outward Proton Pump Rhodopsin into an Artificial Inward Proton Pump. Journal of the American Chemical Society (2023)
Keisei Shibata, Kazumasa Oda, Tomohiro Nishizawa, Yuji Hazama, Ryohei Ono, Shunki Takaramoto, Reza Bagherzadeh, Hiromu Yawo, Osamu Nureki, Keiichi Inoue, Hidefumi Akiyama
Twisting and Protonation of Retinal Chromophore Regulate Channel Gating of Channelrhodopsin C1C2. Journal of the American Chemical Society 145 (19) (2023)
Ariel Chazan, Ishita Das, Takayoshi Fujiwara, Shunya Murakoshi, Andrey Rozenberg, Ana Molina-Márquez, Fumiya K Sano, Tatsuki Tanaka, Patricia Gómez-Villegas, Shirley Larom, Alina Pushkarev, Partha Malakar, Masumi Hasegawa, Yuya Tsukamoto, Tomohiro Ishizuka, Masae Konno, Takashi Nagata, Yosuke Mizuno, Kota Katayama, Rei Abe-Yoshizumi, Sanford Ruhman, Keiichi Inoue, Hideki Kandori, Rosa León, Wataru Shihoya, Susumu Yoshizawa, Mordechai Sheves, Osamu Nureki, Oded Béjà
Phototrophy by antenna-containing rhodopsin pumps in aquatic environments. Nature 615 (7952) (2023)
Manish Singh, Shota Ito, Shoko Hososhima, Rei Abe-Yoshizumi, Satoshi P Tsunoda, Keiichi Inoue, Hideki Kandori
Light-Driven Chloride and Sulfate Pump with Two Different Transport Modes. The journal of physical chemistry. B (2023)
Ariel Chazan, Ishita Das, Takayoshi Fujiwara, Shunya Murakoshi, Andrey Rozenberg, Ana Molina-Márquez, Fumiya K Sano, Tatsuki Tanaka, Patricia Gómez-Villegas, Shirley Larom, Alina Pushkarev, Partha Malakar, Masumi Hasegawa, Yuya Tsukamoto, Tomohiro Ishizuka, Masae Konno, Takashi Nagata, Yosuke Mizuno, Kota Katayama, Rei Abe-Yoshizumi, Sanford Ruhman, Keiichi Inoue, Hideki Kandori, Rosa León, Wataru Shihoya, Susumu Yoshizawa, Mordechai Sheves, Osamu Nureki, Oded Béjà
Phototrophy by antenna-containing rhodopsin pumps in aquatic environments. Nature (2023)
María Del Carmen Marín, Masae Konno, Hiromu Yawo, Keiichi Inoue
Converting a Natural-Light-Driven Outward Proton Pump Rhodopsin into an Artificial Inward Proton Pump. Journal of the American Chemical Society (2023)
Ryota Matsuo, Mitsumasa Koyanagi, Tomohiro Sugihara, Taishi Shirata, Takashi Nagata, Keiichi Inoue, Yuko Matsuo, Akihisa Terakita
Functional characterization of four opsins and two G alpha subtypes co-expressed in the molluscan rhabdomeric photoreceptor. BMC biology 21 (1) (2023)
María Del Carmen Marín, Masae Konno, Hiromu Yawo, Keiichi Inoue
Converting a Natural-Light-Driven Outward Proton Pump Rhodopsin into an Artificial Inward Proton Pump. Journal of the American Chemical Society (2023)
Oded Béjà, Keiichi Inoue
Iron-limitation light switch. Nature microbiology (2023)
Andrey Rozenberg, Igor Kaczmarczyk, Donna Matzov, Johannes Vierock, Takashi Nagata, Masahiro Sugiura, Kota Katayama, Yuma Kawasaki, Masae Konno, Yujiro Nagasaka, Mako Aoyama, Ishita Das, Efrat Pahima, Jonathan Richard Church, Suliman Adam, Veniamin A Borin, Ariel Chazan, Sandra Augustin, Jonas Wietek, Julien Dine, Yoav Peleg, Akira Kawanabe, Yuichiro Fujiwara, Ofer Yizhar, Mordechai Sheves, Igor Schapiro, Yuji Furutani, Hideki Kandori, Keiichi Inoue, Peter Hegemann, Oded Béjà, Moran Shalev-Benami
Rhodopsin-bestrophin fusion proteins from unicellular algae form gigantic pentameric ion channels. Nature structural & molecular biology 29 (6) (2022)
Alexander L Jaffe, Masae Konno, Yuma Kawasaki, Chihiro Kataoka, Oded Béjà, Hideki Kandori, Keiichi Inoue, Jillian F Banfield
Saccharibacteria harness light energy using type-1 rhodopsins that may rely on retinal sourced from microbial hosts. The ISME journal 16 (8) (2022)
Shoko Hososhima, Ritsu Mizutori, Rei Abe-Yoshizumi, Andrey Rozenberg, Shunta Shigemura, Alina Pushkarev, Masae Konno, Kota Katayama, Keiichi Inoue, Satoshi P Tsunoda, Oded Béjà, Hideki Kandori
Proton-transporting heliorhodopsins from marine giant viruses. eLife 11 (2022)
Ariel Chazan, Andrey Rozenberg, Kentaro Mannen, Takashi Nagata, Ran Tahan, Shir Yaish, Shirley Larom, Keiichi Inoue, Oded Béjà, Alina Pushkarev
Diverse heliorhodopsins detected via functional metagenomics in freshwater Actinobacteria, Chloroflexi and Archaea. Environmental microbiology 24 (1) (2022)
Takashi Nagata, Keiichi Inoue
Rhodopsins at a glance. Journal of cell science 134 (22) (2021)
