Spyridon Bakas (S Bakas)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 99

Top Venues

Nature methods

Scientific data

Insights into imaging

Cancer research

University of Pennsylvania Perelman School of Medicine

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Pennsylvania Perelman School of Medicine

United States

Instructor :: Joint appt: Dept of Radiology; Dept of Pathology & Laboratory Medicine

University of Pennsylvania, Perelman School of Medicine Dec 15 2014

United States

Postdoctoral Researcher :: Center for Biomedical Image Computing and Analytics

Publications

Annika Reinke, Minu D Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A Emre Kavur, Tim Rädsch, Carole H Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Florian Buettner, M Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A Cimini, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Jens Kleesiek, Florian Kofler, Thijs Kooi, Dominik T Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M Rafelski, Nasir M Rajpoot, Mauricio Reyes, Michael A Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Ronald M Summers, Abdel A Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Ziv Rafael Yaniv, Paul F Jaeger, Lena Maier-Hein
Understanding metric-related pitfalls in image analysis validation. Nature methods 21 (2) (2024)
Tathiane Maistro Malta, Thais S Sabedot, Natalia S Morosini, Indrani Datta, Luciano Garofano, Wies R Vallentgoed, Frederick S Varn, Kenneth D Aldape, Fulvio D'Angelo, Spyridon Bakas, Jill S Barnholtz-Sloan, Hui Kong Gan, Mohammad Hasanain, Ann-Christin Hau, Kevin C Johnson, Simona Cazacu, Ana C deCarvalho, Mustafa Khasraw, Emre Kocakavuk, Mathilde C M Kouwenhoven, Simona Migliozzi, Simone P Niclou, Johanna M Niers, David Ryan Ormond, Sun Ha Paek, Guido Reifenberger, Peter A E Sillevis Smitt, Marion Smits, Lucy F Stead, Martin J Van Den Bent, Erwin G Van Meir, Annemiek M E Walenkamp, Tobias Weiss, Michael Weller, Bart A Westerman, Bauke Ylstra, Pieter Wesseling, Anna Lasorella, Pim J French, Laila M Poisson, null null, Roel G W Verhaak, Antonio Iavarone, Houtan Noushmehr
The Epigenetic Evolution of Glioma Is Determined by the IDH1 Mutation Status and Treatment Regimen. Cancer research 84 (5) (2024)
Annika Reinke, Minu D Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A Emre Kavur, Tim Rädsch, Carole H Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Florian Buettner, M Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A Cimini, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Jens Kleesiek, Florian Kofler, Thijs Kooi, Dominik T Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M Rafelski, Nasir M Rajpoot, Mauricio Reyes, Michael A Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Ronald M Summers, Abdel A Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Ziv Rafael Yaniv, Paul F Jaeger, Lena Maier-Hein
Understanding metric-related pitfalls in image analysis validation. Nature methods 21 (2) (2024)
Burak Koçak, Tugba Akinci D'Antonoli, Nathaniel D Mercaldo, Ángel Alberich-Bayarri, Bettina Baeßler, Ilaria Ambrosini, Anna E Andreychenko, Spyridon Bakas, Regina G H Beets-Tan, Keno Kyrill Bressem, Irène Buvat, Roberto Cannella, Luca Alessandro Cappellini, Armando Ugo Cavallo, Leonid L Chepelev, Linda Chi Hang Chu, Aydin Demircioğlu, Nandita M deSouza, Matthias Dietzel, Salvatore Claudio Fanni, Andriy Y Fedorov, Laure S Fournier, Valentina Giannini, Rossano Girometti, Kevin B W Groot Lipman, Georgios Kalarakis, Brendan S Kelly, Michail E Klontzas, Dow-Mu Koh, Elmar Kotter, Ho Yun Lee, Mario Maas, Luis Martí-Bonmatí, Henning Muller, Nancy A Obuchowski, Fanny Orlhac, Nickolas Papanikolaou, Ekaterina Petrash, Elisabeth A G Pfaehler, Daniel Pinto Dos Santos, Andrea Ponsiglione, Sebastia' Sabater, Francesco Sardanelli, Philipp Seeböck, Nanna M Sijtsema, Arnaldo Stanzione, Alberto Traverso, Lorenzo Ugga, Martin Vallières, Lisanne V van Dijk, Joost J M van Griethuysen, Robbert Willem van Hamersvelt, Peter M A van Ooijen, Federica Vernuccio, Alan Wang, Stuart Williams, Jan Witowski, Zhongyi Zhang, Alexander Zwanenburg, Renato Cuocolo
METhodological RadiomICs Score (METRICS): a quality scoring tool for radiomics research endorsed by EuSoMII. Insights into imaging 15 (1) (2024)
Tathiane Maistro Malta, Thais S Sabedot, Natalia S Morosini, Indrani Datta, Luciano Garofano, Wies R Vallentgoed, Frederick S Varn, Kenneth D Aldape, Fulvio D'Angelo, Spyridon Bakas, Jill S Barnholtz-Sloan, Hui Kong Gan, Mohammad Hasanain, Ann-Christin Hau, Kevin C Johnson, Simona Cazacu, Ana C deCarvalho, Mustafa Khasraw, Emre Kocakavuk, Mathilde C M Kouwenhoven, Simona Migliozzi, Simone P Niclou, Johanna M Niers, David Ryan Ormond, Sun Ha Paek, Guido Reifenberger, Peter A E Sillevis Smitt, Marion Smits, Lucy F Stead, Martin J Van Den Bent, Erwin G Van Meir, Annemiek M E Walenkamp, Tobias Weiss, Michael Weller, Bart A Westerman, Bauke Ylstra, Pieter Wesseling, Anna Lasorella, Pim J French, Laila M Poisson, null null, Roel G W Verhaak, Antonio Iavarone, Houtan Noushmehr
The Epigenetic Evolution of Glioma Is Determined by the IDH1 Mutation Status and Treatment Regimen. Cancer research 84 (5) (2024)
Annika Reinke, Minu D Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A Emre Kavur, Tim Rädsch, Carole H Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Florian Buettner, M Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A Cimini, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Jens Kleesiek, Florian Kofler, Thijs Kooi, Dominik T Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M Rafelski, Nasir M Rajpoot, Mauricio Reyes, Michael A Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Ronald M Summers, Abdel A Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Ziv Rafael Yaniv, Paul F Jaeger, Lena Maier-Hein
Understanding metric-related pitfalls in image analysis validation. Nature methods 21 (2) (2024)
Marius George Linguraru, Spyridon Bakas, Mariam S Aboian, Peter D Chang, Adam E Flanders, Jayashree Kalpathy-Cramer, Felipe Campos Kitamura, Matthew P Lungren, John T Mongan, Luciano M Prevedello, Ronald M Summers, Carol Chia Chia Wu, Maruf Adewole, Charles E Kahn
Clinical, Cultural, Computational, and Regulatory Considerations to Deploy AI in Radiology: Perspectives of RSNA and MICCAI Experts. Radiology. Artificial intelligence 6 (4) (2024)
Annika Reinke, Minu D Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A Emre Kavur, Tim Rädsch, Carole H Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Florian Buettner, M Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A Cimini, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Jens Kleesiek, Florian Kofler, Thijs Kooi, Dominik T Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M Rafelski, Nasir M Rajpoot, Mauricio Reyes, Michael A Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Ronald M Summers, Abdel A Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Ziv Rafael Yaniv, Paul F Jaeger, Lena Maier-Hein
Understanding metric-related pitfalls in image analysis validation. Nature methods 21 (2) (2024)
Marius George Linguraru, Spyridon Bakas, Mariam S Aboian, Peter D Chang, Adam E Flanders, Jayashree Kalpathy-Cramer, Felipe Campos Kitamura, Matthew P Lungren, John T Mongan, Luciano M Prevedello, Ronald M Summers, Carol Chia Chia Wu, Maruf Adewole, Charles E Kahn
Clinical, Cultural, Computational, and Regulatory Considerations to Deploy AI in Radiology: Perspectives of RSNA and MICCAI Experts. Radiology. Artificial intelligence 6 (4) (2024)
Burak Koçak, Tugba Akinci D'Antonoli, Nathaniel D Mercaldo, Ángel Alberich-Bayarri, Bettina Baeßler, Ilaria Ambrosini, Anna E Andreychenko, Spyridon Bakas, Regina G H Beets-Tan, Keno Kyrill Bressem, Irène Buvat, Roberto Cannella, Luca Alessandro Cappellini, Armando Ugo Cavallo, Leonid L Chepelev, Linda Chi Hang Chu, Aydin Demircioğlu, Nandita M deSouza, Matthias Dietzel, Salvatore Claudio Fanni, Andriy Y Fedorov, Laure S Fournier, Valentina Giannini, Rossano Girometti, Kevin B W Groot Lipman, Georgios Kalarakis, Brendan S Kelly, Michail E Klontzas, Dow-Mu Koh, Elmar Kotter, Ho Yun Lee, Mario Maas, Luis Martí-Bonmatí, Henning Muller, Nancy A Obuchowski, Fanny Orlhac, Nickolas Papanikolaou, Ekaterina Petrash, Elisabeth A G Pfaehler, Daniel Pinto Dos Santos, Andrea Ponsiglione, Sebastia' Sabater, Francesco Sardanelli, Philipp Seeböck, Nanna M Sijtsema, Arnaldo Stanzione, Alberto Traverso, Lorenzo Ugga, Martin Vallières, Lisanne V van Dijk, Joost J M van Griethuysen, Robbert Willem van Hamersvelt, Peter M A van Ooijen, Federica Vernuccio, Alan Wang, Stuart Williams, Jan Witowski, Zhongyi Zhang, Alexander Zwanenburg, Renato Cuocolo
