Mitchell R Vollger

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 49

Top Venues

Nature

Science (New York, N.Y.)

bioRxiv : the preprint server for biology

Genome research

University of Washington (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

University of Washington Sep 15 2016

United States

PHD :: Genome Sciences

Publications

Helmut Grasberger, Alexandra M Dumitrescu, Xiao-Hui Liao, Elliott G Swanson, Roy E Weiss, Panudda Srichomkwun, Theodora Pappa, Junfeng Chen, Takashi Yoshimura, Phillip Hoffmann, Monica Malheiros França, Rebecca Tagett, Kazumichi Onigata, Sabine Costagliola, Jane Ranchalis, Mitchell R Vollger, Andrew B Stergachis, Jessica Xiao-Ling Chong, Michael J Bamshad, Guillaume Smits, Gilbert Vassart, Samuel Refetoff
STR mutations on chromosome 15q cause thyrotropin resistance by activating a primate-specific enhancer of MIR7-2/MIR1179. Nature genetics 56 (5) (2024)
Kerry L Bubb, Morgan O Hamm, Joseph K Min, Bryan Ramirez-Corona, Nicholas A Mueth, Jane Ranchalis, Mitchell R Vollger, Cole Trapnell, Josh T Cuperus, Christine Queitsch, Andrew Ben Stergachis
The regulatory potential of transposable elements in maize. bioRxiv : the preprint server for biology (2024)
Helmut Grasberger, Alexandra M Dumitrescu, Xiao-Hui Liao, Elliott G Swanson, Roy E Weiss, Panudda Srichomkwun, Theodora Pappa, Junfeng Chen, Takashi Yoshimura, Phillip Hoffmann, Monica Malheiros França, Rebecca Tagett, Kazumichi Onigata, Sabine Costagliola, Jane Ranchalis, Mitchell R Vollger, Andrew B Stergachis, Jessica Xiao-Ling Chong, Michael J Bamshad, Guillaume Smits, Gilbert Vassart, Samuel Refetoff
STR mutations on chromosome 15q cause thyrotropin resistance by activating a primate-specific enhancer of MIR7-2/MIR1179. Nature genetics 56 (5) (2024)
Stephanie C Bohaczuk, Zachary J Amador, Chang Li, Benjamin J Mallory, Elliott G Swanson, Jane Ranchalis, Mitchell R Vollger, Katherine M Munson, Tom Walsh, Morgan O Hamm, Yizi Mao, André Lieber, Andrew Ben Stergachis
Resolving the chromatin impact of mosaic variants with targeted Fiber-seq. bioRxiv : the preprint server for biology (2024)
Kerry L Bubb, Morgan O Hamm, Joseph K Min, Bryan Ramirez-Corona, Nicholas A Mueth, Jane Ranchalis, Mitchell R Vollger, Cole Trapnell, Josh T Cuperus, Christine Queitsch, Andrew Ben Stergachis
The regulatory potential of transposable elements in maize. bioRxiv : the preprint server for biology (2024)
Anupama Jha, Stephanie C Bohaczuk, Yizi Mao, Jane Ranchalis, Benjamin J Mallory, Alan T Min, Morgan O Hamm, Elliott Swanson, Danilo Dubocanin, Connor Finkbeiner, Tony Li, Dale Whittington, William Stafford Noble, Andrew Ben Stergachis, Mitchell R Vollger
DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools. Genome research (2024)
Helmut Grasberger, Alexandra M Dumitrescu, Xiao-Hui Liao, Elliott G Swanson, Roy E Weiss, Panudda Srichomkwun, Theodora Pappa, Junfeng Chen, Takashi Yoshimura, Phillip Hoffmann, Monica Malheiros França, Rebecca Tagett, Kazumichi Onigata, Sabine Costagliola, Jane Ranchalis, Mitchell R Vollger, Andrew B Stergachis, Jessica Xiao-Ling Chong, Michael J Bamshad, Guillaume Smits, Gilbert Vassart, Samuel Refetoff
STR mutations on chromosome 15q cause thyrotropin resistance by activating a primate-specific enhancer of MIR7-2/MIR1179. Nature genetics 56 (5) (2024)
Anupama Jha, Stephanie C Bohaczuk, Yizi Mao, Jane Ranchalis, Benjamin J Mallory, Alan T Min, Morgan O Hamm, Elliott Swanson, Danilo Dubocanin, Connor Finkbeiner, Tony Li, Dale Whittington, William Stafford Noble, Andrew Ben Stergachis, Mitchell R Vollger
DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools. Genome research (2024)
Helmut Grasberger, Alexandra M Dumitrescu, Xiao-Hui Liao, Elliott G Swanson, Roy E Weiss, Panudda Srichomkwun, Theodora Pappa, Junfeng Chen, Takashi Yoshimura, Phillip Hoffmann, Monica Malheiros França, Rebecca Tagett, Kazumichi Onigata, Sabine Costagliola, Jane Ranchalis, Mitchell R Vollger, Andrew B Stergachis, Jessica Xiao-Ling Chong, Michael J Bamshad, Guillaume Smits, Gilbert Vassart, Samuel Refetoff
