Josh T Cuperus (Josh Cuperus)

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 24

Top Topics

Arabidopsis Thaliana

Gene Expression

High Throughput Sequencing

Top Venues

bioRxiv : the preprint server for biology

Nature communications

Genome research

This page only lists publications with an associated author ORCID identifier.

Publications

Sayeh Gorjifard, Tobias Jores, Jackson Tonnies, Nicholas A Mueth, Kerry Bubb, Travis Wrightsman, Edward S Buckler, Stanley Fields, Josh T Cuperus, Christine Queitsch
Arabidopsis and maize terminator strength is determined by GC content, polyadenylation motifs and cleavage probability. Nature communications 15 (1) (2024)
Sayeh Gorjifard, Tobias Jores, Jackson Tonnies, Nicholas A Mueth, Kerry Bubb, Travis Wrightsman, Edward S Buckler, Stanley Fields, Josh T Cuperus, Christine Queitsch
Arabidopsis and maize terminator strength is determined by GC content, polyadenylation motifs and cleavage probability. Nature communications 15 (1) (2024)
Sayeh Gorjifard, Tobias Jores, Jackson Tonnies, Nicholas A Mueth, Kerry Bubb, Travis Wrightsman, Edward S Buckler, Stanley Fields, Josh T Cuperus, Christine Queitsch
Arabidopsis and maize terminator strength is determined by GC content, polyadenylation motifs and cleavage probability. Nature communications 15 (1) (2024)
Tobias Jores, Jackson Tonnies, Nicholas A Mueth, Andrew Romanowski, Stanley Fields, Josh T Cuperus, Christine Queitsch
Plant enhancers exhibit both cooperative and additive interactions among their functional elements. The Plant cell 36 (7) (2024)
Kerry L Bubb, Morgan O Hamm, Joseph K Min, Bryan Ramirez-Corona, Nicholas A Mueth, Jane Ranchalis, Mitchell R Vollger, Cole Trapnell, Josh T Cuperus, Christine Queitsch, Andrew Ben Stergachis
The regulatory potential of transposable elements in maize. bioRxiv : the preprint server for biology (2024)
Hiroshi Takagi, Nayoung Lee, Andrew K Hempton, Savita Purusuwashi, Michitaka Notaguchi, Kota Yamauchi, Kazumasa Shirai, Yaichi Kawakatsu, Susumu Uehara, William G Albers, Benjamin L R Downing, Shogo Ito, Takamasa Suzuki, Takakazu Matsuura, Izumi C Mori, Nobutaka Mitsuda, Daisuke Kurihara, Tomonao Matsushita, Young Hun Song, Yoshikatsu Sato, Mika Nomoto, Yasuomi Tada, Kousuke Hanada, Josh T Cuperus, Christine Queitsch, Takato Imaizumi
Florigen-producing cells express FPF1-LIKE PROTEIN 1 that accelerates flowering and stem growth in long days with sunlight red/far-red ratio in Arabidopsis . bioRxiv : the preprint server for biology (2024)
Sayeh Gorjifard, Tobias Jores, Jackson Tonnies, Nicholas A Mueth, Kerry Bubb, Travis Wrightsman, Edward S Buckler, Stanley Fields, Josh T Cuperus, Christine Queitsch
Arabidopsis and maize terminator strength is determined by GC content, polyadenylation motifs and cleavage probability. Nature communications 15 (1) (2024)
Hiroshi Takagi, Shogo Ito, Jae Sung Shim, Akane Kubota, Andrew K Hempton, Nayoung Lee, Takamasa Suzuki, Chansie Yang, Christine T Nolan, Kerry L Bubb, Cristina M Alexandre, Daisuke Kurihara, Yoshikatsu Sato, Yasuomi Tada, Takatoshi Kiba, Jose L Pruneda-Paz, Christine Queitsch, Josh T Cuperus, Takato Imaizumi
A florigen-expressing subpopulation of companion cells expresses other small proteins and reveals a nitrogen-sensitive FT repressor. bioRxiv : the preprint server for biology (2024)
Tobias Jores, Jackson Tonnies, Nicholas A Mueth, Andrew Romanowski, Stanley Fields, Josh T Cuperus, Christine Queitsch
Plant enhancers exhibit both cooperative and additive interactions among their functional elements. The Plant cell 36 (7) (2024)
Kerry L Bubb, Morgan O Hamm, Joseph K Min, Bryan Ramirez-Corona, Nicholas A Mueth, Jane Ranchalis, Mitchell R Vollger, Cole Trapnell, Josh T Cuperus, Christine Queitsch, Andrew Ben Stergachis
The regulatory potential of transposable elements in maize. bioRxiv : the preprint server for biology (2024)