METhodological RadiomICs Score (METRICS): a quality scoring tool for radiomics research endorsed by EuSoMII. Insights into imaging 15 (1) (2024)
Annika Reinke, Minu D Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A Emre Kavur, Tim Rädsch, Carole H Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Florian Buettner, M Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A Cimini, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Jens Kleesiek, Florian Kofler, Thijs Kooi, Dominik T Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M Rafelski, Nasir M Rajpoot, Mauricio Reyes, Michael A Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Ronald M Summers, Abdel A Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Ziv Rafael Yaniv, Paul F Jaeger, Lena Maier-Hein
Understanding metric-related pitfalls in image analysis validation. Nature methods 21 (2) (2024)
Annika Reinke, Minu D Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A Emre Kavur, Tim Rädsch, Carole H Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Florian Buettner, M Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A Cimini, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Jens Kleesiek, Florian Kofler, Thijs Kooi, Dominik T Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M Rafelski, Nasir M Rajpoot, Mauricio Reyes, Michael A Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Ronald M Summers, Abdel A Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Ziv Rafael Yaniv, Paul F Jaeger, Lena Maier-Hein
Understanding metric-related pitfalls in image analysis validation. Nature methods 21 (2) (2024)
Divya Ramakrishnan, Leon Jekel, Saahil Chadha, Anastasia Janas, Harrison Moy, Nazanin Maleki, Matthew Sala, Manpreet Kaur, Gabriel Cassinelli Petersen, Sara Merkaj, Marc von Reppert, Ujjwal Baid, Spyridon Bakas, Claudia Kirsch, Melissa Davis, Khaled Bousabarah, Wolfgang Holler, MingDe Lin, Malte Westerhoff, Sanjay Aneja, Fatima Memon, Mariam S Aboian
A large open access dataset of brain metastasis 3D segmentations on MRI with clinical and imaging information. Scientific data 11 (1) (2024)
Tathiane Maistro Malta, Thais S Sabedot, Natalia S Morosini, Indrani Datta, Luciano Garofano, Wies R Vallentgoed, Frederick S Varn, Kenneth D Aldape, Fulvio D'Angelo, Spyridon Bakas, Jill S Barnholtz-Sloan, Hui Kong Gan, Mohammad Hasanain, Ann-Christin Hau, Kevin C Johnson, Simona Cazacu, Ana C deCarvalho, Mustafa Khasraw, Emre Kocakavuk, Mathilde C M Kouwenhoven, Simona Migliozzi, Simone P Niclou, Johanna M Niers, David Ryan Ormond, Sun Ha Paek, Guido Reifenberger, Peter A E Sillevis Smitt, Marion Smits, Lucy F Stead, Martin J Van Den Bent, Erwin G Van Meir, Annemiek M E Walenkamp, Tobias Weiss, Michael Weller, Bart A Westerman, Bauke Ylstra, Pieter Wesseling, Anna Lasorella, Pim J French, Laila M Poisson, null null, Roel G W Verhaak, Antonio Iavarone, Houtan Noushmehr
The Epigenetic Evolution of Glioma Is Determined by the IDH1 Mutation Status and Treatment Regimen. Cancer research 84 (5) (2024)
Dominic LaBella, Omaditya Khanna, Shan McBurney-Lin, Ryan Mclean, Pierre Nedelec, Arif S Rashid, Nourel Hoda Tahon, Talissa Altes, Ujjwal Baid, Radhika Bhalerao, Yaseen Dhemesh, Scott Floyd, Devon Godfrey, Fathi Hilal, Anastasia Janas, Anahita Kazerooni, Collin Kent, John Kirkpatrick, Florian Kofler, Kevin Leu, Nazanin Maleki, Bjoern Menze, Maxence Pajot, Zachary J Reitman, Jeffrey D Rudie, Rachit Saluja, Yury Velichko, Chunhao Wang, Pranav I Warman, Nico Sollmann, David Diffley, Khanak K Nandolia, Daniel I Warren, Ali Hussain, John Pascal Fehringer, Yulia Bronstein, Lisa Deptula, Evan G Stein, Mahsa Taherzadeh, Eduardo Portela de Oliveira, Aoife Haughey, Marinos Kontzialis, Luca Saba, Benjamin Turner, Melanie M T Brüßeler, Shehbaz Ansari, Athanasios Gkampenis, David Maximilian Weiss, Aya Mansour, Islam H Shawali, Nikolay Yordanov, Joel M Stein, Roula Hourani, Mohammed Yahya Moshebah, Ahmed Magdy Abouelatta, Tanvir Rizvi, Klara Willms, Dann C Martin, Abdullah Okar, Gennaro D'Anna, Ahmed Taha, Yasaman Sharifi, Shahriar Faghani, Dominic Kite, Marco Pinho, Muhammad Ammar Haider, Michelle Alonso-Basanta, Javier Villanueva-Meyer, Andreas M Rauschecker, Ayman Nada, Mariam Aboian, Adam Flanders, Spyridon Bakas, Evan Calabrese
A multi-institutional meningioma MRI dataset for automated multi-sequence image segmentation. Scientific data 11 (1) (2024)
Dominic LaBella, Omaditya Khanna, Shan McBurney-Lin, Ryan Mclean, Pierre Nedelec, Arif S Rashid, Nourel Hoda Tahon, Talissa Altes, Ujjwal Baid, Radhika Bhalerao, Yaseen Dhemesh, Scott Floyd, Devon Godfrey, Fathi Hilal, Anastasia Janas, Anahita Kazerooni, Collin Kent, John Kirkpatrick, Florian Kofler, Kevin Leu, Nazanin Maleki, Bjoern Menze, Maxence Pajot, Zachary J Reitman, Jeffrey D Rudie, Rachit Saluja, Yury Velichko, Chunhao Wang, Pranav I Warman, Nico Sollmann, David Diffley, Khanak K Nandolia, Daniel I Warren, Ali Hussain, John Pascal Fehringer, Yulia Bronstein, Lisa Deptula, Evan G Stein, Mahsa Taherzadeh, Eduardo Portela de Oliveira, Aoife Haughey, Marinos Kontzialis, Luca Saba, Benjamin Turner, Melanie M T Brüßeler, Shehbaz Ansari, Athanasios Gkampenis, David Maximilian Weiss, Aya Mansour, Islam H Shawali, Nikolay Yordanov, Joel M Stein, Roula Hourani, Mohammed Yahya Moshebah, Ahmed Magdy Abouelatta, Tanvir Rizvi, Klara Willms, Dann C Martin, Abdullah Okar, Gennaro D'Anna, Ahmed Taha, Yasaman Sharifi, Shahriar Faghani, Dominic Kite, Marco Pinho, Muhammad Ammar Haider, Michelle Alonso-Basanta, Javier Villanueva-Meyer, Andreas M Rauschecker, Ayman Nada, Mariam Aboian, Adam Flanders, Spyridon Bakas, Evan Calabrese
A multi-institutional meningioma MRI dataset for automated multi-sequence image segmentation. Scientific data 11 (1) (2024)
Tathiane Maistro Malta, Thais S Sabedot, Natalia S Morosini, Indrani Datta, Luciano Garofano, Wies R Vallentgoed, Frederick S Varn, Kenneth D Aldape, Fulvio D'Angelo, Spyridon Bakas, Jill S Barnholtz-Sloan, Hui Kong Gan, Mohammad Hasanain, Ann-Christin Hau, Kevin C Johnson, Simona Cazacu, Ana C deCarvalho, Mustafa Khasraw, Emre Kocakavuk, Mathilde C M Kouwenhoven, Simona Migliozzi, Simone P Niclou, Johanna M Niers, David Ryan Ormond, Sun Ha Paek, Guido Reifenberger, Peter A E Sillevis Smitt, Marion Smits, Lucy F Stead, Martin J Van Den Bent, Erwin G Van Meir, Annemiek M E Walenkamp, Tobias Weiss, Michael Weller, Bart A Westerman, Bauke Ylstra, Pieter Wesseling, Anna Lasorella, Pim J French, Laila M Poisson, null null, Roel G W Verhaak, Antonio Iavarone, Houtan Noushmehr
The Epigenetic Evolution of Glioma Is Determined by the IDH1 Mutation Status and Treatment Regimen. Cancer research 84 (5) (2024)
Annika Reinke, Minu D Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A Emre Kavur, Tim Rädsch, Carole H Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Florian Buettner, M Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A Cimini, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Jens Kleesiek, Florian Kofler, Thijs Kooi, Dominik T Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M Rafelski, Nasir M Rajpoot, Mauricio Reyes, Michael A Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Ronald M Summers, Abdel A Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Ziv Rafael Yaniv, Paul F Jaeger, Lena Maier-Hein
Understanding metric-related pitfalls in image analysis validation. Nature methods 21 (2) (2024)
Philip Whybra, Alexander Zwanenburg, Vincent Andrearczyk, Roger Schaer, Aditya P Apte, Alexandre Ayotte, Bhakti Baheti, Spyridon Bakas, Andrea Bettinelli, Ronald Boellaard, Luca Boldrini, Irène Buvat, Gary J R Cook, Florian Dietsche, Nicola Dinapoli, Hubert Szymon Gabryś, Vicky J Goh, Matthias Guckenberger, Mathieu Hatt, Mahdi Hosseinzadeh, Aditi Iyer, Jacopo Lenkowicz, Mahdi A L Loutfi, Steffen Loeck, Francesca Marturano, Olivier Morin, Christophe Nioche, Fanny Orlhac, Sarthak Pati, Arman Rahmim, Seyed Masoud Rezaeijo, Christopher G Rookyard, Mohammadreza Salmapour, Andreas Schindele, Isaac Shiri, Emiliano Spezi, Stephanie Tanadini-Lang, Florent Tixier, Taman Upadhaya, Vincenzo Valentini, Joost J M van Griethuysen, Fereshteh Yousefirizi, Habib Zaidi, Henning Muller, Martin Vallières, Adrien Depeursinge