STR mutations on chromosome 15q cause thyrotropin resistance by activating a primate-specific enhancer of MIR7-2/MIR1179. Nature genetics (2024)
Helmut Grasberger, Alexandra M Dumitrescu, Xiao-Hui Liao, Elliott G Swanson, Roy E Weiss, Panudda Srichomkwun, Theodora Pappa, Junfeng Chen, Takashi Yoshimura, Phillip Hoffmann, Monica Malheiros França, Rebecca Tagett, Kazumichi Onigata, Sabine Costagliola, Jane Ranchalis, Mitchell R Vollger, Andrew B Stergachis, Jessica Xiao-Ling Chong, Michael J Bamshad, Guillaume Smits, Gilbert Vassart, Samuel Refetoff
STR mutations on chromosome 15q cause thyrotropin resistance by activating a primate-specific enhancer of MIR7-2/MIR1179. Nature genetics 56 (5) (2024)
Kerry L Bubb, Morgan O Hamm, Joseph K Min, Bryan Ramirez-Corona, Nicholas A Mueth, Jane Ranchalis, Mitchell R Vollger, Cole Trapnell, Josh T Cuperus, Christine Queitsch, Andrew Ben Stergachis
The regulatory potential of transposable elements in maize. bioRxiv : the preprint server for biology (2024)
Stephanie C Bohaczuk, Zachary J Amador, Chang Li, Benjamin J Mallory, Elliott G Swanson, Jane Ranchalis, Mitchell R Vollger, Katherine M Munson, Tom Walsh, Morgan O Hamm, Yizi Mao, André Lieber, Andrew Ben Stergachis
Resolving the chromatin impact of mosaic variants with targeted Fiber-seq. bioRxiv : the preprint server for biology (2024)
Mitchell R Vollger, Philip C Dishuck, William T Harvey, William S DeWitt, Xavi Guitart, Michael E Goldberg, Allison N Rozanski, Julian Lucas, Mobin Asri, null null, Katherine M Munson, Alexandra P Lewis, Kendra Hoekzema, Glennis A Logsdon, David Porubsky, Benedict Paten, Kelley Harris, PingHsun Hsieh, Evan E Eichler
Increased mutation and gene conversion within human segmental duplications. Nature 617 (7960) (2023)
Mitchell R Vollger, Jonas Korlach, Kiara C Eldred, Elliott G Swanson, Jason G Underwood, Yong-Han Hank Cheng, Jane Ranchalis, Yizi Mao, Elizabeth E Blue, Ulrike Schwarze, Katherine M Munson, Christopher T Saunders, Aaron M Wenger, Aimee Allworth, Sirisak Chanprasert, Brittney L Duerden, Ian Glass, Martha Horike-Pyne, Michelle Kim, Kathleen A Leppig, Ian J McLaughlin, Jessica Ogawa, Elisabeth A Rosenthal, Sam Sheppeard, Stephanie M Sherman, Samuel Strohbehn, Amy L Yuen, null null, null null, Thomas A Reh, Peter H Byers, Michael J Bamshad, Fuki M Hisama, Gail P Jarvik, Yasemin Sancak, Katrina M Dipple, Andrew Ben Stergachis
Synchronized long-read genome, methylome, epigenome, and transcriptome for resolving a Mendelian condition. bioRxiv : the preprint server for biology (2023)
Wen-Wei Liao, Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Glenn Hickey, Shuangjia Lu, Julian K Lucas, Jean Monlong, Haley J Abel, Silvia Buonaiuto, Xian H Chang, Haoyu Cheng, Justin Chu, Vincenza Colonna, Jordan M Eizenga, Xiaowen Feng, Christian Fischer, Robert S Fulton, Shilpa Garg, Cristian Groza, Andrea Guarracino, William T Harvey, Simon Heumos, Kerstin Howe, Miten Jain, Tsung-Yu Lu, Charles Markello, Fergal J Martin, Matthew W Mitchell, Katherine M Munson, Moses Njagi Mwaniki, Adam M Novak, Hugh E Olsen, Trevor Pesout, David Porubsky, Pjotr Prins, Jonas A Sibbesen, Jouni Sirén, Chad Tomlinson, Flavia Villani, Mitchell R Vollger, Lucinda L Antonacci-Fulton, Gunjan Baid, Carl A Baker, Anastasiya Belyaeva, Konstantinos Billis, Andrew Carroll, Pi-Chuan Chang, Sarah Cody, Daniel E Cook, Robert M Cook-Deegan, Omar E Cornejo, Mark E Diekhans, Peter Ebert, Susan Fairley, Olivier Fedrigo, Adam L Felsenfeld, Giulio Formenti, Adam Frankish, Yan Gao, Nanibaa' A Garrison, Carlos Garcia Giron, Richard E Green, Leanne Haggerty, Kendra Hoekzema, Thibaut Hourlier, Hanlee P Ji, Eimear E Kenny, Barbara A Koenig, Alexey Kolesnikov, Jan O Korbel, Jennifer Kordosky, Sergey Koren, HoJoon Lee, Alexandra P Lewis, Hugo Magalhães, Santiago Marco-Sola, Pierre Marijon, Ann McCartney, Jennifer McDaniel, Jacquelyn Mountcastle, Maria Nattestad, Sergey Nurk, Nathan D Olson, Alice B Popejoy, Daniela Puiu, Mikko Rautiainen, Allison A Regier, Arang Rhie, Samuel Sacco, Ashley D Sanders, Valerie A Schneider, Baergen I Schultz, Kishwar Shafin, Michael W Smith, Heidi J Sofia, Ahmad N Abou Tayoun, Françoise Thibaud-Nissen, Francesca Floriana Tricomi, Justin Wagner, Brian P Walenz, Jonathan M D Wood, Aleksey V Zimin, Guillaume Bourque, Mark J P Chaisson, Paul Flicek, Adam M Phillippy, Justin M Zook, Evan E Eichler, David Haussler, Ting Wang, Erich D Jarvis, Karen H Miga, Erik P Garrison, Tobias Marschall, Ira M Hall, Heng Li, Benedict Paten
