Andrew A Chen (Andrew Chen)

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 25

Top Topics

Functional Connectivity

Borderline Personality Disorder

Machine Learning

Top Venues

Nature communications

bioRxiv : the preprint server for biology

PLoS computational biology

IEEE open journal of engineering in medicine and biology

This page only lists publications with an associated author ORCID identifier.

Publications

Andrew A Chen, Kelly Clark, Blake E Dewey, Anna DuVal, Nicole Pellegrini, Govind Nair, Youmna Jalkh, Samar Khalil, Jon Zurawski, Peter A Calabresi, Daniel S Reich, Rohit Bakshi, Haochang Shou, Russell T Shinohara, null null
PARE: A framework for removal of confounding effects from any distance-based dimension reduction method. PLoS computational biology 20 (7) (2024)
Andrew A Chen, Kelly Clark, Blake E Dewey, Anna DuVal, Nicole Pellegrini, Govind Nair, Youmna Jalkh, Samar Khalil, Jon Zurawski, Peter A Calabresi, Daniel S Reich, Rohit Bakshi, Haochang Shou, Russell T Shinohara, null null
PARE: A framework for removal of confounding effects from any distance-based dimension reduction method. PLoS computational biology 20 (7) (2024)
Andrew A Chen, Kelly Clark, Blake E Dewey, Anna DuVal, Nicole Pellegrini, Govind Nair, Youmna Jalkh, Samar Khalil, Jon Zurawski, Peter A Calabresi, Daniel S Reich, Rohit Bakshi, Haochang Shou, Russell T Shinohara, null null
PARE: A framework for removal of confounding effects from any distance-based dimension reduction method. PLoS computational biology 20 (7) (2024)
Andrew A Chen, Kelly Clark, Blake E Dewey, Anna DuVal, Nicole Pellegrini, Govind Nair, Youmna Jalkh, Samar Khalil, Jon Zurawski, Peter A Calabresi, Daniel S Reich, Rohit Bakshi, Haochang Shou, Russell T Shinohara, null null
PARE: A framework for removal of confounding effects from any distance-based dimension reduction method. PLoS computational biology 20 (7) (2024)
Jose L Agraz, Caleb M Grenko, Andrew A Chen, Angela N Viaene, MacLean D Nasrallah, Sarthak Pati, Tahsin Kurc, Joseph Saltz, Michael D Feldman, Hamed Akbari, Parth Sharma, Russell Taki Shinohara, Spyridon Bakas
Robust Image Population Based Stain Color Normalization: How Many Reference Slides Are Enough? IEEE open journal of engineering in medicine and biology 3 (2023)
Arielle S Keller, Adam R Pines, Sheila Shanmugan, Valerie Jill Sydnor, Zaixu Cui, Maxwell A Bertolero, Ran Barzilay, Aaron F Alexander-Bloch, Nora Byington, Andrew A Chen, Gregory M Conan, Christos Davatzikos, Eric Feczko, Timothy J Hendrickson, Audrey Houghton, Bart Larsen, Hongming Li, Oscar Miranda Dominguez, David R Roalf, Anders Perrone, Alisha Shetty, Russell T Shinohara, Yong Fan, Damien A Fair, Theodore Daniel Satterthwaite
Personalized functional brain network topography is associated with individual differences in youth cognition. Nature communications 14 (1) (2023)
Arielle S Keller, Adam R Pines, Sheila Shanmugan, Valerie Jill Sydnor, Zaixu Cui, Maxwell A Bertolero, Ran Barzilay, Aaron F Alexander-Bloch, Nora Byington, Andrew A Chen, Gregory M Conan, Christos Davatzikos, Eric Feczko, Timothy J Hendrickson, Audrey Houghton, Bart Larsen, Hongming Li, Oscar Miranda Dominguez, David R Roalf, Anders Perrone, Alisha Shetty, Russell T Shinohara, Yong Fan, Damien A Fair, Theodore Daniel Satterthwaite
Personalized functional brain network topography is associated with individual differences in youth cognition. Nature communications 14 (1) (2023)
Fengling Hu, Alfredo Lucas, Andrew A Chen, Kyle Coleman, Hannah Horng, Raymond W S Ng, Nicholas James Tustison, Kathryn Adamiak Davis, Haochang Shou, Mingyao Li, Russell Taki Shinohara, null null
DeepComBat: A Statistically Motivated, Hyperparameter-Robust, Deep Learning Approach to Harmonization of Neuroimaging Data. bioRxiv : the preprint server for biology (2023)
