Andrew Ben Stergachis (Andrew Stergachis, Andrew B Stergachis)

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 40

Top Topics

Atomic Force Microscopy

Top Venues

bioRxiv : the preprint server for biology

Circulation. Genomic and precision medicine

Nature structural & molecular biology

This page only lists publications with an associated author ORCID identifier.

Publications

Yong-Han Hank Cheng, Stephanie C Bohaczuk, Andrew Ben Stergachis
Functional categorization of gene regulatory variants that cause Mendelian conditions. Human genetics 143 (4) (2024)
Yong-Han Hank Cheng, Stephanie C Bohaczuk, Andrew Ben Stergachis
Functional categorization of gene regulatory variants that cause Mendelian conditions. Human genetics 143 (4) (2024)
Kerry L Bubb, Morgan O Hamm, Joseph K Min, Bryan Ramirez-Corona, Nicholas A Mueth, Jane Ranchalis, Mitchell R Vollger, Cole Trapnell, Josh T Cuperus, Christine Queitsch, Andrew Ben Stergachis
The regulatory potential of transposable elements in maize. bioRxiv : the preprint server for biology (2024)
R Stefan Isaac, Thomas W Tullius, Katja G Hansen, Danilo Dubocanin, Mary Couvillion, Andrew Ben Stergachis, L Stirling Churchman
Single-nucleoid architecture reveals heterogeneous packaging of mitochondrial DNA. Nature structural & molecular biology (2024)
Gabrielle A Hartley, Mariam Okhovat, Savannah J Hoyt, Emily Fuller, Nicole Pauloski, Nicolas Alexandre, Ivan A Alexandrov, Ryan Drennan, Danilo Dubocanin, David M Gilbert, Yizi Mao, Christine McCann, Shane Neph, Fedor D Ryabov, Takayo Sasaki, Jessica M Storer, Derek Svendsen, William Troy, Jackson Wells, Leighton J Core, Andrew Ben Stergachis, Lucia Carbone, Rachel J O'Neill
Centromeric transposable elements and epigenetic status drive karyotypic variation in the eastern hoolock gibbon. bioRxiv : the preprint server for biology (2024)
R Stefan Isaac, Thomas W Tullius, Katja G Hansen, Danilo Dubocanin, Mary Couvillion, Andrew Ben Stergachis, L Stirling Churchman
Single-nucleoid architecture reveals heterogeneous packaging of mitochondrial DNA. Nature structural & molecular biology (2024)
Yong-Han Hank Cheng, Stephanie C Bohaczuk, Andrew Ben Stergachis
Functional categorization of gene regulatory variants that cause Mendelian conditions. Human genetics 143 (4) (2024)
R Stefan Isaac, Thomas W Tullius, Katja G Hansen, Danilo Dubocanin, Mary Couvillion, Andrew Ben Stergachis, L Stirling Churchman
Single-nucleoid architecture reveals heterogeneous packaging of mitochondrial DNA. Nature structural & molecular biology 31 (3) (2024)
Stephanie C Bohaczuk, Zachary J Amador, Chang Li, Benjamin J Mallory, Elliott G Swanson, Jane Ranchalis, Mitchell R Vollger, Katherine M Munson, Tom Walsh, Morgan O Hamm, Yizi Mao, André Lieber, Andrew Ben Stergachis
Resolving the chromatin impact of mosaic variants with targeted Fiber-seq. bioRxiv : the preprint server for biology (2024)
R Stefan Isaac, Thomas W Tullius, Katja G Hansen, Danilo Dubocanin, Mary Couvillion, Andrew Ben Stergachis, L Stirling Churchman
Single-nucleoid architecture reveals heterogeneous packaging of mitochondrial DNA. Nature structural & molecular biology 31 (3) (2024)
Joanne G Ma, Matthew J O'Neill, Ebony Richardson, Kate L Thomson, Jodie Ingles, Ayesha Muhammad, Joseph F Solus, Giovanni E Davogustto, Katherine C Anderson, M Benjamin Shoemaker, Andrew Ben Stergachis, Brendan J Floyd, Kyla E Dunn, Victoria N Parikh, Henry ChubbW, Mark J Perrin, Dan M Roden, Jamie I Vandenberg, Chai-Ann Ng, Andrew M Glazer
Multisite Validation of a Functional Assay to Adjudicate SCN5A Brugada Syndrome-Associated Variants. Circulation. Genomic and precision medicine 17 (4) (2024)