A draft human pangenome reference. Nature 617 (7960) (2023)
Arang Rhie, Sergey Nurk, Monika Cechova, Savannah J Hoyt, Dylan J Taylor, Nicolas Altemose, Paul W Hook, Sergey Koren, Mikko Rautiainen, Ivan A Alexandrov, Jamie Allen, Mobin Asri, Andrey V Bzikadze, Nae-Chyun Chen, Chen-Shan Chin, Mark E Diekhans, Paul Flicek, Giulio Formenti, Arkarachai Fungtammasan, Carlos Garcia Giron, Erik P Garrison, Ariel Gershman, Jennifer L Gerton, Patrick G S Grady, Andrea Guarracino, Leanne Haggerty, Reza Halabian, Nancy F Hansen, Robert Harris, Gabrielle A Hartley, William T Harvey, Marina Haukness, Jakob Heinz, Thibaut Hourlier, Robert M Hubley, Sarah E Hunt, Stephen Hwang, Miten Jain, Rupesh K Kesharwani, Alexandra P Lewis, Heng Li, Glennis A Logsdon, Julian K Lucas, Wojciech Makalowski, Christopher Markovic, Fergal J Martin, Ann M Mc Cartney, Rajiv C McCoy, Jennifer McDaniel, Brandy M McNulty, Paul Medvedev, Alla Mikheenko, Katherine M Munson, Terence D Murphy, Hugh E Olsen, Nathan D Olson, Luis F Paulin, David Porubsky, Tamara A Potapova, Fedor D Ryabov, Steven L Salzberg, Michael E G Sauria, Fritz J Sedlazeck, Kishwar Shafin, Valery A Shepelev, Alaina Shumate, Jessica M Storer, Likhitha Surapaneni, Angela M Taravella Oill, Françoise Thibaud-Nissen, Winston Timp, Marta Tomaszkiewicz, Mitchell R Vollger, Brian P Walenz, Allison C Watwood, Matthias H Weissensteiner, Aaron M Wenger, Melissa A Wilson, Samantha Zarate, Yiming Zhu, Justin M Zook, Evan E Eichler, Rachel J O'Neill, Michael C Schatz, Karen H Miga, Kateryna D Makova, Adam M Phillippy
The complete sequence of a human Y chromosome. Nature (2023)
David Porubsky, Mitchell R Vollger, William T Harvey, Allison N Rozanski, Peter Ebert, Glenn Hickey, Patrick Hasenfeld, Ashley D Sanders, Catherine Stober, null null, Jan O Korbel, Benedict Paten, Tobias Marschall, Evan E Eichler
Gaps and complex structurally variant loci in phased genome assemblies. Genome research (2023)
Anupama Jha, Stephanie C Bohaczuk, Yizi Mao, Jane Ranchalis, Benjamin J Mallory, Alan T Min, Morgan O Hamm, Elliott G Swanson, Connor Finkbeiner, Tony Li, Dale Whittington, William Stafford Noble, Andrew Ben Stergachis, Mitchell R Vollger
Fibertools: fast and accurate DNA-m6A calling using single-molecule long-read sequencing. bioRxiv : the preprint server for biology (2023)
Mitchell R Vollger, Philip C Dishuck, William T Harvey, William S DeWitt, Xavi Guitart, Michael E Goldberg, Allison N Rozanski, Julian Lucas, Mobin Asri, null null, Katherine M Munson, Alexandra P Lewis, Kendra Hoekzema, Glennis A Logsdon, David Porubsky, Benedict Paten, Kelley Harris, PingHsun Hsieh, Evan E Eichler
Increased mutation and gene conversion within human segmental duplications. Nature 617 (7960) (2023)
Wen-Wei Liao, Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Glenn Hickey, Shuangjia Lu, Julian K Lucas, Jean Monlong, Haley J Abel, Silvia Buonaiuto, Xian H Chang, Haoyu Cheng, Justin Chu, Vincenza Colonna, Jordan M Eizenga, Xiaowen Feng, Christian Fischer, Robert S Fulton, Shilpa Garg, Cristian Groza, Andrea Guarracino, William T Harvey, Simon Heumos, Kerstin Howe, Miten Jain, Tsung-Yu Lu, Charles Markello, Fergal J Martin, Matthew W Mitchell, Katherine M Munson, Moses Njagi Mwaniki, Adam M Novak, Hugh E Olsen, Trevor Pesout, David Porubsky, Pjotr Prins, Jonas A Sibbesen, Jouni Sirén, Chad Tomlinson, Flavia Villani, Mitchell R Vollger, Lucinda L Antonacci-Fulton, Gunjan Baid, Carl A Baker, Anastasiya Belyaeva, Konstantinos Billis, Andrew Carroll, Pi-Chuan Chang, Sarah Cody, Daniel E Cook, Robert M Cook-Deegan, Omar E Cornejo, Mark E Diekhans, Peter Ebert, Susan Fairley, Olivier Fedrigo, Adam L Felsenfeld, Giulio Formenti, Adam Frankish, Yan Gao, Nanibaa' A Garrison, Carlos Garcia Giron, Richard E