Hiroshi Takagi, Nayoung Lee, Andrew K Hempton, Savita Purusuwashi, Michitaka Notaguchi, Kota Yamauchi, Kazumasa Shirai, Yaichi Kawakatsu, Susumu Uehara, William G Albers, Benjamin L R Downing, Shogo Ito, Takamasa Suzuki, Takakazu Matsuura, Izumi C Mori, Nobutaka Mitsuda, Daisuke Kurihara, Tomonao Matsushita, Young Hun Song, Yoshikatsu Sato, Mika Nomoto, Yasuomi Tada, Kousuke Hanada, Josh T Cuperus, Christine Queitsch, Takato Imaizumi
Florigen-producing cells express FPF1-LIKE PROTEIN 1 that accelerates flowering and stem growth in long days with sunlight red/far-red ratio in Arabidopsis . bioRxiv : the preprint server for biology (2024)
Kerry L Bubb, Morgan O Hamm, Joseph K Min, Bryan Ramirez-Corona, Nicholas A Mueth, Jane Ranchalis, Mitchell R Vollger, Cole Trapnell, Josh T Cuperus, Christine Queitsch, Andrew Ben Stergachis
The regulatory potential of transposable elements in maize. bioRxiv : the preprint server for biology (2024)
Tobias Jores, Jackson Tonnies, Nicholas A Mueth, Andrew Romanowski, Stanley Fields, Josh T Cuperus, Christine Queitsch
Plant enhancers exhibit both cooperative and additive interactions among their functional elements. The Plant cell 36 (7) (2024)
Tobias Jores, Jackson Tonnies, Nicholas A Mueth, Andrew Romanowski, Stanley Fields, Josh T Cuperus, Christine Queitsch
Plant enhancers exhibit both cooperative and additive interactions among their functional elements. The Plant cell (2024)
Jason Z Zhang, Nathan Greenwood, Jason Hernandez, Josh T Cuperus, Buwei Huang, Bryan D Ryder, Christine Queitsch, Jason E Gestwicki, Julien S Baker
De novo designed Hsp70 activator dissolves intracellular condensates. bioRxiv : the preprint server for biology (2023)
Molly Perchlik, Alexander Sasse, Sara Mostafavi, Stanley Fields, Josh T Cuperus
Impact on splicing in Saccharomyces cerevisiae of random 50-base sequences inserted into an intron. RNA (New York, N.Y.) (2023)
Cristina M Alexandre, Kerry L Bubb, Karla M Schultz, Janne Lempe, Josh T Cuperus, Christine Queitsch
Decreasing LTP2 expression increases phenotypic variation in early seedling traits of Arabidopsis thaliana . bioRxiv : the preprint server for biology (2023)
Cristina M Alexandre, Kerry L Bubb, Karla M Schultz, Janne Lempe, Josh T Cuperus, Christine Queitsch
LTP2 hypomorphs show genotype-by-environment interaction in early seedling traits in Arabidopsis thaliana. The New phytologist (2023)
Hardik P Gala, Amy Lanctot, Ken Jean-Baptiste, Sarah Guiziou, Jonah C Chu, Joseph E Zemke, Wesley George, Christine Queitsch, Josh T Cuperus, Jennifer L Nemhauser
A single-cell view of the transcriptome during lateral root initiation in Arabidopsis thaliana. The Plant cell 33 (7) (2021)
Tobias Jores, Jackson Tonnies, Travis Wrightsman, Edward S Buckler, Josh T Cuperus, Stanley Fields, Christine Queitsch
Synthetic promoter designs enabled by a comprehensive analysis of plant core promoters. Nature plants 7 (6) (2021)
Michael W Dorrity, Cristina M Alexandre, Morgan O Hamm, Anna-Lena Vigil, Stanley Fields, Christine Queitsch, Josh T Cuperus
The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution. Nature communications 12 (1) (2021)
Tobias Jores, Jackson Tonnies, Michael W Dorrity, Josh T Cuperus, Stanley Fields, Christine Queitsch
Identification of Plant Enhancers and Their Constituent Elements by STARR-seq in Tobacco Leaves. The Plant cell 32 (7) (2020)
Ken Jean-Baptiste, José L McFaline-Figueroa, Cristina M Alexandre, Michael W Dorrity, Lauren M Saunders, Kerry L Bubb, Cole Trapnell, Stanley Fields, Christine Queitsch, Josh T Cuperus
Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana. The Plant cell 31 (5) (2019)
Josh T Cuperus, Benjamin Groves, Anna Kuchina, Alexander B Rosenberg, Nebojsa Jojic, Stanley Fields, Georg Seelig
Deep learning of the regulatory grammar of yeast 5' untranslated regions from 500,000 random sequences. Genome research 27 (12) (2017)