Joanne G Ma, Matthew J O'Neill, Ebony Richardson, Kate L Thomson, Jodie Ingles, Ayesha Muhammad, Joseph F Solus, Giovanni E Davogustto, Katherine C Anderson, M Benjamin Shoemaker, Andrew Ben Stergachis, Brendan J Floyd, Kyla E Dunn, Victoria N Parikh, Henry ChubbW, Mark J Perrin, Dan M Roden, Jamie I Vandenberg, Chai-Ann Ng, Andrew M Glazer
Multisite Validation of a Functional Assay to Adjudicate SCN5A Brugada Syndrome-Associated Variants. Circulation. Genomic and precision medicine 17 (4) (2024)
Kerry L Bubb, Morgan O Hamm, Joseph K Min, Bryan Ramirez-Corona, Nicholas A Mueth, Jane Ranchalis, Mitchell R Vollger, Cole Trapnell, Josh T Cuperus, Christine Queitsch, Andrew Ben Stergachis
The regulatory potential of transposable elements in maize. bioRxiv : the preprint server for biology (2024)
R Stefan Isaac, Thomas W Tullius, Katja G Hansen, Danilo Dubocanin, Mary Couvillion, Andrew Ben Stergachis, L Stirling Churchman
Single-nucleoid architecture reveals heterogeneous packaging of mitochondrial DNA. Nature structural & molecular biology 31 (3) (2024)
Anupama Jha, Stephanie C Bohaczuk, Yizi Mao, Jane Ranchalis, Benjamin J Mallory, Alan T Min, Morgan O Hamm, Elliott Swanson, Danilo Dubocanin, Connor Finkbeiner, Tony Li, Dale Whittington, William Stafford Noble, Andrew Ben Stergachis, Mitchell R Vollger
DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools. Genome research (2024)
Joanne G Ma, Matthew J O'Neill, Ebony Richardson, Kate L Thomson, Jodie Ingles, Ayesha Muhammad, Joseph F Solus, Giovanni E Davogustto, Katherine C Anderson, M Benjamin Shoemaker, Andrew Ben Stergachis, Brendan J Floyd, Kyla E Dunn, Victoria N Parikh, Henry ChubbW, Mark J Perrin, Dan M Roden, Jamie I Vandenberg, Chai-Ann Ng, Andrew M Glazer
Multisite Validation of a Functional Assay to Adjudicate SCN5A Brugada Syndrome-Associated Variants. Circulation. Genomic and precision medicine (2024)
Yong-Han Hank Cheng, Stephanie C Bohaczuk, Andrew Ben Stergachis
Functional categorization of gene regulatory variants that cause Mendelian conditions. Human genetics 143 (4) (2024)
Anupama Jha, Stephanie C Bohaczuk, Yizi Mao, Jane Ranchalis, Benjamin J Mallory, Alan T Min, Morgan O Hamm, Elliott Swanson, Danilo Dubocanin, Connor Finkbeiner, Tony Li, Dale Whittington, William Stafford Noble, Andrew Ben Stergachis, Mitchell R Vollger
DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools. Genome research (2024)
Kerry L Bubb, Morgan O Hamm, Joseph K Min, Bryan Ramirez-Corona, Nicholas A Mueth, Jane Ranchalis, Mitchell R Vollger, Cole Trapnell, Josh T Cuperus, Christine Queitsch, Andrew Ben Stergachis
The regulatory potential of transposable elements in maize. bioRxiv : the preprint server for biology (2024)
Yong-Han Hank Cheng, Stephanie C Bohaczuk, Andrew Ben Stergachis
Functional categorization of gene regulatory variants that cause Mendelian conditions. Human genetics (2024)
Joanne G Ma, Matthew J O'Neill, Ebony Richardson, Kate L Thomson, Jodie Ingles, Ayesha Muhammad, Joseph F Solus, Giovanni E Davogustto, Katherine C Anderson, M Benjamin Shoemaker, Andrew Ben Stergachis, Brendan J Floyd, Kyla E Dunn, Victoria N Parikh, Henry ChubbW, Mark J Perrin, Dan M Roden, Jamie I Vandenberg, Chai-Ann Ng, Andrew M Glazer
Multisite Validation of a Functional Assay to Adjudicate SCN5A Brugada Syndrome-Associated Variants. Circulation. Genomic and precision medicine 17 (4) (2024)
Joanne G Ma, Matthew J O'Neill, Ebony Richardson, Kate L Thomson, Jodie Ingles, Ayesha Muhammad, Joseph F Solus, Giovanni E Davogustto, Katherine C Anderson, M Benjamin Shoemaker, Andrew Ben Stergachis, Brendan J Floyd, Kyla E Dunn, Victoria N Parikh, Henry ChubbW, Mark J Perrin, Dan M Roden, Jamie I Vandenberg, Chai-Ann Ng, Andrew M Glazer