The Image Biomarker Standardization Initiative: Standardized Convolutional Filters for Reproducible Radiomics and Enhanced Clinical Insights. Radiology 310 (2) (2024)
Philip Whybra, Alexander Zwanenburg, Vincent Andrearczyk, Roger Schaer, Aditya P Apte, Alexandre Ayotte, Bhakti Baheti, Spyridon Bakas, Andrea Bettinelli, Ronald Boellaard, Luca Boldrini, Irène Buvat, Gary J R Cook, Florian Dietsche, Nicola Dinapoli, Hubert Szymon Gabryś, Vicky J Goh, Matthias Guckenberger, Mathieu Hatt, Mahdi Hosseinzadeh, Aditi Iyer, Jacopo Lenkowicz, Mahdi A L Loutfi, Steffen Loeck, Francesca Marturano, Olivier Morin, Christophe Nioche, Fanny Orlhac, Sarthak Pati, Arman Rahmim, Seyed Masoud Rezaeijo, Christopher G Rookyard, Mohammadreza Salmapour, Andreas Schindele, Isaac Shiri, Emiliano Spezi, Stephanie Tanadini-Lang, Florent Tixier, Taman Upadhaya, Vincenzo Valentini, Joost J M van Griethuysen, Fereshteh Yousefirizi, Habib Zaidi, Henning Muller, Martin Vallières, Adrien Depeursinge
The Image Biomarker Standardization Initiative: Standardized Convolutional Filters for Reproducible Radiomics and Enhanced Clinical Insights. Radiology 310 (2) (2024)
Lena Maier-Hein, Annika Reinke, Patrick Godau, Minu D Tizabi, Florian Buettner, Evangelia Christodoulou, Ben Glocker, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A Riegler, Manuel Wiesenfarth, A Emre Kavur, Carole H Sudre, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, Tim Rädsch, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B Blaschko, M Jorge Cardoso, Veronika Cheplygina, Beth A Cimini, Gary Stephen Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Robert Haase, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Florian Kofler, Dominik T Schneider, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Peter Mattson, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Nasir M Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M Summers, Abdel Aziz Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Paul F Jaeger
Metrics reloaded: recommendations for image analysis validation. Nature methods 21 (2) (2024)
Philip Whybra, Alexander Zwanenburg, Vincent Andrearczyk, Roger Schaer, Aditya P Apte, Alexandre Ayotte, Bhakti Baheti, Spyridon Bakas, Andrea Bettinelli, Ronald Boellaard, Luca Boldrini, Irène Buvat, Gary J R Cook, Florian Dietsche, Nicola Dinapoli, Hubert Szymon Gabryś, Vicky J Goh, Matthias Guckenberger, Mathieu Hatt, Mahdi Hosseinzadeh, Aditi Iyer, Jacopo Lenkowicz, Mahdi A L Loutfi, Steffen Loeck, Francesca Marturano, Olivier Morin, Christophe Nioche, Fanny Orlhac, Sarthak Pati, Arman Rahmim, Seyed Masoud Rezaeijo, Christopher G Rookyard, Mohammadreza Salmapour, Andreas Schindele, Isaac Shiri, Emiliano Spezi, Stephanie Tanadini-Lang, Florent Tixier, Taman Upadhaya, Vincenzo Valentini, Joost J M van Griethuysen, Fereshteh Yousefirizi, Habib Zaidi, Henning Muller, Martin Vallières, Adrien Depeursinge
The Image Biomarker Standardization Initiative: Standardized Convolutional Filters for Reproducible Radiomics and Enhanced Clinical Insights. Radiology 310 (2) (2024)
Tathiane Maistro Malta, Thais S Sabedot, Natalia S Morosini, Indrani Datta, Luciano Garofano, Wies R Vallentgoed, Frederick S Varn, Kenneth D Aldape, Fulvio D'Angelo, Spyridon Bakas, Jill S Barnholtz-Sloan, Hui Kong Gan, Mohammad Hasanain, Ann-Christin Hau, Kevin C Johnson, Simona Cazacu, Ana C deCarvalho, Mustafa Khasraw, Emre Kocakavuk, Mathilde C M Kouwenhoven, Simona Migliozzi, Simone P Niclou, Johanna M Niers, David Ryan Ormond, Sun Ha Paek, Guido Reifenberger, Peter A E Sillevis Smitt, Marion Smits, Lucy F Stead, Martin J Van Den Bent, Erwin G Van Meir, Annemiek M E Walenkamp, Tobias Weiss, Michael Weller, Bart A Westerman, Bauke Ylstra, Pieter Wesseling, Anna Lasorella, Pim J French, Laila M Poisson, null null, Roel G W Verhaak, Antonio Iavarone, Houtan Noushmehr
The Epigenetic Evolution of Glioma Is Determined by the IDH1 Mutation Status and Treatment Regimen. Cancer research 84 (5) (2024)
Annika Reinke, Minu D Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A Emre Kavur, Tim Rädsch, Carole H Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Florian Buettner, M Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A Cimini, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Jens Kleesiek, Florian Kofler, Thijs Kooi, Dominik T Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M Rafelski, Nasir M Rajpoot, Mauricio Reyes, Michael A Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Ronald M Summers, Abdel A Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Ziv Rafael Yaniv, Paul F Jaeger, Lena Maier-Hein
Understanding metric-related pitfalls in image analysis validation. Nature methods (2024)
Lena Maier-Hein, Annika Reinke, Patrick Godau, Minu D Tizabi, Florian Buettner, Evangelia Christodoulou, Ben Glocker, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A Riegler, Manuel Wiesenfarth, A Emre Kavur, Carole H Sudre, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, Tim Rädsch, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B Blaschko, M Jorge Cardoso, Veronika Cheplygina, Beth A Cimini, Gary Stephen Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Robert Haase, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Florian Kofler, Dominik T Schneider, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Peter Mattson, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Nasir M Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M Summers, Abdel Aziz Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Paul F Jaeger
Metrics reloaded: recommendations for image analysis validation. Nature methods 21 (2) (2024)
Divya Ramakrishnan, Leon Jekel, Saahil Chadha, Anastasia Janas, Harrison Moy, Nazanin Maleki, Matthew Sala, Manpreet Kaur, Gabriel Cassinelli Petersen, Sara Merkaj, Marc von Reppert, Ujjwal Baid, Spyridon Bakas, Claudia Kirsch, Melissa Davis, Khaled Bousabarah, Wolfgang Holler, MingDe Lin, Malte Westerhoff, Sanjay Aneja, Fatima Memon, Mariam S Aboian
A large open access dataset of brain metastasis 3D segmentations on MRI with clinical and imaging information. Scientific data 11 (1) (2024)
Divya Ramakrishnan, Leon Jekel, Saahil Chadha, Anastasia Janas, Harrison Moy, Nazanin Maleki, Matthew Sala, Manpreet Kaur, Gabriel Cassinelli Petersen, Sara Merkaj, Marc von Reppert, Ujjwal Baid, Spyridon Bakas, Claudia Kirsch, Melissa Davis, Khaled Bousabarah, Wolfgang Holler, MingDe Lin, Malte Westerhoff, Sanjay Aneja, Fatima Memon, Mariam S Aboian
A large open access dataset of brain metastasis 3D segmentations on MRI with clinical and imaging information. Scientific data 11 (1) (2024)
Divya Ramakrishnan, Leon Jekel, Saahil Chadha, Anastasia Janas, Harrison Moy, Nazanin Maleki, Matthew Sala, Manpreet Kaur, Gabriel Cassinelli Petersen, Sara Merkaj, Marc von Reppert, Ujjwal Baid, Spyridon Bakas, Claudia Kirsch, Melissa Davis, Khaled Bousabarah, Wolfgang Holler, MingDe Lin, Malte Westerhoff, Sanjay Aneja, Fatima Memon, Mariam S Aboian
A large open access dataset of brain metastasis 3D segmentations on MRI with clinical and imaging information. Scientific data 11 (1) (2024)
Lena Maier-Hein, Annika Reinke, Patrick Godau, Minu D Tizabi, Florian Buettner, Evangelia Christodoulou, Ben Glocker, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A Riegler, Manuel Wiesenfarth, A Emre Kavur, Carole H Sudre, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, Tim Rädsch, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B Blaschko, M Jorge Cardoso, Veronika Cheplygina, Beth A Cimini, Gary Stephen Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Robert Haase, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Florian Kofler, Dominik T Schneider, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Peter Mattson, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Nasir M Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M Summers, Abdel Aziz Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Paul F Jaeger
Metrics reloaded: recommendations for image analysis validation. Nature methods (2024)
Lena Maier-Hein, Annika Reinke, Patrick Godau, Minu D Tizabi, Florian Buettner, Evangelia Christodoulou, Ben Glocker, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A Riegler, Manuel Wiesenfarth, A Emre Kavur, Carole H Sudre, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, Tim Rädsch, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B Blaschko, M Jorge Cardoso, Veronika Cheplygina, Beth A Cimini, Gary Stephen Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Robert Haase, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Florian Kofler, Dominik T Schneider, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Peter Mattson, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Nasir M Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M Summers, Abdel Aziz Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Paul F Jaeger
