Mingyao Li

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 37

Top Venues

Arteriosclerosis, thrombosis, and vascular biology

Nature biotechnology

bioRxiv : the preprint server for biology

Human brain mapping

University of Pennsylvania

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Pennsylvania Jan 01 2006

United States

Professor :: Biostatistics, Epidemiology and Informatics

Publications

Alexander C Bashore, Chenyi Xue, Eunyoung Kim, Hanying Yan, Lucie Y Zhu, Huize Pan, Michael Kissner, Leila S Ross, Hanrui Zhang, Mingyao Li, Muredach P Reilly
Monocyte Single-Cell Multimodal Profiling in Cardiovascular Disease Risk States. Circulation research (2024)
Daiwei Zhang, Amelia Schroeder, Hanying Yan, Haochen Yang, Jian Hu, Michelle Y Y Lee, Kyung S Cho, Katalin Suszták, George X Xu, Michael D Feldman, Edward B Lee, Emma E Furth, Linghua Wang, Mingyao Li
Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology. Nature biotechnology (2024)
Allen Chung, Hyun K Chang, Huize Pan, Alexander C Bashore, Karissa Shuck, Caio V Matias, Juliana Gomez, Hanying Yan, Mingyao Li, Robert C Bauer
ADAMTS7 Promotes Smooth Muscle Cell Foam Cell Expansion in Atherosclerosis. bioRxiv : the preprint server for biology (2024)
Alexander C Bashore, Hanying Yan, Chenyi Xue, Lucie Y Zhu, Eunyoung Kim, Thomas Mawson, Johana Coronel, Allen Chung, Nadja Sachs, Sebastian Ho, Leila S Ross, Michael Kissner, Emmanuelle Passegue, Robert C Bauer, Lars Maegdefessel, Mingyao Li, Muredach P Reilly
High-Dimensional Single-Cell Multimodal Landscape of Human Carotid Atherosclerosis. Arteriosclerosis, thrombosis, and vascular biology 44 (4) (2024)
Alexander C Bashore, Hanying Yan, Chenyi Xue, Lucie Y Zhu, Eunyoung Kim, Thomas Mawson, Johana Coronel, Allen Chung, Nadja Sachs, Sebastian Ho, Leila S Ross, Michael Kissner, Emmanuelle Passegue, Robert C Bauer, Lars Maegdefessel, Mingyao Li, Muredach P Reilly
High-Dimensional Single-Cell Multimodal Landscape of Human Carotid Atherosclerosis. Arteriosclerosis, thrombosis, and vascular biology 44 (4) (2024)
Alexander C Bashore, Allen Chung, Chinyere Ibikunle, Hanying Yan, Chenyi Xue, Mingyao Li, Robert C Bauer, Muredach P Reilly
Single-Cell Multimodal Profiling of Atherosclerosis Identifies CD200 as a Cell Surface Lineage Marker of Vascular Smooth Muscle Cells and Their Derived Cells. Circulation 149 (15) (2024)
Daiwei Zhang, Amelia Schroeder, Hanying Yan, Haochen Yang, Jian Hu, Michelle Y Y Lee, Kyung S Cho, Katalin Suszták, George X Xu, Michael D Feldman, Edward B Lee, Emma E Furth, Linghua Wang, Mingyao Li
Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology. Nature biotechnology (2024)
Alexander C Bashore, Hanying Yan, Chenyi Xue, Lucie Y Zhu, Eunyoung Kim, Thomas Mawson, Johana Coronel, Allen Chung, Nadja Sachs, Sebastian Ho, Leila S Ross, Michael Kissner, Emmanuelle Passegue, Robert C Bauer, Lars Maegdefessel, Mingyao Li, Muredach P Reilly
High-Dimensional Single-Cell Multimodal Landscape of Human Carotid Atherosclerosis. Arteriosclerosis, thrombosis, and vascular biology (2024)
Sarah M Weinstein, Simon N Vandekar, Bin Li, Aaron F Alexander-Bloch, Armin Raznahan, Mingyao Li, Raquel E Gur, Ruben E Gur, David R Roalf, Min Tae M Park, M Mallar Chakravarty, Erica B Baller, Kristin A Linn, Theodore Daniel Satterthwaite, Russell Taki Shinohara
Network enrichment significance testing in brain-phenotype association studies. Human brain mapping 45 (8) (2024)
Alexander C Bashore, Allen Chung, Chinyere Ibikunle, Hanying Yan, Chenyi Xue, Mingyao Li, Robert C Bauer, Muredach P Reilly