Jose L Agraz, Caleb M Grenko, Andrew A Chen, Angela N Viaene, MacLean D Nasrallah, Sarthak Pati, Tahsin Kurc, Joseph Saltz, Michael D Feldman, Hamed Akbari, Parth Sharma, Russell Taki Shinohara, Spyridon Bakas
Robust Image Population Based Stain Color Normalization: How Many Reference Slides Are Enough? IEEE open journal of engineering in medicine and biology 3 (2023)
Andrew A Chen, Kelly Clark, Blake E Dewey, Anna DuVal, Nicole Pellegrini, Govind Nair, Youmna Jalkh, Samar Khalil, Jon Zurawski, Peter Calabresi, Daniel S Reich, Rohit Bakshi, Haochang Shou, Russell T Shinohara, null null, null null
Deconfounded Dimension Reduction via Partial Embeddings. bioRxiv : the preprint server for biology (2023)
Arielle S Keller, Adam R Pines, Sheila Shanmugan, Valerie Jill Sydnor, Zaixu Cui, Maxwell A Bertolero, Ran Barzilay, Aaron F Alexander-Bloch, Nora Byington, Andrew A Chen, Gregory M Conan, Christos Davatzikos, Eric Feczko, Timothy J Hendrickson, Audrey Houghton, Bart Larsen, Hongming Li, Oscar Miranda Dominguez, David R Roalf, Anders Perrone, Alisha Shetty, Russell T Shinohara, Yong Fan, Damien A Fair, Theodore Daniel Satterthwaite
Personalized functional brain network topography is associated with individual differences in youth cognition. Nature communications 14 (1) (2023)
Arielle S Keller, Adam R Pines, Sheila Shanmugan, Valerie Jill Sydnor, Zaixu Cui, Maxwell A Bertolero, Ran Barzilay, Aaron F Alexander-Bloch, Nora Byington, Andrew A Chen, Gregory M Conan, Christos Davatzikos, Eric Feczko, Timothy J Hendrickson, Audrey Houghton, Bart Larsen, Hongming Li, Oscar Miranda Dominguez, David R Roalf, Anders Perrone, Alisha Shetty, Russell T Shinohara, Yong Fan, Damien A Fair, Theodore Daniel Satterthwaite
Personalized functional brain network topography is associated with individual differences in youth cognition. Nature communications 14 (1) (2023)
Arielle S Keller, Adam R Pines, Sheila Shanmugan, Valerie Jill Sydnor, Zaixu Cui, Maxwell A Bertolero, Ran Barzilay, Aaron F Alexander-Bloch, Nora Byington, Andrew A Chen, Gregory M Conan, Christos Davatzikos, Eric Feczko, Timothy J Hendrickson, Audrey Houghton, Bart Larsen, Hongming Li, Oscar Miranda Dominguez, David R Roalf, Anders Perrone, Alisha Shetty, Russell T Shinohara, Yong Fan, Damien A Fair, Theodore Daniel Satterthwaite
Personalized functional brain network topography is associated with individual differences in youth cognition. Nature communications 14 (1) (2023)
Andrew A Chen, Sarah M Weinstein, Azeez Adebimpe, Ruben C Gur, Raquel E Gur, Kathleen R Merikangas, Theodore D Satterthwaite, Russell T Shinohara, Haochang Shou
Similarity-based multimodal regression. Biostatistics (Oxford, England) (2023)
Arielle S Keller, Adam R Pines, Sheila Shanmugan, Valerie Jill Sydnor, Zaixu Cui, Maxwell A Bertolero, Ran Barzilay, Aaron F Alexander-Bloch, Nora Byington, Andrew A Chen, Gregory M Conan, Christos Davatzikos, Eric Feczko, Timothy J Hendrickson, Audrey Houghton, Bart Larsen, Hongming Li, Oscar Miranda Dominguez, David R Roalf, Anders Perrone, Alisha Shetty, Russell T Shinohara, Yong Fan, Damien A Fair, Theodore Daniel Satterthwaite
Personalized functional brain network topography is associated with individual differences in youth cognition. Nature communications 14 (1) (2023)
Jose L Agraz, Caleb M Grenko, Andrew A Chen, Angela N Viaene, MacLean D Nasrallah, Sarthak Pati, Tahsin Kurc, Joseph Saltz, Michael D Feldman, Hamed Akbari, Parth Sharma, Russell Taki Shinohara, Spyridon Bakas
Robust Image Population Based Stain Color Normalization: How Many Reference Slides Are Enough? IEEE open journal of engineering in medicine and biology 3 (2023)