Metrics reloaded: recommendations for image analysis validation. Nature methods 21 (2) (2024)
Lena Maier-Hein, Annika Reinke, Patrick Godau, Minu D Tizabi, Florian Buettner, Evangelia Christodoulou, Ben Glocker, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A Riegler, Manuel Wiesenfarth, A Emre Kavur, Carole H Sudre, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, Tim Rädsch, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B Blaschko, M Jorge Cardoso, Veronika Cheplygina, Beth A Cimini, Gary Stephen Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Robert Haase, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Florian Kofler, Dominik T Schneider, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Peter Mattson, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Nasir M Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M Summers, Abdel Aziz Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Paul F Jaeger
Metrics reloaded: recommendations for image analysis validation. Nature methods 21 (2) (2024)
Philip Whybra, Alexander Zwanenburg, Vincent Andrearczyk, Roger Schaer, Aditya P Apte, Alexandre Ayotte, Bhakti Baheti, Spyridon Bakas, Andrea Bettinelli, Ronald Boellaard, Luca Boldrini, Irène Buvat, Gary J R Cook, Florian Dietsche, Nicola Dinapoli, Hubert Szymon Gabryś, Vicky J Goh, Matthias Guckenberger, Mathieu Hatt, Mahdi Hosseinzadeh, Aditi Iyer, Jacopo Lenkowicz, Mahdi A L Loutfi, Steffen Loeck, Francesca Marturano, Olivier Morin, Christophe Nioche, Fanny Orlhac, Sarthak Pati, Arman Rahmim, Seyed Masoud Rezaeijo, Christopher G Rookyard, Mohammadreza Salmapour, Andreas Schindele, Isaac Shiri, Emiliano Spezi, Stephanie Tanadini-Lang, Florent Tixier, Taman Upadhaya, Vincenzo Valentini, Joost J M van Griethuysen, Fereshteh Yousefirizi, Habib Zaidi, Henning Muller, Martin Vallières, Adrien Depeursinge
The Image Biomarker Standardization Initiative: Standardized Convolutional Filters for Reproducible Radiomics and Enhanced Clinical Insights. Radiology 310 (2) (2024)
Lena Maier-Hein, Annika Reinke, Patrick Godau, Minu D Tizabi, Florian Buettner, Evangelia Christodoulou, Ben Glocker, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A Riegler, Manuel Wiesenfarth, A Emre Kavur, Carole H Sudre, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, Tim Rädsch, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B Blaschko, M Jorge Cardoso, Veronika Cheplygina, Beth A Cimini, Gary Stephen Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Robert Haase, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Florian Kofler, Dominik T Schneider, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Peter Mattson, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Nasir M Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M Summers, Abdel Aziz Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Paul F Jaeger
Metrics reloaded: recommendations for image analysis validation. Nature methods 21 (2) (2024)
Annika Reinke, Minu D Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A Emre Kavur, Tim Rädsch, Carole H Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Florian Buettner, M Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A Cimini, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Jens Kleesiek, Florian Kofler, Thijs Kooi, Dominik T Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M Rafelski, Nasir M Rajpoot, Mauricio Reyes, Michael A Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Ronald M Summers, Abdel A Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Ziv Rafael Yaniv, Paul F Jaeger, Lena Maier-Hein
Understanding metric-related pitfalls in image analysis validation. Nature methods 21 (2) (2024)
Lena Maier-Hein, Annika Reinke, Patrick Godau, Minu D Tizabi, Florian Buettner, Evangelia Christodoulou, Ben Glocker, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A Riegler, Manuel Wiesenfarth, A Emre Kavur, Carole H Sudre, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, Tim Rädsch, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B Blaschko, M Jorge Cardoso, Veronika Cheplygina, Beth A Cimini, Gary Stephen Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Robert Haase, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Florian Kofler, Dominik T Schneider, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Peter Mattson, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Nasir M Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M Summers, Abdel Aziz Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Paul F Jaeger
Metrics reloaded: recommendations for image analysis validation. Nature methods 21 (2) (2024)
Tathiane Maistro Malta, Thais S Sabedot, Natalia S Morosini, Indrani Datta, Luciano Garofano, Wies R Vallentgoed, Frederick S Varn, Kenneth D Aldape, Fulvio D'Angelo, Spyridon Bakas, Jill S Barnholtz-Sloan, Hui Kong Gan, Mohammad Hasanain, Ann-Christin Hau, Kevin C Johnson, Simona Cazacu, Ana C deCarvalho, Mustafa Khasraw, Emre Kocakavuk, Mathilde C M Kouwenhoven, Simona Migliozzi, Simone P Niclou, Johanna M Niers, David Ryan Ormond, Sun Ha Paek, Guido Reifenberger, Peter A E Sillevis Smitt, Marion Smits, Lucy F Stead, Martin J Van Den Bent, Erwin G Van Meir, Annemiek M E Walenkamp, Tobias Weiss, Michael Weller, Bart A Westerman, Bauke Ylstra, Pieter Wesseling, Anna Lasorella, Pim J French, Laila M Poisson, null null, Roel G W Verhaak, Antonio Iavarone, Houtan Noushmehr
The Epigenetic Evolution of Glioma Is Determined by the IDH1 Mutation Status and Treatment Regimen. Cancer research 84 (5) (2024)
Marius George Linguraru, Spyridon Bakas, Mariam S Aboian, Peter D Chang, Adam E Flanders, Jayashree Kalpathy-Cramer, Felipe Campos Kitamura, Matthew P Lungren, John T Mongan, Luciano M Prevedello, Ronald M Summers, Carol Chia Chia Wu, Maruf Adewole, Charles E Kahn
Clinical, Cultural, Computational, and Regulatory Considerations to Deploy AI in Radiology: Perspectives of RSNA and MICCAI Experts. Radiology. Artificial intelligence 6 (4) (2024)
Annika Reinke, Minu D Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A Emre Kavur, Tim Rädsch, Carole H Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Florian Buettner, M Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A Cimini, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Jens Kleesiek, Florian Kofler, Thijs Kooi, Dominik T Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M Rafelski, Nasir M Rajpoot, Mauricio Reyes, Michael A Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Ronald M Summers, Abdel A Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Ziv Rafael Yaniv, Paul F Jaeger, Lena Maier-Hein
Understanding metric-related pitfalls in image analysis validation. Nature methods 21 (2) (2024)
Burak Koçak, Tugba Akinci D'Antonoli, Nathaniel D Mercaldo, Ángel Alberich-Bayarri, Bettina Baeßler, Ilaria Ambrosini, Anna E Andreychenko, Spyridon Bakas, Regina G H Beets-Tan, Keno Kyrill Bressem, Irène Buvat, Roberto Cannella, Luca Alessandro Cappellini, Armando Ugo Cavallo, Leonid L Chepelev, Linda Chi Hang Chu, Aydin Demircioğlu, Nandita M deSouza, Matthias Dietzel, Salvatore Claudio Fanni, Andriy Y Fedorov, Laure S Fournier, Valentina Giannini, Rossano Girometti, Kevin B W Groot Lipman, Georgios Kalarakis, Brendan S Kelly, Michail E Klontzas, Dow-Mu Koh, Elmar Kotter, Ho Yun Lee, Mario Maas, Luis Martí-Bonmatí, Henning Muller, Nancy A Obuchowski, Fanny Orlhac, Nickolas Papanikolaou, Ekaterina Petrash, Elisabeth A G Pfaehler, Daniel Pinto Dos Santos, Andrea Ponsiglione, Sebastia' Sabater, Francesco Sardanelli, Philipp Seeböck, Nanna M Sijtsema, Arnaldo Stanzione, Alberto Traverso, Lorenzo Ugga, Martin Vallières, Lisanne V van Dijk, Joost J M van Griethuysen, Robbert Willem van Hamersvelt, Peter M A van Ooijen, Federica Vernuccio, Alan Wang, Stuart Williams, Jan Witowski, Zhongyi Zhang, Alexander Zwanenburg, Renato Cuocolo
METhodological RadiomICs Score (METRICS): a quality scoring tool for radiomics research endorsed by EuSoMII. Insights into imaging 15 (1) (2024)