Green, Leanne Haggerty, Kendra Hoekzema, Thibaut Hourlier, Hanlee P Ji, Eimear E Kenny, Barbara A Koenig, Alexey Kolesnikov, Jan O Korbel, Jennifer Kordosky, Sergey Koren, HoJoon Lee, Alexandra P Lewis, Hugo Magalhães, Santiago Marco-Sola, Pierre Marijon, Ann McCartney, Jennifer McDaniel, Jacquelyn Mountcastle, Maria Nattestad, Sergey Nurk, Nathan D Olson, Alice B Popejoy, Daniela Puiu, Mikko Rautiainen, Allison A Regier, Arang Rhie, Samuel Sacco, Ashley D Sanders, Valerie A Schneider, Baergen I Schultz, Kishwar Shafin, Michael W Smith, Heidi J Sofia, Ahmad N Abou Tayoun, Françoise Thibaud-Nissen, Francesca Floriana Tricomi, Justin Wagner, Brian P Walenz, Jonathan M D Wood, Aleksey V Zimin, Guillaume Bourque, Mark J P Chaisson, Paul Flicek, Adam M Phillippy, Justin M Zook, Evan E Eichler, David Haussler, Ting Wang, Erich D Jarvis, Karen H Miga, Erik P Garrison, Tobias Marschall, Ira M Hall, Heng Li, Benedict Paten
A draft human pangenome reference. Nature 617 (7960) (2023)
Wen-Wei Liao, Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Glenn Hickey, Shuangjia Lu, Julian K Lucas, Jean Monlong, Haley J Abel, Silvia Buonaiuto, Xian H Chang, Haoyu Cheng, Justin Chu, Vincenza Colonna, Jordan M Eizenga, Xiaowen Feng, Christian Fischer, Robert S Fulton, Shilpa Garg, Cristian Groza, Andrea Guarracino, William T Harvey, Simon Heumos, Kerstin Howe, Miten Jain, Tsung-Yu Lu, Charles Markello, Fergal J Martin, Matthew W Mitchell, Katherine M Munson, Moses Njagi Mwaniki, Adam M Novak, Hugh E Olsen, Trevor Pesout, David Porubsky, Pjotr Prins, Jonas A Sibbesen, Jouni Sirén, Chad Tomlinson, Flavia Villani, Mitchell R Vollger, Lucinda L Antonacci-Fulton, Gunjan Baid, Carl A Baker, Anastasiya Belyaeva, Konstantinos Billis, Andrew Carroll, Pi-Chuan Chang, Sarah Cody, Daniel E Cook, Robert M Cook-Deegan, Omar E Cornejo, Mark E Diekhans, Peter Ebert, Susan Fairley, Olivier Fedrigo, Adam L Felsenfeld, Giulio Formenti, Adam Frankish, Yan Gao, Nanibaa' A Garrison, Carlos Garcia Giron, Richard E Green, Leanne Haggerty, Kendra Hoekzema, Thibaut Hourlier, Hanlee P Ji, Eimear E Kenny, Barbara A Koenig, Alexey Kolesnikov, Jan O Korbel, Jennifer Kordosky, Sergey Koren, HoJoon Lee, Alexandra P Lewis, Hugo Magalhães, Santiago Marco-Sola, Pierre Marijon, Ann McCartney, Jennifer McDaniel, Jacquelyn Mountcastle, Maria Nattestad, Sergey Nurk, Nathan D Olson, Alice B Popejoy, Daniela Puiu, Mikko Rautiainen, Allison A Regier, Arang Rhie, Samuel Sacco, Ashley D Sanders, Valerie A Schneider, Baergen I Schultz, Kishwar Shafin, Michael W Smith, Heidi J Sofia, Ahmad N Abou Tayoun, Françoise Thibaud-Nissen, Francesca Floriana Tricomi, Justin Wagner, Brian P Walenz, Jonathan M D Wood, Aleksey V Zimin, Guillaume Bourque, Mark J P Chaisson, Paul Flicek, Adam M Phillippy, Justin M Zook, Evan E Eichler, David Haussler, Ting Wang, Erich D Jarvis, Karen H Miga, Erik P Garrison, Tobias Marschall, Ira M Hall, Heng Li, Benedict Paten
A draft human pangenome reference. Nature 617 (7960) (2023)
David Porubsky, Mitchell R Vollger, William T Harvey, Allison N Rozanski, Peter Ebert, Glenn Hickey, Patrick Hasenfeld, Ashley D Sanders, Catherine Stober, null null, Jan O Korbel, Benedict Paten, Tobias Marschall, Evan E Eichler
Gaps and complex structurally variant loci in phased genome assemblies. Genome research 33 (4) (2023)
Anupama Jha, Stephanie C Bohaczuk, Yizi Mao, Jane Ranchalis, Benjamin J Mallory, Alan T Min, Morgan O Hamm, Elliott G Swanson, Connor Finkbeiner, Tony Li, Dale Whittington, William Stafford Noble, Andrew Ben Stergachis, Mitchell R Vollger
Fibertools: fast and accurate DNA-m6A calling using single-molecule long-read sequencing. bioRxiv : the preprint server for biology (2023)
Mitchell R Vollger, Philip C Dishuck, William T Harvey, William S DeWitt, Xavi Guitart, Michael E Goldberg, Allison N Rozanski, Julian Lucas, Mobin Asri, null null, Katherine M Munson, Alexandra P Lewis, Kendra Hoekzema, Glennis A Logsdon, David Porubsky, Benedict Paten, Kelley Harris, PingHsun Hsieh, Evan E Eichler
Increased mutation and gene conversion within human segmental duplications. Nature 617 (7960) (2023)