Multisite Validation of a Functional Assay to Adjudicate SCN5A Brugada Syndrome-Associated Variants. Circulation. Genomic and precision medicine (2024)
Stephanie C Bohaczuk, Zachary J Amador, Chang Li, Benjamin J Mallory, Elliott G Swanson, Jane Ranchalis, Mitchell R Vollger, Katherine M Munson, Tom Walsh, Morgan O Hamm, Yizi Mao, André Lieber, Andrew Ben Stergachis
Resolving the chromatin impact of mosaic variants with targeted Fiber-seq. bioRxiv : the preprint server for biology (2024)
Thomas W Tullius, R Stefan Isaac, Jane Ranchalis, Danilo Dubocanin, L Stirling Churchman, Andrew Ben Stergachis
RNA polymerases reshape chromatin and coordinate transcription on individual fibers. bioRxiv : the preprint server for biology (2023)
Mitchell R Vollger, Jonas Korlach, Kiara C Eldred, Elliott G Swanson, Jason G Underwood, Yong-Han Hank Cheng, Jane Ranchalis, Yizi Mao, Elizabeth E Blue, Ulrike Schwarze, Katherine M Munson, Christopher T Saunders, Aaron M Wenger, Aimee Allworth, Sirisak Chanprasert, Brittney L Duerden, Ian Glass, Martha Horike-Pyne, Michelle Kim, Kathleen A Leppig, Ian J McLaughlin, Jessica Ogawa, Elisabeth A Rosenthal, Sam Sheppeard, Stephanie M Sherman, Samuel Strohbehn, Amy L Yuen, null null, null null, Thomas A Reh, Peter H Byers, Michael J Bamshad, Fuki M Hisama, Gail P Jarvik, Yasemin Sancak, Katrina M Dipple, Andrew Ben Stergachis
Synchronized long-read genome, methylome, epigenome, and transcriptome for resolving a Mendelian condition. bioRxiv : the preprint server for biology (2023)
Brian M Debo, Benjamin J Mallory, Andrew Ben Stergachis
Evaluation of N6-methyldeoxyadenosine antibody-based genomic profiling in eukaryotes. Genome research (2023)
Jonai Pujol-Giménez, Ghayda Mirzaa, Elizabeth E Blue, Giuseppe Albano, Danny E Miller, Aimee Allworth, James T Bennett, Peter H Byers, Sirisak Chanprasert, Jingheng Chen, Daniel Doherty, Andrew B Folta, Madelyn A Gillentine, Ian Glass, Anne Hing, Martha Horike-Pyne, Kathleen A Leppig, Azma Parhin, Jane Ranchalis, Wendy H Raskind, Elisabeth A Rosenthal, Ulrike Schwarze, Sam Sheppeard, Samuel Strohbehn, Virginia P Sybert, Andrew Timms, Mark Wener, null null, Michael J Bamshad, Fuki M Hisama, Gail P Jarvik, Katrina M Dipple, Matthias A Hediger, Andrew Ben Stergachis
Dominant-negative variant in SLC1A4 causes an autosomal dominant epilepsy syndrome. Annals of clinical and translational neurology (2023)
Anupama Jha, Stephanie C Bohaczuk, Yizi Mao, Jane Ranchalis, Benjamin J Mallory, Alan T Min, Morgan O Hamm, Elliott G Swanson, Connor Finkbeiner, Tony Li, Dale Whittington, William Stafford Noble, Andrew Ben Stergachis, Mitchell R Vollger
Fibertools: fast and accurate DNA-m6A calling using single-molecule long-read sequencing. bioRxiv : the preprint server for biology (2023)
Thomas W Tullius, R Stefan Isaac, Jane Ranchalis, Danilo Dubocanin, L Stirling Churchman, Andrew Ben Stergachis
RNA polymerases reshape chromatin and coordinate transcription on individual fibers. bioRxiv : the preprint server for biology (2023)
Thomas W Tullius, R Stefan Isaac, Jane Ranchalis, Danilo Dubocanin, L Stirling Churchman, Andrew Ben Stergachis
RNA polymerases reshape chromatin and coordinate transcription on individual fibers. bioRxiv : the preprint server for biology (2023)
Thomas W Tullius, R Stefan Isaac, Jane Ranchalis, Danilo Dubocanin, L Stirling Churchman, Andrew Ben Stergachis
RNA polymerases reshape chromatin and coordinate transcription on individual fibers. bioRxiv : the preprint server for biology (2023)