Lena Maier-Hein, Annika Reinke, Patrick Godau, Minu D Tizabi, Florian Buettner, Evangelia Christodoulou, Ben Glocker, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A Riegler, Manuel Wiesenfarth, A Emre Kavur, Carole H Sudre, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, Tim Rädsch, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B Blaschko, M Jorge Cardoso, Veronika Cheplygina, Beth A Cimini, Gary Stephen Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Robert Haase, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Florian Kofler, Dominik T Schneider, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Peter Mattson, Erik Meijering, Bjoern H Menze, Karel G M Moons, Henning Muller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Nasir M Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M Summers, Abdel Aziz Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gael Varoquaux, Paul F Jaeger
Metrics reloaded: recommendations for image analysis validation. Nature methods 21 (2) (2024)
Divya Ramakrishnan, Leon Jekel, Saahil Chadha, Anastasia Janas, Harrison Moy, Nazanin Maleki, Matthew Sala, Manpreet Kaur, Gabriel Cassinelli Petersen, Sara Merkaj, Marc von Reppert, Ujjwal Baid, Spyridon Bakas, Claudia Kirsch, Melissa Davis, Khaled Bousabarah, Wolfgang Holler, MingDe Lin, Malte Westerhoff, Sanjay Aneja, Fatima Memon, Mariam S Aboian
A large open access dataset of brain metastasis 3D segmentations on MRI with clinical and imaging information. Scientific data 11 (1) (2024)
Burak Koçak, Tugba Akinci D'Antonoli, Nathaniel D Mercaldo, Ángel Alberich-Bayarri, Bettina Baeßler, Ilaria Ambrosini, Anna E Andreychenko, Spyridon Bakas, Regina G H Beets-Tan, Keno Kyrill Bressem, Irène Buvat, Roberto Cannella, Luca Alessandro Cappellini, Armando Ugo Cavallo, Leonid L Chepelev, Linda Chi Hang Chu, Aydin Demircioğlu, Nandita M deSouza, Matthias Dietzel, Salvatore Claudio Fanni, Andriy Y Fedorov, Laure S Fournier, Valentina Giannini, Rossano Girometti, Kevin B W Groot Lipman, Georgios Kalarakis, Brendan S Kelly, Michail E Klontzas, Dow-Mu Koh, Elmar Kotter, Ho Yun Lee, Mario Maas, Luis Martí-Bonmatí, Henning Muller, Nancy A Obuchowski, Fanny Orlhac, Nickolas Papanikolaou, Ekaterina Petrash, Elisabeth A G Pfaehler, Daniel Pinto Dos Santos, Andrea Ponsiglione, Sebastia' Sabater, Francesco Sardanelli, Philipp Seeböck, Nanna M Sijtsema, Arnaldo Stanzione, Alberto Traverso, Lorenzo Ugga, Martin Vallières, Lisanne V van Dijk, Joost J M van Griethuysen, Robbert Willem van Hamersvelt, Peter M A van Ooijen, Federica Vernuccio, Alan Wang, Stuart Williams, Jan Witowski, Zhongyi Zhang, Alexander Zwanenburg, Renato Cuocolo
METhodological RadiomICs Score (METRICS): a quality scoring tool for radiomics research endorsed by EuSoMII. Insights into imaging 15 (1) (2024)
Divya Ramakrishnan, Leon Jekel, Saahil Chadha, Anastasia Janas, Harrison Moy, Nazanin Maleki, Matthew Sala, Manpreet Kaur, Gabriel Cassinelli Petersen, Sara Merkaj, Marc von Reppert, Ujjwal Baid, Spyridon Bakas, Claudia Kirsch, Melissa Davis, Khaled Bousabarah, Wolfgang Holler, MingDe Lin, Malte Westerhoff, Sanjay Aneja, Fatima Memon, Mariam S Aboian
A large open access dataset of brain metastasis 3D segmentations on MRI with clinical and imaging information. Scientific data 11 (1) (2024)
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Federated benchmarking of medical artificial intelligence with MedPerf. Nature machine intelligence 5 (7) (2023)
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CheckList for EvaluAtion of Radiomics research (CLEAR): a step-by-step reporting guideline for authors and reviewers endorsed by ESR and EuSoMII. Insights into imaging 14 (1) (2023)
Jose L Agraz, Caleb M Grenko, Andrew A Chen, Angela N Viaene, MacLean D Nasrallah, Sarthak Pati, Tahsin Kurc, Joseph Saltz, Michael D Feldman, Hamed Akbari, Parth Sharma, Russell Taki Shinohara, Spyridon Bakas
Robust Image Population Based Stain Color Normalization: How Many Reference Slides Are Enough? IEEE open journal of engineering in medicine and biology 3 (2023)
Tathiane Maistro Malta, Thais S Sabedot, Natalia S Morosini, Indrani Datta, Luciano Garofano, Wies R Vallentgoed, Frederick S Varn, Kenneth D Aldape, Fulvio D'Angelo, Spyridon Bakas, Jill S Barnholtz-Sloan, Hui Kong Gan, Mohammad Hasanain, Ann-Christin Hau, Kevin C Johnson, Simona Cazacu, Ana C deCarvalho, Mustafa Khasraw, Emre Kocakavuk, Mathilde C M Kouwenhoven, Simona Migliozzi, Simone P Niclou, Johanna M Niers, David Ryan Ormond, Sun Ha Paek, Guido Reifenberger, Peter A E Sillevis Smitt, Marion Smits, Lucy F Stead, Martin J Van Den Bent, Erwin G Van Meir, Annemiek M E Walenkamp, Tobias Weiss, Michael Weller, Bart A Westerman, Bauke Ylstra, Pieter Wesseling, Anna Lasorella, Pim J French, Laila M Poisson, The Glass Consortium, Roel G W Verhaak, Antonio Iavarone, Houtan Noushmehr
The epigenetic evolution of glioma is determined by the IDH1 mutation status and treatment regimen. Cancer research (2023)
Alexandros Karargyris, Renato Umeton, Micah J Sheller, Alejandro Aristizabal, Johnu George, Anna Wuest, Sarthak Pati, Hasan Kassem, Maximilian Zenk, Ujjwal Baid, Prakash Narayana Moorthy, Alexander Chowdhury, Junyi Guo, Sahil Nalawade, Jacob Rosenthal, David Kanter, Maria Xenochristou, Daniel J Beutel, Verena Chung, Timothy Bergquist, James Eddy, Abubakar Abid, Lewis Tunstall, Omar Sanseviero, Dimitrios Dimitriadis, Yiming Qian, Xinxing Xu, Yong Liu, Rick Siow Mong Goh, Srini Bala, Victor Bittorf, Sreekar Reddy Puchala, Biagio Ricciuti, Soujanya Samineni, Eshna Sengupta, Akshay S Chaudhari, Cody Coleman, Bala Desinghu, Gregory Diamos, Debo Dutta, Diane Feddema, Grigori Fursin, Xinyuan Huang, Satyananda Kashyap, Nicholas Lane, Indranil Mallick, null null, null null, null null, Pietro Mascagni, Virendra Mehta, Cassiano Ferro Moraes, Vivek Natarajan, Nikola Nikolov, Nicolas Padoy, Gennady Pekhimenko, Vijay Janapa Reddi, G Anthony Reina, Pablo Ribalta, Abhishek Singh, Jayaraman J Thiagarajan, Jacob Albrecht, Thomas Wolf, Geralyn Miller, Huazhu Fu, Prashant Shah, Daguang Xu, Poonam Yadav, David Talby, Mark M Awad, Jeremy P Howard, Michael Rosenthal, Luigi Marchionni, Massimo Loda, Jason M Johnson, Spyridon Bakas, Peter Mattson
Federated benchmarking of medical artificial intelligence with MedPerf. Nature machine intelligence 5 (7) (2023)
Jan Lost, Leon Jekel, Leon Jekel, Marc von Reppert, Niklas Tillmanns, Sara Merkaj, Gabriel Cassinelli Petersen, Ryan C Bahar, Ayyüce Gordem, Muhammad A Haider, Harry Subramanian, Waverly Brim, Ichiro Ikuta, Antonio Omuro, Gian Marco Conte, Bernadette V Marquez-Nostra, Arman Avesta, Khaled Bousabarah, Ali Nabavizadeh, Anahita Fathi Kazerooni, Sanjay Aneja, Spyridon Bakas, Ming-De Lin, Michael Sabel, Mariam S Aboian
Systematic Literature Review of Machine Learning Algorithms Using Pretherapy Radiologic Imaging for Glioma Molecular Subtype Prediction. AJNR. American journal of neuroradiology (2023)
Jose L Agraz, Caleb M Grenko, Andrew A Chen, Angela N Viaene, MacLean D Nasrallah, Sarthak Pati, Tahsin Kurc, Joseph Saltz, Michael D Feldman, Hamed Akbari, Parth Sharma, Russell Taki Shinohara, Spyridon Bakas
Robust Image Population Based Stain Color Normalization: How Many Reference Slides Are Enough? IEEE open journal of engineering in medicine and biology 3 (2023)