Wen-Wei Liao, Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Glenn Hickey, Shuangjia Lu, Julian K Lucas, Jean Monlong, Haley J Abel, Silvia Buonaiuto, Xian H Chang, Haoyu Cheng, Justin Chu, Vincenza Colonna, Jordan M Eizenga, Xiaowen Feng, Christian Fischer, Robert S Fulton, Shilpa Garg, Cristian Groza, Andrea Guarracino, William T Harvey, Simon Heumos, Kerstin Howe, Miten Jain, Tsung-Yu Lu, Charles Markello, Fergal J Martin, Matthew W Mitchell, Katherine M Munson, Moses Njagi Mwaniki, Adam M Novak, Hugh E Olsen, Trevor Pesout, David Porubsky, Pjotr Prins, Jonas A Sibbesen, Jouni Sirén, Chad Tomlinson, Flavia Villani, Mitchell R Vollger, Lucinda L Antonacci-Fulton, Gunjan Baid, Carl A Baker, Anastasiya Belyaeva, Konstantinos Billis, Andrew Carroll, Pi-Chuan Chang, Sarah Cody, Daniel E Cook, Robert M Cook-Deegan, Omar E Cornejo, Mark E Diekhans, Peter Ebert, Susan Fairley, Olivier Fedrigo, Adam L Felsenfeld, Giulio Formenti, Adam Frankish, Yan Gao, Nanibaa' A Garrison, Carlos Garcia Giron, Richard E Green, Leanne Haggerty, Kendra Hoekzema, Thibaut Hourlier, Hanlee P Ji, Eimear E Kenny, Barbara A Koenig, Alexey Kolesnikov, Jan O Korbel, Jennifer Kordosky, Sergey Koren, HoJoon Lee, Alexandra P Lewis, Hugo Magalhães, Santiago Marco-Sola, Pierre Marijon, Ann McCartney, Jennifer McDaniel, Jacquelyn Mountcastle, Maria Nattestad, Sergey Nurk, Nathan D Olson, Alice B Popejoy, Daniela Puiu, Mikko Rautiainen, Allison A Regier, Arang Rhie, Samuel Sacco, Ashley D Sanders, Valerie A Schneider, Baergen I Schultz, Kishwar Shafin, Michael W Smith, Heidi J Sofia, Ahmad N Abou Tayoun, Françoise Thibaud-Nissen, Francesca Floriana Tricomi, Justin Wagner, Brian P Walenz, Jonathan M D Wood, Aleksey V Zimin, Guillaume Bourque, Mark J P Chaisson, Paul Flicek, Adam M Phillippy, Justin M Zook, Evan E Eichler, David Haussler, Ting Wang, Erich D Jarvis, Karen H Miga, Erik P Garrison, Tobias Marschall, Ira M Hall, Heng Li, Benedict Paten
A draft human pangenome reference. Nature 617 (7960) (2023)
Mitchell R Vollger, Philip C Dishuck, William T Harvey, William S DeWitt, Xavi Guitart, Michael E Goldberg, Allison N Rozanski, Julian Lucas, Mobin Asri, null null, Katherine M Munson, Alexandra P Lewis, Kendra Hoekzema, Glennis A Logsdon, David Porubsky, Benedict Paten, Kelley Harris, PingHsun Hsieh, Evan E Eichler
Increased mutation and gene conversion within human segmental duplications. Nature 617 (7960) (2023)
Mitchell R Vollger, Philip C Dishuck, William T Harvey, William S DeWitt, Xavi Guitart, Michael E Goldberg, Allison N Rozanski, Julian Lucas, Mobin Asri, null null, Katherine M Munson, Alexandra P Lewis, Kendra Hoekzema, Glennis A Logsdon, David Porubsky, Benedict Paten, Kelley Harris, PingHsun Hsieh, Evan E Eichler
Increased mutation and gene conversion within human segmental duplications. Nature 617 (7960) (2023)
David Porubsky, Mitchell R Vollger, William T Harvey, Allison N Rozanski, Peter Ebert, Glenn Hickey, Patrick Hasenfeld, Ashley D Sanders, Catherine Stober, null null, Jan O Korbel, Benedict Paten, Tobias Marschall, Evan E Eichler
Gaps and complex structurally variant loci in phased genome assemblies. Genome research 33 (4) (2023)
David Porubsky, Mitchell R Vollger, William T Harvey, Allison N Rozanski, Peter Ebert, Glenn Hickey, Patrick Hasenfeld, Ashley D Sanders, Catherine Stober, null null, Jan O Korbel, Benedict Paten, Tobias Marschall, Evan E Eichler
Gaps and complex structurally variant loci in phased genome assemblies. Genome research (2023)
Savannah J Hoyt, Jessica M Storer, Gabrielle A Hartley, Patrick G S Grady, Ariel Gershman, Leonardo Gomes de Lima, Charles Limouse, Reza Halabian, Luke Wojenski, Matias Rodriguez, Nicolas Altemose, Arang Rhie, Leighton J Core, Jennifer L Gerton, Wojciech Makalowski, Daniel R Olson, Jeb Rosen, Arian F A Smit, Aaron F Straight, Mitchell R Vollger, Travis J Wheeler, Michael C Schatz, Evan E Eichler, Adam M Phillippy, Winston Timp, Karen H Miga, Rachel J O'Neill
From telomere to telomere: The transcriptional and epigenetic state of human repeat elements. Science (New York, N.Y.) 376 (6588) (2022)