Akimitsu Higuchi, Wataru Shihoya, Masae Konno, Tatsuya Ikuta, Hideki Kandori, Keiichi Inoue, Osamu Nureki
Crystal structure of schizorhodopsin reveals mechanism of inward proton pumping. Proceedings of the National Academy of Sciences of the United States of America 118 (14) (2021)
Chihiro Kataoka, Teppei Sugimoto, Shunta Shigemura, Kota Katayama, Satoshi P Tsunoda, Keiichi Inoue, Oded Béjà, Hideki Kandori
TAT Rhodopsin Is an Ultraviolet-Dependent Environmental pH Sensor. Biochemistry 60 (12) (2021)
Yuta Nakajima, Laura Pedraza-González, Leonardo Barneschi, Keiichi Inoue, Massimo Olivucci, Hideki Kandori
Pro219 is an electrostatic color determinant in the light-driven sodium pump KR2. Communications biology 4 (1) (2021)
Keiichi Inoue, Masayuki Karasuyama, Ryoko Nakamura, Masae Konno, Daichi Yamada, Kentaro Mannen, Takashi Nagata, Yu Inatsu, Hiromu Yawo, Kei Yura, Oded Béjà, Hideki Kandori, Ichiro Takeuchi
Exploration of natural red-shifted rhodopsins using a machine learning-based Bayesian experimental design. Communications biology 4 (1) (2021)
Kazuhiro J Fujimoto, Keiichi Inoue
Excitonic coupling effect on the circular dichroism spectrum of sodium-pumping rhodopsin KR2. The Journal of chemical physics 153 (4) (2021)
Kazumasa Oda, Takashi Nomura, Takanori Nakane, Keitaro Yamashita, Keiichi Inoue, Shota Ito, Johannes Vierock, Kunio Hirata, Andrés D Maturana, Kota Katayama, Tatsuya Ikuta, Itsuki Ishigami, Tamaki Izume, Rie Umeda, Ryuun Eguma, Satomi Oishi, Go Kasuya, Takafumi Kato, Tsukasa Kusakizako, Wataru Shihoya, Hiroto Shimada, Tomoyuki Takatsuji, Mizuki Takemoto, Reiya Taniguchi, Atsuhiro Tomita, Ryoki Nakamura, Masahiro Fukuda, Hirotake Miyauchi, Yongchan Lee, Eriko Nango, Rie Tanaka, Tomoyuki Tanaka, Michihiro Sugahara, Tetsunari Kimura, Tatsuro Shimamura, Takaaki Fujiwara, Yasuaki Yamanaka, Shigeki Owada, Yasumasa Joti, Kensuke Tono, Ryuichiro Ishitani, Shigehiko Hayashi, Hideki Kandori, Peter Hegemann, So Iwata, Minoru Kubo, Tomohiro Nishizawa, Osamu Nureki
Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin. eLife 10 (2021)
Keiichi Inoue, Masayuki Karasuyama, Ryoko Nakamura, Masae Konno, Daichi Yamada, Kentaro Mannen, Takashi Nagata, Yu Inatsu, Hiromu Yawo, Kei Yura, Oded Béjà, Hideki Kandori, Ichiro Takeuchi
Author Correction: Exploration of natural red-shifted rhodopsins using a machine learning-based Bayesian experimental design. Communications biology 4 (1) (2021)
Keiichi Inoue, Satoshi P Tsunoda, Manish Singh, Sahoko Tomida, Shoko Hososhima, Masae Konno, Ryoko Nakamura, Hiroki Watanabe, Paul-Adrian Bulzu, Horia L Banciu, Adrian-Ştefan Andrei, Takayuki Uchihashi, Rohit Ghai, Oded Béjà, Hideki Kandori
Schizorhodopsins: A family of rhodopsins from Asgard archaea that function as light-driven inward H+ pumps. Science advances 6 (15) (2020)
Akihiro Otomo, Misao Mizuno, Keiichi Inoue, Hideki Kandori, Yasuhisa Mizutani
Allosteric Communication with the Retinal Chromophore upon Ion Binding in a Light-Driven Sodium Ion-Pumping Rhodopsin. Biochemistry 59 (4) (2020)
Shinya Tahara, Manish Singh, Hikaru Kuramochi, Wataru Shihoya, Keiichi Inoue, Osamu Nureki, Oded Béjà, Yasuhisa Mizutani, Hideki Kandori, Tahei Tahara
Ultrafast Dynamics of Heliorhodopsins. The journal of physical chemistry. B 123 (11) (2019)
Takefumi Morizumi, Wei-Lin Ou, Ned Van Eps, Keiichi Inoue, Hideki Kandori, Leonid S Brown, Oliver P Ernst
X-ray Crystallographic Structure and Oligomerization of Gloeobacter Rhodopsin. Scientific reports 9 (1) (2019)
Keiichi Inoue, Maria Del Carmen Muñoz-Marín, Sahoko Tomida, Ryoko Nakamura, Yuta Nakajima, Massimo Olivucci, Hideki Kandori
Red-shifting mutation of light-driven sodium-pump rhodopsin. Nature communications 10 (1) (2019)
Paul-Adrian Bulzu, Adrian-Ştefan Andrei, Michaela M Salcher, Maliheh Mehrshad, Keiichi Inoue, Hideki Kandori, Oded Beja, Rohit Ghai, Horia L Banciu
Casting light on Asgardarchaeota metabolism in a sunlit microoxic niche. Nature microbiology 4 (7) (2019)
Chihiro Kataoka, Keiichi Inoue, Kota Katayama, Oded Béjà, Hideki Kandori
Unique Photochemistry Observed in a New Microbial Rhodopsin. The journal of physical chemistry letters 10 (17) (2019)