Sarthak Pati, Ujjwal Baid, Brandon Edwards, Micah Sheller, Shih-Han Wang, G Anthony Reina, Patrick Foley, Alexey Gruzdev, Deepthi Karkada, Christos Davatzikos, Chiharu Sako, Satyam Ghodasara, Michel Bilello, Suyash Mohan, Phillipp Vollmuth, Gianluca Brugnara, Chandrakanth Jayachandran Preetha, Felix Sahm, Klaus H Maier-Hein, Maximilian Zenk, Martin Bendszus, Wolfgang Wick, Evan Calabrese, Jeffrey D Rudie, Javier Villanueva-Meyer, Soonmee Cha, Madhura Ingalhalikar, Manali Jadhav, Umang Pandey, Jitender Saini, John W Garrett, Matthew Larson, Robert Jeraj, Stuart Currie, Russell Frood, Kavi Fatania, Raymond Y Huang, Ken Chang, Carmen Balaña Quintero, Jaume Capellades, Josep Puig, Johannes Trenkler, Josef Pichler, Georg Necker, Andreas Haunschmidt, Stephan Meckel, Gaurav Shukla, Spencer Liem, Gregory S Alexander, Joseph Lombardo, Joshua David Palmer, Adam E Flanders, Adam P Dicker, Haris I Sair, Craig K Jones, Archana Venkataraman, Meirui Jiang, Tiffany Y So, Cheng Chen, Pheng Ann Heng, Qi Dou, Michal Kozubek, Filip Lux, Jan Michálek, Petr Matula, Miloš Keřkovský, Tereza Kopřivová, Marek Dostál, Václav Vybíhal, Michael A Vogelbaum, J Ross Mitchell, Joaquim M Farinhas, Joseph A Maldjian, Chandan Ganesh Bangalore Yogananda, Marco C Pinho, Divya Reddy, James Holcomb, Benjamin C Wagner, Benjamin M Ellingson, Timothy F Cloughesy, Catalina Raymond, Talia Oughourlian, Akifumi Hagiwara, Chencai Wang, Minh-Son To, Sargam Bhardwaj, Chee Chong, Marc Agzarian, Alexandre Xavier Falcão, Samuel B Martins, Bernardo Corrêa de Almeida Teixeira, Flavia Sprenger, David Menotti, Diego R Lucio, Pamela LaMontagne, Daniel Marcus, Benedikt Wiestler, Florian Kofler, Ivan Ezhov, Marie-Christin Metz, Rajan Jain, Matthew D Lee, Yvonne W Lui, Richard McKinley, Johannes Slotboom, Piotr Radojewski, Raphael Meier, Roland Wiest, Derrick Murcia, Eric Fu, Rourke Haas, John Thompson, David Ryan Ormond, Chaitra Badve, Andrew E Sloan, Vachan Vadmal, Kristin A Waite, Rivka R Colen, Linmin Pei, Murat Ak, Ashok Srinivasan, Rajiv Jayapalli Bapuraj, Arvind Rao, Nicholas C Wang, Ota Yoshiaki, Toshio Moritani, Sevcan Turk, Joonsang Lee, Snehal Prabhudesai, Fanny E Morón, Jacob J Mandel, Konstantinos Kamnitsas, Ben Glocker, Luke V M Dixon, Matthew Williams, Petros Zampakis, Vasileios Panagiotopoulos, Panagiotis Tsiganos, Sotiris Alexiou, Ilias Haliassos, Evangelia I Zacharaki, Konstantinos Moustakas, Christina Kalogeropoulou, Dimitrios M Kardamakis, Yoon Seong Choi, Seung-Koo Lee, Jong Hee Chang, Sung Soo Ahn, Bing Luo, Laila M Poisson, Ning Winston Wen, Pallavi Tiwari, Ruchika Verma, Rohan Bareja, Ipsa Yadav, Jonathan Chen, Neeraj Kumar, Marion Smits, Sebastian R van der Voort, Ahmed Alafandi, Fatih Incekara, Maarten M J Wijnenga, Georgios Kapsas, Renske Gahrmann, Joost W Schouten, Hendrikus Jan Dubbink, Arnaud J P E Vincent, Martin J Van Den Bent, Pim J French, Stefan Klein, Yading Yuan, Sonam Sharma, Tzu-Chi Tseng, Saba Adabi, Simone P Niclou, Olivier Keunen, Ann-Christin Hau, Martin Vallières, David Fortin, Martin Lepage, Bennett A Landman, Karthik Ramadass, Kaiwen Xu, Silky Chotai, Lola B Chambless, Akshitkumar Mistry, Reid C Thompson, Yuriy Gusev, Krithika Bhuvaneshwar, Anousheh Sayah, Camelia Bencheqroun, Anas Belouali, Subha Madhavan, Thomas C Booth, Alysha Chelliah, Marc Modat, Haris Shuaib, Carmen Dragos, Aly Abayazeed, Kenneth Kolodziej, Michael Hill, Ahmed Abbassy, Shady Gamal, Mahmoud Mekhaimar, Mohamed Qayati, Mauricio Reyes, Ji Eun Park, Jihye Yun, Ho Sung Kim, Abhishek Mahajan, Mark Muzi, Sean Benson, Regina G H Beets-Tan, Jonas Teuwen, Alejandro Herrera, Maria Trujillo, William Escobar, Ana Abello, Jose Bernal, Jhon Gómez, Joseph Choi, Stephen S Baek, Yusung Kim, Heba Ismael, Bryan G Allen, John M Buatti, Aikaterini Kotrotsou, Hongwei Li, Tobias Weiss, Michael Weller, Andrea Bink, Bertrand Pouymayou, Hassan F Shaykh, Joseph Saltz, Prateek Prasanna, Sampurna Shrestha, Kartik M Mani, David L Payne, Tahsin Kurc, Enrique Pelaez, Heydy Franco-Maldonado, Francis Loayza, Sebastian Quevedo, Pamela Guevara, Esteban Torche, Cristobal Mendoza, Franco Vera, Elvis Ríos, Eduardo López, Sergio A Velastin, Godwin Ogbole, Mayowa Soneye, Dotun Oyekunle, Olubunmi Odafe-Oyibotha, Babatunde Osobu, Mustapha Shu'aibu, Adeleye Dorcas, Farouk Dako, Amber L Simpson, Mohammad Hamghalam, Jacob J Peoples, Ricky Hu, Anh Tran, Danielle Cutler, Fabio Ynoe de Moraes, Michael A Boss, James Gimpel, Deepak Kattil Veettil, Kendall Schmidt, Brian Bialecki, Sailaja Marella, Cynthia Price, Lisa Cimino, Charles Apgar, Prashant Shah, Bjoern Menze, Jill S Barnholtz-Sloan, Jason Martin, Spyridon Bakas
Author Correction: Federated learning enables big data for rare cancer boundary detection. Nature communications 14 (1) (2023)
Sarthak Pati, Ujjwal Baid, Brandon Edwards, Micah Sheller, Shih-Han Wang, G Anthony Reina, Patrick Foley, Alexey Gruzdev, Deepthi Karkada, Christos Davatzikos, Chiharu Sako, Satyam Ghodasara, Michel Bilello, Suyash Mohan, Phillipp Vollmuth, Gianluca Brugnara, Chandrakanth Jayachandran Preetha, Felix Sahm, Klaus H Maier-Hein, Maximilian Zenk, Martin Bendszus, Wolfgang Wick, Evan Calabrese, Jeffrey D Rudie, Javier Villanueva-Meyer, Soonmee Cha, Madhura Ingalhalikar, Manali Jadhav, Umang Pandey, Jitender Saini, John W Garrett, Matthew Larson, Robert Jeraj, Stuart Currie, Russell Frood, Kavi Fatania, Raymond Y Huang, Ken Chang, Carmen Balaña Quintero, Jaume Capellades, Josep Puig, Johannes Trenkler, Josef Pichler, Georg Necker, Andreas Haunschmidt, Stephan Meckel, Gaurav Shukla, Spencer Liem, Gregory S Alexander, Joseph Lombardo, Joshua David Palmer, Adam E Flanders, Adam P Dicker, Haris I Sair, Craig K Jones, Archana Venkataraman, Meirui Jiang, Tiffany Y So, Cheng Chen, Pheng Ann Heng, Qi Dou, Michal Kozubek, Filip Lux, Jan Michálek, Petr Matula, Miloš Keřkovský, Tereza Kopřivová, Marek Dostál, Václav Vybíhal, Michael A Vogelbaum, J Ross Mitchell, Joaquim M Farinhas, Joseph A Maldjian, Chandan Ganesh Bangalore Yogananda, Marco C Pinho, Divya Reddy, James Holcomb, Benjamin C Wagner, Benjamin M Ellingson, Timothy F Cloughesy, Catalina Raymond, Talia Oughourlian, Akifumi Hagiwara, Chencai Wang, Minh-Son To, Sargam Bhardwaj, Chee Chong, Marc Agzarian, Alexandre Xavier Falcão, Samuel B Martins, Bernardo Corrêa de Almeida Teixeira, Flavia Sprenger, David Menotti, Diego R Lucio, Pamela LaMontagne, Daniel Marcus, Benedikt Wiestler, Florian Kofler, Ivan Ezhov, Marie-Christin Metz, Rajan Jain, Matthew D Lee, Yvonne W Lui, Richard McKinley, Johannes Slotboom, Piotr Radojewski, Raphael Meier, Roland Wiest, Derrick Murcia, Eric Fu, Rourke Haas, John Thompson, David Ryan Ormond, Chaitra Badve, Andrew E Sloan, Vachan Vadmal, Kristin A Waite, Rivka R Colen, Linmin Pei, Murat Ak, Ashok Srinivasan, Rajiv Jayapalli Bapuraj, Arvind Rao, Nicholas C Wang, Ota Yoshiaki, Toshio Moritani, Sevcan Turk, Joonsang Lee, Snehal Prabhudesai, Fanny E Morón, Jacob J Mandel, Konstantinos Kamnitsas, Ben Glocker, Luke V M Dixon, Matthew Williams, Petros Zampakis, Vasileios Panagiotopoulos, Panagiotis Tsiganos, Sotiris Alexiou, Ilias Haliassos, Evangelia I Zacharaki, Konstantinos Moustakas, Christina Kalogeropoulou, Dimitrios M Kardamakis, Yoon Seong Choi, Seung-Koo Lee, Jong Hee Chang, Sung Soo Ahn, Bing Luo, Laila M Poisson, Ning Winston Wen, Pallavi Tiwari, Ruchika Verma, Rohan Bareja, Ipsa Yadav, Jonathan Chen, Neeraj Kumar, Marion Smits, Sebastian R van der Voort, Ahmed Alafandi, Fatih Incekara, Maarten M J Wijnenga, Georgios Kapsas, Renske Gahrmann, Joost W Schouten, Hendrikus Jan Dubbink, Arnaud J P E Vincent, Martin J Van Den Bent, Pim J French, Stefan Klein, Yading Yuan, Sonam Sharma, Tzu-Chi Tseng, Saba Adabi, Simone P Niclou, Olivier Keunen, Ann-Christin Hau, Martin Vallières, David Fortin, Martin Lepage, Bennett A Landman, Karthik Ramadass, Kaiwen Xu, Silky Chotai, Lola B Chambless, Akshitkumar Mistry, Reid C Thompson, Yuriy Gusev, Krithika Bhuvaneshwar, Anousheh Sayah, Camelia Bencheqroun, Anas Belouali, Subha Madhavan, Thomas C Booth, Alysha Chelliah, Marc Modat, Haris Shuaib, Carmen Dragos, Aly Abayazeed, Kenneth Kolodziej, Michael Hill, Ahmed Abbassy, Shady Gamal, Mahmoud Mekhaimar, Mohamed Qayati, Mauricio Reyes, Ji Eun Park, Jihye Yun, Ho Sung Kim, Abhishek Mahajan, Mark Muzi, Sean Benson, Regina G H Beets-Tan, Jonas Teuwen, Alejandro Herrera, Maria Trujillo, William Escobar, Ana Abello, Jose Bernal, Jhon Gómez, Joseph Choi, Stephen S Baek, Yusung Kim, Heba Ismael, Bryan G Allen, John M Buatti, Aikaterini Kotrotsou, Hongwei Li, Tobias Weiss, Michael Weller, Andrea Bink, Bertrand Pouymayou, Hassan F Shaykh, Joseph Saltz, Prateek Prasanna, Sampurna Shrestha, Kartik M Mani, David L Payne, Tahsin Kurc, Enrique Pelaez, Heydy Franco-Maldonado, Francis Loayza, Sebastian Quevedo, Pamela Guevara, Esteban Torche, Cristobal Mendoza, Franco Vera, Elvis Ríos, Eduardo López, Sergio A Velastin, Godwin Ogbole, Mayowa Soneye, Dotun Oyekunle, Olubunmi Odafe-Oyibotha, Babatunde Osobu, Mustapha Shu'aibu, Adeleye Dorcas, Farouk Dako, Amber L Simpson, Mohammad Hamghalam, Jacob J Peoples, Ricky Hu, Anh Tran, Danielle Cutler, Fabio Ynoe de Moraes, Michael A Boss, James Gimpel, Deepak Kattil Veettil, Kendall Schmidt, Brian Bialecki, Sailaja Marella, Cynthia Price, Lisa Cimino, Charles Apgar, Prashant Shah, Bjoern Menze, Jill S Barnholtz-Sloan, Jason Martin, Spyridon Bakas
Author Correction: Federated learning enables big data for rare cancer boundary detection. Nature communications 14 (1) (2023)
Burak Koçak, Bettina Baeßler, Spyridon Bakas, Renato Cuocolo, Andriy Y Fedorov, Lena Maier-Hein, Nathaniel D Mercaldo, Henning Muller, Fanny Orlhac, Daniel Pinto Dos Santos, Arnaldo Stanzione, Lorenzo Ugga, Alexander Zwanenburg