Erich D Jarvis, Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Jonathan M D Wood, Alan Tracey, Françoise Thibaud-Nissen, Mitchell R Vollger, David Porubsky, Haoyu Cheng, Mobin Asri, Glennis A Logsdon, Paolo Carnevali, Mark J P Chaisson, Chen-Shan Chin, Sarah Cody, Joanna Collins, Peter Ebert, Merly Escalona, Olivier Fedrigo, Robert S Fulton, Lucinda L Fulton, Shilpa Garg, Jennifer L Gerton, Jay Ghurye, Anastasiya Granat, Richard E Green, William Harvey, Patrick Hasenfeld, Alex Hastie, Marina Haukness, Erich B Jaeger, Miten Jain, Melanie Kirsche, Mikhail Kolmogorov, Jan O Korbel, Sergey Koren, Jonas Korlach, Joyce Lee, Daofeng Li, Tina Lindsay, Julian Lucas, Feng Luo, Tobias Marschall, Matthew W Mitchell, Jennifer McDaniel, Fan Nie, Hugh E Olsen, Nathan D Olson, Trevor Pesout, Tamara Potapova, Daniela Puiu, Allison Regier, Jue Ruan, Steven L Salzberg, Ashley D Sanders, Michael C Schatz, Anthony Schmitt, Valerie A Schneider, Siddarth Selvaraj, Kishwar Shafin, Alaina Shumate, Nathan O Stitziel, Catherine Stober, James Torrance, Justin Wagner, Jian-Xin Wang, Aaron Wenger, Chuan-Le Xiao, Aleksey V Zimin, Guo-Jie Zhang, Ting Wang, Heng Li, Erik Garrison, David Haussler, Ira Hall, Justin M Zook, Evan E Eichler, Adam M Phillippy, Benedict Paten, Kerstin Howe, Karen H Miga, null null
Semi-automated assembly of high-quality diploid human reference genomes. Nature 611 (7936) (2022)
Sergey Nurk, Sergey Koren, Arang Rhie, Mikko Rautiainen, Andrey V Bzikadze, Alla Mikheenko, Mitchell R Vollger, Nicolas Altemose, Lev I Uralsky, Ariel Gershman, Sergey Aganezov, Savannah J Hoyt, Mark E Diekhans, Glennis A Logsdon, Michael Alonge, Stylianos E Antonarakis, Matthew Borchers, Gerard G Bouffard, Shelise Y Brooks, Gina V Caldas, Nae-Chyun Chen, Haoyu Cheng, Chen-Shan Chin, William Chow, Leonardo Gomes de Lima, Philip C Dishuck, Richard Durbin, Tatiana Dvorkina, Ian T Fiddes, Giulio Formenti, Robert S Fulton, Arkarachai Fungtammasan, Erik P Garrison, Patrick G S Grady, Tina A Graves-Lindsay, Ira M Hall, Nancy F Hansen, Gabrielle A Hartley, Marina Haukness, Kerstin Howe, Michael W Hunkapiller, Chirag Jain, Miten Jain, Erich D Jarvis, Peter Kerpedjiev, Melanie Kirsche, Mikhail Kolmogorov, Jonas Korlach, Milinn Kremitzki, Heng Li, Valerie V Maduro, Tobias Marschall, Ann M McCartney, Jennifer McDaniel, Danny E Miller, May Christine V Malicdan, Eugene W Myers, Nathan D Olson, Benedict Paten, Paul Peluso, Pavel A Pevzner, David Porubsky, Tamara A Potapova, Evgeny I Rogaev, Jeffrey A Rosenfeld, Steven L Salzberg, Valerie A Schneider, Fritz J Sedlazeck, Kishwar Shafin, Colin J Shew, Alaina Shumate, Ying Sims, Arian F A Smit, Daniela C Soto, Ivan Sović, Jessica M Storer, Aaron Streets, Beth A Sullivan, Françoise Thibaud-Nissen, James W Torrance, Justin Wagner, Brian P Walenz, Aaron M Wenger, Jonathan M D Wood, Chunlin Xiao, Stephanie M Yan, Alice C Young, Samantha Zarate, Urvashi Surti, Rajiv C McCoy, Megan Y Dennis, Ivan A Alexandrov, Jennifer L Gerton, Rachel J O'Neill, Winston Timp, Justin M Zook, Michael C Schatz, Evan E Eichler, Karen H Miga, Adam M Phillippy
The complete sequence of a human genome. Science (New York, N.Y.) 376 (6588) (2022)
Sergey Aganezov, Stephanie M Yan, Daniela C Soto, Melanie Kirsche, Samantha Zarate, Pavel Avdeyev, Dylan J Taylor, Kishwar Shafin, Alaina Shumate, Chunlin Xiao, Justin Wagner, Jennifer McDaniel, Nathan D Olson, Michael E G Sauria, Mitchell R Vollger, Arang Rhie, Melissa Meredith, Skylar Martin, Joyce Lee, Sergey Koren, Jeffrey A Rosenfeld, Benedict Paten, Ryan Layer, Chen-Shan Chin, Fritz J Sedlazeck, Nancy F Hansen, Danny E Miller, Adam M Phillippy, Karen H Miga, Rajiv C McCoy, Megan Y Dennis, Justin M Zook, Michael C Schatz
A complete reference genome improves analysis of human genetic variation. Science (New York, N.Y.) 376 (6588) (2022)
Ariel Gershman, Michael E G Sauria, Xavi Guitart, Mitchell R Vollger, Paul W Hook, Savannah J Hoyt, Miten Jain, Alaina Shumate, Roham Razaghi, Sergey Koren, Nicolas Altemose, Gina V Caldas, Glennis A Logsdon, Arang Rhie, Evan E Eichler, Michael C Schatz, Rachel J O'Neill, Adam M Phillippy, Karen H Miga, Winston Timp