Fengling Hu, Alfredo Lucas, Andrew A Chen, Kyle Coleman, Hannah Horng, Raymond W S Ng, Nicholas James Tustison, Kathryn Adamiak Davis, Haochang Shou, Mingyao Li, Russell Taki Shinohara, null null
DeepComBat: A Statistically Motivated, Hyperparameter-Robust, Deep Learning Approach to Harmonization of Neuroimaging Data. bioRxiv : the preprint server for biology (2023)
Arielle S Keller, Adam R Pines, Sheila Shanmugan, Valerie Jill Sydnor, Zaixu Cui, Maxwell A Bertolero, Ran Barzilay, Aaron F Alexander-Bloch, Nora Byington, Andrew A Chen, Gregory M Conan, Christos Davatzikos, Eric Feczko, Timothy J Hendrickson, Audrey Houghton, Bart Larsen, Hongming Li, Oscar Miranda Dominguez, David R Roalf, Anders Perrone, Alisha Shetty, Russell T Shinohara, Yong Fan, Damien A Fair, Theodore Daniel Satterthwaite
Personalized functional brain network topography is associated with individual differences in youth cognition. Nature communications 14 (1) (2023)
Andrew A Chen, Kelly Clark, Blake E Dewey, Anna DuVal, Nicole Pellegrini, Govind Nair, Youmna Jalkh, Samar Khalil, Jon Zurawski, Peter Calabresi, Daniel S Reich, Rohit Bakshi, Haochang Shou, Russell T Shinohara, null null, null null
Deconfounded Dimension Reduction via Partial Embeddings. bioRxiv : the preprint server for biology (2023)
Arielle S Keller, Adam R Pines, Sheila Shanmugan, Valerie Jill Sydnor, Zaixu Cui, Maxwell A Bertolero, Ran Barzilay, Aaron F Alexander-Bloch, Nora Byington, Andrew A Chen, Gregory M Conan, Christos Davatzikos, Eric Feczko, Timothy J Hendrickson, Audrey Houghton, Bart Larsen, Hongming Li, Oscar Miranda Dominguez, David R Roalf, Anders Perrone, Alisha Shetty, Russell T Shinohara, Yong Fan, Damien A Fair, Theodore Daniel Satterthwaite
Personalized functional brain network topography is associated with individual differences in youth cognition. Nature communications 14 (1) (2023)
Fengling Hu, Alfredo Lucas, Andrew A Chen, Kyle Coleman, Hannah Horng, Raymond W S Ng, Nicholas James Tustison, Kathryn Adamiak Davis, Haochang Shou, Mingyao Li, Russell Taki Shinohara, null null
DeepComBat: A Statistically Motivated, Hyperparameter-Robust, Deep Learning Approach to Harmonization of Neuroimaging Data. bioRxiv : the preprint server for biology (2023)
Golia Shafiei, Arielle S Keller, Maxwell A Bertolero, Sheila Shanmugan, Danielle S Bassett, Andrew A Chen, Sydney Covitz, Audrey Houghton, Audrey C Luo, Kahini Mehta, Taylor Salo, Russell Taki Shinohara, Damien Fair, Michael N Hallquist, Theodore Daniel Satterthwaite
Generalizable links between symptoms of borderline personality disorder and functional connectivity. bioRxiv : the preprint server for biology (2023)
Arielle S Keller, Adam R Pines, Sheila Shanmugan, Valerie Jill Sydnor, Zaixu Cui, Maxwell A Bertolero, Ran Barzilay, Aaron F Alexander-Bloch, Nora Byington, Andrew A Chen, Gregory M Conan, Christos Davatzikos, Eric Feczko, Timothy J Hendrickson, Audrey Houghton, Bart Larsen, Hongming Li, Oscar Miranda Dominguez, David R Roalf, Anders Perrone, Alisha Shetty, Russell T Shinohara, Yong Fan, Damien A Fair, Theodore Daniel Satterthwaite
Personalized functional brain network topography is associated with individual differences in youth cognition. Nature communications 14 (1) (2023)
Ellyn R Butler, Andrew A Chen, Rabie Ramadan, Trang T Le, Kosha Ruparel, Tyler Maxwell Moore, Theodore Daniel Satterthwaite, Fengqing Zhang, Haochang Shou, Ruben E Gur, Thomas E Nichols, Russell Taki Shinohara
Pitfalls in brain age analyses. Human brain mapping 42 (13) (2021)
Andrew A Chen, Joanne C Beer, Nicholas James Tustison, Philip A Cook, Russell T Shinohara, Haochang Shou, null null
Mitigating site effects in covariance for machine learning in neuroimaging data. Human brain mapping 43 (4) (2021)