CheckList for EvaluAtion of Radiomics research (CLEAR): a step-by-step reporting guideline for authors and reviewers endorsed by ESR and EuSoMII. Insights into imaging 14 (1) (2023)
Seyed Masoud Rezaeijo, Nahid Chegeni, Fariborz Baghaei Naeini, Dimitrios Makris, Spyridon Bakas
Within-Modality Synthesis and Novel Radiomic Evaluation of Brain MRI Scans. Cancers 15 (14) (2023)
Burak Koçak, Bettina Baeßler, Spyridon Bakas, Renato Cuocolo, Andriy Y Fedorov, Lena Maier-Hein, Nathaniel D Mercaldo, Henning Muller, Fanny Orlhac, Daniel Pinto Dos Santos, Arnaldo Stanzione, Lorenzo Ugga, Alexander Zwanenburg
CheckList for EvaluAtion of Radiomics research (CLEAR): a step-by-step reporting guideline for authors and reviewers endorsed by ESR and EuSoMII. Insights into imaging 14 (1) (2023)
Rhea Chitalia, Sarthak Pati, Megh Bhalerao, Siddhesh Pravin Thakur, Nariman Jahani, Vivian Belenky, Elizabeth S McDonald, Jessica Gibbs, David C Newitt, Nola M Hylton, Despina Kontos, Spyridon Bakas
Expert tumor annotations and radiomics for locally advanced breast cancer in DCE-MRI for ACRIN 6657/I-SPY1. Scientific data 9 (1) (2022)
Orhun Güley, Sarthak Pati, Spyridon Bakas
Classification of Infection and Ischemia in Diabetic Foot Ulcers Using VGG Architectures. Diabetic foot ulcers grand challenge : second challenge, DFUC 2021, held in conjunction with MICCAI 2021, Strasbourg, France, September 27, 2021 : proceedings. DFUC (Conference) (2nd : 2021 : Online) 13183 (2022)
Anousheh Sayah, Camelia Bencheqroun, Krithika Bhuvaneshwar, Anas Belouali, Spyridon Bakas, Chiharu Sako, Christos Davatzikos, Adil Alaoui, Subha Madhavan, Yuriy Gusev
Enhancing the REMBRANDT MRI collection with expert segmentation labels and quantitative radiomic features. Scientific data 9 (1) (2022)
Evan Calabrese, Javier E Villanueva-Meyer, Jeffrey D Rudie, Andreas M Rauschecker, Ujjwal Baid, Spyridon Bakas, Soonmee Cha, John T Mongan, Christopher P Hess
The University of California San Francisco Preoperative Diffuse Glioma MRI Dataset. Radiology. Artificial intelligence 4 (6) (2022)
Spyridon Bakas, Chiharu Sako, Hamed Akbari, Michel Bilello, Aristeidis Sotiras, Gaurav Shukla, Jeffrey D Rudie, Natali Flores Santamaría, Anahita Fathi Kazerooni, Sarthak Pati, Saima Rathore, Elizabeth Mamourian, Sung Min Ha, William Parker, Jimit Doshi, Ujjwal Baid, Mark Bergman, Zev A Binder, Ragini Verma, Robert A Lustig, Arati S Desai, Stephen J Bagley, Zissimos Mourelatos, Jennifer J D Morrissette, Christopher D Watt, Steven Brem, Ronald L Wolf, Elias R Melhem, Mac Lean P Nasrallah, Suyash Mohan, Donald M O'Rourke, Christos Davatzikos
The University of Pennsylvania glioblastoma (UPenn-GBM) cohort: advanced MRI, clinical, genomics, & radiomics. Scientific data 9 (1) (2022)
Sarthak Pati, Ujjwal Baid, Brandon Edwards, Micah J Sheller, Patrick Foley, G Anthony Reina, Siddhesh P Thakur, Chiharu Sako, Michel Bilello, Christos Davatzikos, Jason Martin, Prashant Shah, Bjoern H Menze, Spyridon Bakas
The federated tumor segmentation (FeTS) tool: an open-source solution to further solid tumor research. Physics in medicine and biology 67 (20) (2022)
Michela Antonelli, Annika Reinke, Spyridon Bakas, Keyvan Farahani, Dominik T Schneider, Bennett A Landman, Geert Litjens, Bjoern H Menze, Olaf Ronneberger, Ronald M Summers, Bram van Ginneken, Michel Bilello, Patrick Bilic, Patrick F Christ, Richard Kinh Gian Do, Marc J Gollub, Stephan H Heckers, Henkjan J Huisman, William R Jarnagin, Maureen K McHugo, Sandy Napel, Jennifer S Golia Pernicka, Kawal Rhode, Catalina Tobon-Gomez, Eugene Vorontsov, James A Meakin, Sebastien Ourselin, Manuel Wiesenfarth, Pablo Arbeláez, Byeong Uk Bae, Sihong Chen, Laura Daza, Jianjiang Feng, Baochun He, Fabian Isensee, Yuanfeng Ji, Fucang Jia, Ildoo Kim, Klaus H Maier-Hein, Dorit Merhof, Akshay Pai, Beomhee Park, Mathias Perslev, Ramin Rezaiifar, Oliver Rippel, Ignacio Sarasua, Wei Shen, Jaemin Son, Christian Wachinger, Liansheng Wang, Yan Wang, Yingda Xia, Daguang Xu, Zhanwei Xu, Yefeng Zheng, Amber L Simpson, Lena Maier-Hein, M Jorge Cardoso
The Medical Segmentation Decathlon. Nature communications 13 (1) (2022)
Evan Calabrese, Javier E Villanueva-Meyer, Jeffrey D Rudie, Andreas M Rauschecker, Ujjwal Baid, Spyridon Bakas, Soonmee Cha, John T Mongan, Christopher P Hess
The University of California San Francisco Preoperative Diffuse Glioma MRI Dataset. Radiology. Artificial intelligence 4 (6) (2022)
Patrick Foley, Micah J Sheller, Brandon Edwards, Sarthak Pati, Walter Riviera, Mansi Sharma, Prakash Narayana Moorthy, Shih-Han Wang, Jason Martin, Parsa Mirhaji, Prashant Shah, Spyridon Bakas
OpenFL: the open federated learning library. Physics in medicine and biology 67 (21) (2022)
Siddhesh P Thakur, Sarthak Pati, Ravi Panchumarthy, Deepthi Karkada, Junwen Wu, Dmitry Kurtaev, Chiharu Sako, Prashant Shah, Spyridon Bakas
Optimization of Deep Learning Based Brain Extraction in MRI for Low Resource Environments. Brainlesion : glioma, multiple sclerosis, stroke and traumatic brain injuries. BrainLes (Workshop) 12962 (2022)
Sarthak Pati, Ujjwal Baid, Brandon Edwards, Micah Sheller, Shih-Han Wang, G Anthony Reina, Patrick Foley, Alexey Gruzdev, Deepthi Karkada, Christos Davatzikos, Chiharu Sako, Satyam Ghodasara, Michel Bilello, Suyash Mohan, Phillipp Vollmuth, Gianluca Brugnara, Chandrakanth Jayachandran Preetha, Felix Sahm, Klaus H Maier-Hein, Maximilian Zenk, Martin Bendszus, Wolfgang Wick, Evan Calabrese, Jeffrey D Rudie, Javier Villanueva-Meyer, Soonmee Cha, Madhura Ingalhalikar, Manali Jadhav, Umang Pandey, Jitender Saini, John W Garrett, Matthew Larson, Robert Jeraj, Stuart Currie, Russell Frood, Kavi Fatania, Raymond Y Huang, Ken Chang, Carmen Balaña Quintero, Jaume Capellades, Josep Puig, Johannes Trenkler, Josef Pichler, Georg Necker, Andreas Haunschmidt, Stephan Meckel, Gaurav Shukla, Spencer Liem, Gregory S Alexander, Joseph Lombardo, Joshua David Palmer, Adam E Flanders, Adam P Dicker, Haris I Sair, Craig K Jones, Archana Venkataraman, Meirui Jiang, Tiffany Y So, Cheng Chen, Pheng Ann Heng, Qi Dou, Michal Kozubek, Filip Lux, Jan Michálek, Petr Matula, Miloš Keřkovský, Tereza Kopřivová, Marek Dostál, Václav Vybíhal, Michael A Vogelbaum, J Ross Mitchell, Joaquim M Farinhas, Joseph A Maldjian, Chandan Ganesh Bangalore Yogananda, Marco C Pinho, Divya Reddy, James Holcomb, Benjamin C Wagner, Benjamin M Ellingson, Timothy F Cloughesy, Catalina Raymond, Talia Oughourlian, Akifumi Hagiwara, Chencai Wang, Minh-Son To, Sargam Bhardwaj, Chee Chong, Marc Agzarian, Alexandre Xavier Falcão, Samuel B Martins, Bernardo Corrêa de Almeida Teixeira, Flavia Sprenger, David Menotti, Diego R Lucio, Pamela LaMontagne, Daniel Marcus, Benedikt Wiestler, Florian Kofler, Ivan Ezhov, Marie-Christin Metz, Rajan Jain, Matthew D Lee, Yvonne W Lui, Richard McKinley, Johannes Slotboom, Piotr Radojewski, Raphael Meier, Roland Wiest, Derrick Murcia, Eric Fu, Rourke Haas, John Thompson, David Ryan Ormond, Chaitra Badve, Andrew E Sloan, Vachan Vadmal, Kristin A Waite, Rivka R Colen, Linmin Pei, Murat Ak, Ashok Srinivasan, Rajiv Jayapalli Bapuraj, Arvind Rao, Nicholas C Wang, Ota Yoshiaki, Toshio Moritani, Sevcan Turk, Joonsang Lee, Snehal Prabhudesai, Fanny E Morón, Jacob J Mandel, Konstantinos Kamnitsas, Ben Glocker, Luke V M Dixon, Matthew Williams, Petros Zampakis, Vasileios Panagiotopoulos, Panagiotis Tsiganos, Sotiris Alexiou, Ilias Haliassos, Evangelia I Zacharaki, Konstantinos Moustakas, Christina Kalogeropoulou, Dimitrios M Kardamakis, Yoon Seong Choi, Seung-Koo Lee, Jong Hee Chang, Sung Soo Ahn, Bing Luo, Laila M Poisson, Ning Winston Wen, Pallavi Tiwari, Ruchika Verma, Rohan Bareja, Ipsa Yadav, Jonathan Chen, Neeraj Kumar, Marion Smits, Sebastian R van der Voort, Ahmed Alafandi, Fatih Incekara, Maarten M J Wijnenga, Georgios Kapsas, Renske Gahrmann, Joost W Schouten, Hendrikus Jan Dubbink, Arnaud J P E Vincent, Martin J Van Den Bent, Pim J French, Stefan Klein, Yading Yuan, Sonam Sharma, Tzu-Chi Tseng, Saba Adabi, Simone P Niclou, Olivier Keunen, Ann-Christin Hau, Martin Vallières, David Fortin, Martin Lepage, Bennett A Landman, Karthik Ramadass, Kaiwen Xu, Silky Chotai, Lola B Chambless, Akshitkumar Mistry, Reid C Thompson, Yuriy Gusev, Krithika Bhuvaneshwar, Anousheh Sayah, Camelia Bencheqroun, Anas Belouali, Subha Madhavan, Thomas C Booth, Alysha Chelliah, Marc Modat, Haris Shuaib, Carmen