Epigenetic patterns in a complete human genome. Science (New York, N.Y.) 376 (6588) (2022)
Mitchell R Vollger, Peter Kerpedjiev, Adam M Phillippy, Evan E Eichler
StainedGlass: interactive visualization of massive tandem repeat structures with identity heatmaps. Bioinformatics (Oxford, England) 38 (7) (2022)
Nicolas Altemose, Glennis A Logsdon, Andrey V Bzikadze, Pragya Sidhwani, Sasha A Langley, Gina V Caldas, Savannah J Hoyt, Lev I Uralsky, Fedor D Ryabov, Colin J Shew, Michael E G Sauria, Matthew Borchers, Ariel Gershman, Alla Mikheenko, Valery A Shepelev, Tatiana Dvorkina, Olga Kunyavskaya, Mitchell R Vollger, Arang Rhie, Ann M McCartney, Mobin Asri, Ryan Lorig-Roach, Kishwar Shafin, Julian K Lucas, Sergey Aganezov, Daniel R Olson, Leonardo Gomes de Lima, Tamara A Potapova, Gabrielle A Hartley, Marina Haukness, Peter Kerpedjiev, Fedor E Gusev, Kristof Tigyi, Shelise Brooks, Alice C Young, Sergey Nurk, Sergey Koren, Sofie R Salama, Benedict Paten, Evgeny I Rogaev, Aaron Streets, Gary H Karpen, Abby F Dernburg, Beth A Sullivan, Aaron F Straight, Travis J Wheeler, Jennifer L Gerton, Evan E Eichler, Adam M Phillippy, Winston Timp, Megan Y Dennis, Rachel J O'Neill, Justin M Zook, Michael C Schatz, Pavel A Pevzner, Mark E Diekhans, Charles H Langley, Ivan A Alexandrov, Karen H Miga
Complete genomic and epigenetic maps of human centromeres. Science (New York, N.Y.) 376 (6588) (2022)
Mitchell R Vollger, Xavi Guitart, Philip C Dishuck, Ludovica Mercuri, William T Harvey, Ariel Gershman, Mark E Diekhans, Arvis Sulovari, Katherine M Munson, Alexandra P Lewis, Kendra Hoekzema, David Porubsky, Ruiyang Li, Sergey Nurk, Sergey Koren, Karen H Miga, Adam M Phillippy, Winston Timp, Mario Ventura, Evan E Eichler
Segmental duplications and their variation in a complete human genome. Science (New York, N.Y.) 376 (6588) (2022)
Glennis A Logsdon, Mitchell R Vollger, PingHsun Hsieh, Yafei Mao, Mikhail A Liskovykh, Sergey Koren, Sergey Nurk, Ludovica Mercuri, Philip C Dishuck, Arang Rhie, Leonardo Gomes de Lima, Tatiana Dvorkina, David Porubsky, William T Harvey, Alla Mikheenko, Andrey V Bzikadze, Milinn Kremitzki, Tina A Graves-Lindsay, Chirag Jain, Kendra Hoekzema, Shwetha C Murali, Katherine M Munson, Carl Baker, Melanie Sorensen, Alexandra M Lewis, Urvashi Surti, Jennifer L Gerton, Vladimir Larionov, Mario Ventura, Karen H Miga, Adam M Phillippy, Evan E Eichler
The structure, function and evolution of a complete human chromosome 8. Nature 593 (7857) (2021)
PingHsun Hsieh, Vy Dang, Mitchell R Vollger, Yafei Mao, Tzu-Hsueh Huang, Philip C Dishuck, Carl Baker, Stuart Cantsilieris, Alexandra P Lewis, Katherine M Munson, Melanie Sorensen, AnneMarie E Welch, Jason G Underwood, Evan E Eichler
Evidence for opposing selective forces operating on human-specific duplicated TCAF genes in Neanderthals and humans. Nature communications 12 (1) (2021)
Wesley C Warren, Ronald Alan Harris, Marina Haukness, Ian T Fiddes, Shwetha C Murali, Jason D Fernandes, Philip C Dishuck, Jessica M Storer, Muthuswamy Raveendran, LaDeana W Hillier, David Porubsky, Yafei Mao, David Gordon, Mitchell R Vollger, Alexandra P Lewis, Katherine M Munson, Elizabeth DeVogelaere, Joel Armstrong, Mark E Diekhans, Jerilyn A Walker, Chad Tomlinson, Tina A Graves-Lindsay, Milinn Kremitzki, Sofie R Salama, Peter A Audano, Merly Escalona, Nicholas W Maurer, Francesca Antonacci, Ludovica Mercuri, Flavia Angela Maria Maggiolini, Claudia Rita Catacchio, Jason G Underwood, David H O'Connor, Ashley D Sanders, Jan O Korbel, Betsy M Ferguson, H Michael Kubisch, Louis J Picker, Ned H Kalin, Douglas Rosene, Jon E Levine, David H Abbott, Stanton B Gray, Mar M Sanchez, Zsofia A Kovacs-Balint, Joseph W Kemnitz, Sara M Thomasy, Jeffrey A Roberts, Erin L Kinnally, John P Capitanio, Jesse A G Skene, Michael Louis Platt, Shelley A Cole, Richard E Green, Mario Ventura, Roger W Wiseman, Benedict Paten, Mark A Batzer, Jeffrey Rogers, Evan E Eichler
Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility. Science (New York, N.Y.) 370 (6523) (2021)