Thomas W Tullius, R Stefan Isaac, Jane Ranchalis, Danilo Dubocanin, L Stirling Churchman, Andrew Ben Stergachis
RNA polymerases reshape chromatin and coordinate transcription on individual fibers. bioRxiv : the preprint server for biology (2023)
Andrew Ben Stergachis, Elizabeth E Blue, Madelyn A Gillentine, Lee-Kai Wang, Ulrike Schwarze, Adriana Sedeño Cortés, Jane Ranchalis, Aimee Allworth, Austin E Bland, Sirisak Chanprasert, Jingheng Chen, Daniel Doherty, Andrew B Folta, Ian Glass, Martha Horike-Pyne, Alden Y Huang, Alyna T Khan, Kathleen A Leppig, Danny E Miller, Ghayda Mirzaa, Azma Parhin, Wendy H Raskind, Elisabeth A Rosenthal, Sam Sheppeard, Samuel Strohbehn, Virginia P Sybert, Thao T Tran, Mark H Wener, null null, Peter H H Byers, Stanley F Nelson, Michael J Bamshad, Katrina M Dipple, David L Veenstra, Suzanne Hoppins, Fuki M Hisama
Full-length Isoform Sequencing for Resolving the Molecular Basis of Charcot-Marie-Tooth 2A. Neurology. Genetics 9 (5) (2023)
Andrew Ben Stergachis, Elizabeth E Blue, Madelyn A Gillentine, Lee-Kai Wang, Ulrike Schwarze, Adriana Sedeño Cortés, Jane Ranchalis, Aimee Allworth, Austin E Bland, Sirisak Chanprasert, Jingheng Chen, Daniel Doherty, Andrew B Folta, Ian Glass, Martha Horike-Pyne, Alden Y Huang, Alyna T Khan, Kathleen A Leppig, Danny E Miller, Ghayda Mirzaa, Azma Parhin, Wendy Raskind, Elisabeth A Rosenthal, Sam Sheppeard, Samuel Strohbehn, Virginia P Sybert, Thao T Tran, Mark Wener, null null, Peter H Byers, Stanley F Nelson, Michael J Bamshad, Katrina M Dipple, Gail P Jarvik, Suzanne Hoppins, Fuki M Hisama
Full-length isoform sequencing for resolving the molecular basis of Charcot-Marie-Tooth 2A. bioRxiv : the preprint server for biology (2023)
Anupama Jha, Stephanie C Bohaczuk, Yizi Mao, Jane Ranchalis, Benjamin J Mallory, Alan T Min, Morgan O Hamm, Elliott G Swanson, Connor Finkbeiner, Tony Li, Dale Whittington, William Stafford Noble, Andrew Ben Stergachis, Mitchell R Vollger
Fibertools: fast and accurate DNA-m6A calling using single-molecule long-read sequencing. bioRxiv : the preprint server for biology (2023)
Andrew Ben Stergachis, Elizabeth E Blue, Madelyn A Gillentine, Lee-Kai Wang, Ulrike Schwarze, Adriana Sedeño Cortés, Jane Ranchalis, Aimee Allworth, Austin E Bland, Sirisak Chanprasert, Jingheng Chen, Daniel Doherty, Andrew B Folta, Ian Glass, Martha Horike-Pyne, Alden Y Huang, Alyna T Khan, Kathleen A Leppig, Danny E Miller, Ghayda Mirzaa, Azma Parhin, Wendy Raskind, Elisabeth A Rosenthal, Sam Sheppeard, Samuel Strohbehn, Virginia P Sybert, Thao T Tran, Mark Wener, null null, Peter H Byers, Stanley F Nelson, Michael J Bamshad, Katrina M Dipple, Gail P Jarvik, Suzanne Hoppins, Fuki M Hisama
Full-length isoform sequencing for resolving the molecular basis of Charcot-Marie-Tooth 2A. bioRxiv : the preprint server for biology (2023)
Brian M Debo, Benjamin J Mallory, Andrew Ben Stergachis
Evaluation of N 6 -methyldeoxyadenosine antibody-based genomic profiling in eukaryotes. Genome research (2023)
Andrew Ben Stergachis, Kris M Mogensen, Charbel C Khoury, Alexander P Lin, Roy Wa Peake, Joshua J Baker, Ebrahim Barkoudah, Inderneel Sahai, David A Sweetser, Gerard T Berry, Joel B Krier
A retrospective study of adult patients with noncirrhotic hyperammonemia. Journal of inherited metabolic disease 43 (6) (2020)
Andrew Ben Stergachis, Scott T Weiss, Robert C Green
Biobanks could identify medically actionable findings relevant for COVID-19 clinical care. Nature medicine 26 (7) (2020)
Andrew Ben Stergachis, Brian M Debo, Eric Haugen, L Stirling Churchman, John A Stamatoyannopoulos
Single-molecule regulatory architectures captured by chromatin fiber sequencing. Science (New York, N.Y.) 368 (6498) (2020)