Dragos, Aly Abayazeed, Kenneth Kolodziej, Michael Hill, Ahmed Abbassy, Shady Gamal, Mahmoud Mekhaimar, Mohamed Qayati, Mauricio Reyes, Ji Eun Park, Jihye Yun, Ho Sung Kim, Abhishek Mahajan, Mark Muzi, Sean Benson, Regina G H Beets-Tan, Jonas Teuwen, Alejandro Herrera, Maria Trujillo, William Escobar, Ana Abello, Jose Bernal, Jhon Gómez, Joseph Choi, Stephen S Baek, Yusung Kim, Heba Ismael, Bryan G Allen, John M Buatti, Aikaterini Kotrotsou, Hongwei Li, Tobias Weiss, Michael Weller, Andrea Bink, Bertrand Pouymayou, Hassan F Shaykh, Joseph Saltz, Prateek Prasanna, Sampurna Shrestha, Kartik M Mani, David L Payne, Tahsin Kurc, Enrique Pelaez, Heydy Franco-Maldonado, Francis Loayza, Sebastian Quevedo, Pamela Guevara, Esteban Torche, Cristobal Mendoza, Franco Vera, Elvis Ríos, Eduardo López, Sergio A Velastin, Godwin Ogbole, Mayowa Soneye, Dotun Oyekunle, Olubunmi Odafe-Oyibotha, Babatunde Osobu, Mustapha Shu'aibu, Adeleye Dorcas, Farouk Dako, Amber L Simpson, Mohammad Hamghalam, Jacob J Peoples, Ricky Hu, Anh Tran, Danielle Cutler, Fabio Ynoe de Moraes, Michael A Boss, James Gimpel, Deepak Kattil Veettil, Kendall Schmidt, Brian Bialecki, Sailaja Marella, Cynthia Price, Lisa Cimino, Charles Apgar, Prashant Shah, Bjoern Menze, Jill S Barnholtz-Sloan, Jason Martin, Spyridon Bakas
Federated learning enables big data for rare cancer boundary detection. Nature communications 13 (1) (2022)
Anousheh Sayah, Camelia Bencheqroun, Krithika Bhuvaneshwar, Anas Belouali, Spyridon Bakas, Chiharu Sako, Christos Davatzikos, Adil Alaoui, Subha Madhavan, Yuriy Gusev
Author Correction: Enhancing the REMBRANDT MRI collection with expert segmentation labels and quantitative radiomic features. Scientific data 9 (1) (2022)
Dimitrios Bounias, Ashish Singh, Spyridon Bakas, Sarthak Pati, Saima Rathore, Hamed Akbari, Michel Bilello, Benjamin A Greenberger, Joseph Lombardo, Rhea D Chitalia, Nariman Jahani, Aimilia Gastounioti, Michelle Hershman, Leonid Roshkovan, Sharyn I Katz, Bardia Yousefi, Carolyn Lou, Amber L Simpson, Richard Kinh Gian Do, Russell T Shinohara, Despina Kontos, Konstantina Nikita, Christos Davatzikos
Interactive Machine Learning-Based Multi-Label Segmentation of Solid Tumors and Organs. Applied sciences (Basel, Switzerland) 11 (16) (2021)
Ludovic Venet, Sarthak Pati, Michael D Feldman, MacLean P Nasrallah, Paul Yushkevich, Spyridon Bakas
Accurate and Robust Alignment of Differently Stained Histologic Images Based on Greedy Diffeomorphic Registration. Applied sciences (Basel, Switzerland) 11 (4) (2021)
Shariq Mohammed, Visweswaran Ravikumar, Elisa Warner, Sohil H Patel, Spyridon Bakas, Arvind Rao, Rajan Jain
Quantifying T2-FLAIR Mismatch Using Geographically Weighted Regression and Predicting Molecular Status in Lower-Grade Gliomas. AJNR. American journal of neuroradiology (2021)
Micah J Sheller, Brandon Edwards, G Anthony Reina, Jason Martin, Sarthak Pati, Aikaterini Kotrotsou, Mikhail Milchenko, Weilin Xu, Daniel C Marcus, Rivka R Colen, Spyridon Bakas
Federated learning in medicine: facilitating multi-institutional collaborations without sharing patient data. Scientific reports 10 (1) (2020)
Sarthak Pati, Ashish Singh, Saima Rathore, Aimilia Gastounioti, Mark Bergman, Phuc Ngo, Sung Min Ha, Dimitrios Bounias, James Minock, Grayson Murphy, Hongming Li, Amit Bhattarai, Adam Wolf, Patmaa Sridaran, Ratheesh Kalarot, Hamed Akbari, Aristeidis Sotiras, Siddhesh P Thakur, Ragini Verma, Russell T Shinohara, Paul Yushkevich, Yong Fan, Despina Kontos, Christos Davatzikos, Spyridon Bakas
The Cancer Imaging Phenomics Toolkit (CaPTk): Technical Overview. Brainlesion : glioma, multiple sclerosis, stroke and traumatic brain injuries. BrainLes (Workshop) 11993 (2020)
Alexander Zwanenburg, Martin Vallières, Mahmoud A Abdalah, Hugo J W L Aerts, Vincent Andrearczyk, Aditya P Apte, Saeed Ashrafinia, Spyridon Bakas, Roelof J Beukinga, Ronald Boellaard, Marta Bogowicz, Luca Boldrini, Irène Buvat, Gary J R Cook, Christos Davatzikos, Adrien Depeursinge, Marie-Charlotte Desseroit, Nicola Dinapoli, Cuong Viet Dinh, Sebastian Echegaray, Issam El Naqa, Andriy Y Fedorov, Roberto Gatta, Robert James Gillies, Vicky J Goh, Michael Götz, Matthias Guckenberger, Sung Min Ha, Mathieu Hatt, Fabian Isensee, Philippe Lambin, Stefan Leger, Ralph T H Leijenaar, Jacopo Lenkowicz, Fiona Lippert, Are Losnegård, Klaus H Maier-Hein, Olivier Morin, Henning Muller, Sandy Napel, Christophe Nioche, Fanny Orlhac, Sarthak Pati, Elisabeth A G Pfaehler, Xinchi Hou, Arvind U K Rao, Jonas Scherer, Muhammad Musib Siddique, Nanna M Sijtsema, Jairo Socarras Fernandez, Emiliano Spezi, Roel J H M Steenbakkers, Stephanie Tanadini-Lang, Daniela Thorwarth, Esther G C Troost, Taman Upadhaya, Vincenzo Valentini, Lisanne V van Dijk, Joost J M van Griethuysen, Floris H P van Velden, Philip Whybra, Christian Richter, Steffen Loeck
The Image Biomarker Standardization Initiative: Standardized Quantitative Radiomics for High-Throughput Image-based Phenotyping. Radiology 295 (2) (2020)
Siddhesh P Thakur, Jimit Doshi, Sarthak Pati, Sung Min Ha, Chiharu Sako, Sanjay Talbar, Uday Kulkarni, Christos Davatzikos, Guray Erus, Spyridon Bakas
Skull-Stripping of Glioblastoma MRI Scans Using 3D Deep Learning. Brainlesion : glioma, multiple sclerosis, stroke and traumatic brain injuries. BrainLes (Workshop) 11992 (2020)
Sarthak Pati, Ruchika Verma, Hamed Akbari, Michel Bilello, Virginia B Hill, Chiharu Sako, Ramon Luis Correa-Medero, Niha Beig, Ludovic Venet, Siddhesh P Thakur, Prashant Serai, Sung Min Ha, Geri D Blake, Russell Taki Shinohara, Pallavi Tiwari, Spyridon Bakas
Reproducibility analysis of multi-institutional paired expert annotations and radiomic features of the Ivy Glioblastoma Atlas Project (Ivy GAP) dataset. Medical physics 47 (12) (2020)
Caleb M Grenko, Angela N Viaene, MacLean P Nasrallah, Michael D Feldman, Hamed Akbari, Spyridon Bakas
Towards Population-Based Histologic Stain Normalization of Glioblastoma. Brainlesion : glioma, multiple sclerosis, stroke and traumatic brain injuries. BrainLes (Workshop) 11992 (2020)
Spyridon Bakas, Gaurav Shukla, Hamed Akbari, Guray Erus, Aristeidis Sotiras, Saima Rathore, Chiharu Sako, Sung Min Ha, Martin Rozycki, Russell Taki Shinohara, Michel Bilello, Christos Davatzikos
Overall survival prediction in glioblastoma patients using structural magnetic resonance imaging (MRI): advanced radiomic features may compensate for lack of advanced MRI modalities. Journal of medical imaging (Bellingham, Wash.) 7 (3) (2020)
Spyridon Bakas, Michael D Feldman
Computational staining of unlabelled tissue. Nature biomedical engineering 3 (6) (2020)
Anahita Fathi Kazerooni, Spyridon Bakas, Hamidreza Saligheh Rad, Christos Davatzikos
Imaging signatures of glioblastoma molecular characteristics: A radiogenomics review. Journal of magnetic resonance imaging : JMRI 52 (1) (2019)
Micah J Sheller, G Anthony Reina, Brandon Edwards, Jason Martin, Spyridon Bakas
Multi-Institutional Deep Learning Modeling Without Sharing Patient Data: A Feasibility Study on Brain Tumor Segmentation. Brainlesion : glioma, multiple sclerosis, stroke and traumatic brain injuries. BrainLes (Workshop) 11383 (2019)
Samar S M Elsheikh, Spyridon Bakas, Nicola J Mulder, Emile R Chimusa, Christos Davatzikos, Alessandro Crimi
Multi-stage Association Analysis of Glioblastoma Gene Expressions with Texture and Spatial Patterns. Brainlesion : glioma, multiple sclerosis, stroke and traumatic brain injuries. BrainLes (Workshop) 11383 (2019)
Christos Davatzikos, Saima Rathore, Spyridon Bakas, Sarthak Pati, Mark Bergman, Ratheesh Kalarot, Patmaa Sridharan, Aimilia Gastounioti, Nariman Jahani, Eric Cohen, Hamed Akbari, Birkan Tunc, Jimit Doshi, Drew Parker, Michael Hsieh, Aristeidis Sotiras, Hongming Li, Yangming Ou, Robert K Doot, Michel Bilello, Yong Fan, Russell T Shinohara, Paul Yushkevich, Ragini Verma, Despina Kontos
Cancer imaging phenomics toolkit: quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome. Journal of medical imaging (Bellingham, Wash.) 5 (1) (2018)
Spyridon Bakas, Hamed Akbari, Aristeidis Sotiras, Michel Bilello, Martin Rozycki, Justin S Kirby, John B Freymann, Keyvan Farahani, Christos Davatzikos
Advancing The Cancer Genome Atlas glioma MRI collections with expert segmentation labels and radiomic features. Scientific data 4 (2017)

Spyridon Bakas.css-eqlu8i{font-size:small;padding-left:4px;} (S Bakas)

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Spyridon Bakas (S Bakas)