Sergey Nurk, Brian P Walenz, Arang Rhie, Mitchell R Vollger, Glennis A Logsdon, Robert Grothe, Karen H Miga, Evan E Eichler, Adam M Phillippy, Sergey Koren
HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads. Genome research 30 (9) (2020)
Glennis A Logsdon, Mitchell R Vollger, Evan E Eichler
Long-read human genome sequencing and its applications. Nature reviews. Genetics 21 (10) (2020)
Kishwar Shafin, Trevor Pesout, Ryan Lorig-Roach, Marina Haukness, Hugh E Olsen, Colleen Bosworth, Joel Armstrong, Kristof Tigyi, Nicholas W Maurer, Sergey Koren, Fritz J Sedlazeck, Tobias Marschall, Simon Mayes, Vania Costa, Justin M Zook, Kelvin J Liu, Duncan Kilburn, Melanie Sorensen, Katherine M Munson, Mitchell R Vollger, Jean Monlong, Erik Garrison, Evan E Eichler, Sofie Salama, David Haussler, Richard E Green, Mark Akeson, Adam M Phillippy, Karen H Miga, Paolo Carnevali, Miten Jain, Benedict Paten
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes. Nature biotechnology 38 (9) (2020)
David Porubsky, Peter Ebert, Peter A Audano, Mitchell R Vollger, William T Harvey, Pierre Marijon, Jana Ebler, Katherine M Munson, Melanie Sorensen, Arvis Sulovari, Marina Haukness, Maryam Ghareghani, null null, Peter M Lansdorp, Benedict Paten, Scott E Devine, Ashley D Sanders, Charles Lee, Mark J P Chaisson, Jan O Korbel, Evan E Eichler, Tobias Marschall
Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads. Nature biotechnology 39 (3) (2020)
Karen H Miga, Sergey Koren, Arang Rhie, Mitchell R Vollger, Ariel Gershman, Andrey Bzikadze, Shelise Brooks, Edmund Howe, David Porubsky, Glennis A Logsdon, Valerie A Schneider, Tamara Potapova, Jonathan Wood, William Chow, Joel Armstrong, Jeanne Fredrickson, Evgenia Pak, Kristof Tigyi, Milinn Kremitzki, Christopher Markovic, Valerie Maduro, Amalia Dutra, Gerard G Bouffard, Alexander M Chang, Nancy F Hansen, Amy B Wilfert, Françoise Thibaud-Nissen, Anthony D Schmitt, Jon-Matthew Belton, Siddarth Selvaraj, Megan Y Dennis, Daniela C Soto, Ruta Sahasrabudhe, Gulhan Kaya, Josh Quick, Nicholas J Loman, Nadine Holmes, Matthew William Loose, Urvashi Surti, Rosa Ana Risques, Tina A Graves Lindsay, Robert Fulton, Ira M Hall, Benedict Paten, Kerstin Howe, Winston Timp, Alice Young, May Christine V Malicdan, Pavel A Pevzner, Jennifer L Gerton, Beth A Sullivan, Evan E Eichler, Adam M Phillippy
Telomere-to-telomere assembly of a complete human X chromosome. Nature 585 (7823) (2020)
PingHsun Hsieh, Mitchell R Vollger, Vy Dang, David Porubsky, Carl Baker, Stuart Cantsilieris, Kendra Hoekzema, Alexandra P Lewis, Katherine M Munson, Melanie Sorensen, Zev N Kronenberg, Shwetha Murali, Bradley J Nelson, Giorgia Chiatante, Flavia Angela Maria Maggiolini, Hélène Blanché, Jason G Underwood, Francesca Antonacci, Jean-François Deleuze, Evan E Eichler
Adaptive archaic introgression of copy number variants and the discovery of previously unknown human genes. Science (New York, N.Y.) 366 (6463) (2020)
Mitchell R Vollger, Glennis A Logsdon, Peter A Audano, Arvis Sulovari, David Porubsky, Paul Peluso, Aaron M Wenger, Gregory T Concepcion, Zev N Kronenberg, Katherine M Munson, Carl Baker, Ashley D Sanders, Diana C J Spierings, Peter M Lansdorp, Urvashi Surti, Michael W Hunkapiller, Evan E Eichler
Improved assembly and variant detection of a haploid human genome using single-molecule, high-fidelity long reads. Annals of human genetics 84 (2) (2019)
Flavia Angela Maria Maggiolini, Stuart Cantsilieris, Pietro D'Addabbo, Michele Manganelli, Bradley P Coe, Beth L Dumont, Ashley D Sanders, Andy Wing Chun Pang, Mitchell R Vollger, Orazio Palumbo, Pietro Palumbo, Maria Accadia, Massimo Carella, Evan E Eichler, Francesca Antonacci
Genomic inversions and GOLGA core duplicons underlie disease instability at the 15q25 locus. PLoS genetics 15 (3) (2019)
Mitchell R Vollger, Philip C Dishuck, Melanie Sorensen, AnneMarie E Welch, Vy Dang, Max L Dougherty, Tina A Graves-Lindsay, Richard K Wilson, Mark J P Chaisson, Evan E Eichler
Long-read sequence and assembly of segmental duplications. Nature methods 16 (1) (2018)

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Mitchell R Vollger