Single-Cell Multimodal Profiling of Atherosclerosis Identifies CD200 as a Cell Surface Lineage Marker of Vascular Smooth Muscle Cells and Their Derived Cells. Circulation 149 (15) (2024)
Alexander C Bashore, Hanying Yan, Chenyi Xue, Lucie Y Zhu, Eunyoung Kim, Thomas Mawson, Johana Coronel, Allen Chung, Nadja Sachs, Sebastian Ho, Leila S Ross, Michael Kissner, Emmanuelle Passegue, Robert C Bauer, Lars Maegdefessel, Mingyao Li, Muredach P Reilly
High-Dimensional Single-Cell Multimodal Landscape of Human Carotid Atherosclerosis. Arteriosclerosis, thrombosis, and vascular biology 44 (4) (2024)
Linghua Wang, Mingyao Li, Tae Hyun Hwang
The 3D Revolution in Cancer Discovery. Cancer discovery 14 (4) (2024)
Alexander C Bashore, Hanying Yan, Chenyi Xue, Lucie Y Zhu, Eunyoung Kim, Thomas Mawson, Johana Coronel, Allen Chung, Nadja Sachs, Sebastian Ho, Leila S Ross, Michael Kissner, Emmanuelle Passegue, Robert C Bauer, Lars Maegdefessel, Mingyao Li, Muredach P Reilly
High-Dimensional Single-Cell Multimodal Landscape of Human Carotid Atherosclerosis. Arteriosclerosis, thrombosis, and vascular biology (2024)
Alexander C Bashore, Allen Chung, Chinyere Ibikunle, Hanying Yan, Chenyi Xue, Mingyao Li, Robert C Bauer, Muredach P Reilly
Single-Cell Multimodal Profiling of Atherosclerosis Identifies CD200 as a Cell Surface Lineage Marker of Vascular Smooth Muscle Cells and Their Derived Cells. Circulation 149 (15) (2024)
Alexander C Bashore, Chenyi Xue, Eunyoung Kim, Hanying Yan, Lucie Y Zhu, Huize Pan, Michael Kissner, Leila S Ross, Hanrui Zhang, Mingyao Li, Muredach P Reilly
Monocyte Single-Cell Multimodal Profiling in Cardiovascular Disease Risk States. Circulation research 135 (6) (2024)
Daiwei Zhang, Amelia Schroeder, Hanying Yan, Haochen Yang, Jian Hu, Michelle Y Y Lee, Kyung S Cho, Katalin Suszták, George X Xu, Michael D Feldman, Edward B Lee, Emma E Furth, Linghua Wang, Mingyao Li
Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology. Nature biotechnology (2024)
Daiwei Zhang, Amelia Schroeder, Hanying Yan, Haochen Yang, Jian Hu, Michelle Y Y Lee, Kyung S Cho, Katalin Suszták, George X Xu, Michael D Feldman, Edward B Lee, Emma E Furth, Linghua Wang, Mingyao Li
Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology. Nature biotechnology (2024)
Daiwei Zhang, Amelia Schroeder, Hanying Yan, Haochen Yang, Jian Hu, Michelle Y Y Lee, Kyung S Cho, Katalin Suszták, George X Xu, Michael D Feldman, Edward B Lee, Emma E Furth, Linghua Wang, Mingyao Li
Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology. Nature biotechnology (2024)
Alexander C Bashore, Hanying Yan, Chenyi Xue, Lucie Y Zhu, Eunyoung Kim, Thomas Mawson, Johana Coronel, Allen Chung, Nadja Sachs, Sebastian Ho, Leila S Ross, Michael Kissner, Emmanuelle Passegue, Robert C Bauer, Lars Maegdefessel, Mingyao Li, Muredach P Reilly
High-Dimensional Single-Cell Multimodal Landscape of Human Carotid Atherosclerosis. Arteriosclerosis, thrombosis, and vascular biology 44 (4) (2024)
Alexander C Bashore, Allen Chung, Chinyere Ibikunle, Hanying Yan, Chenyi Xue, Mingyao Li, Robert C Bauer, Muredach P Reilly
Single-Cell Multimodal Profiling of Atherosclerosis Identifies CD200 as a Cell Surface Lineage Marker of Vascular Smooth Muscle Cells and Their Derived Cells. Circulation 149 (15) (2024)
Sarah M Weinstein, Simon N Vandekar, Bin Li, Aaron F Alexander-Bloch, Armin Raznahan, Mingyao Li, Raquel E Gur, Ruben E Gur, David R Roalf, Min Tae M Park, M Mallar Chakravarty, Erica B Baller, Kristin A Linn, Theodore Daniel Satterthwaite, Russell Taki Shinohara
Network enrichment significance testing in brain-phenotype association studies. Human brain mapping 45 (8) (2024)
Sarah M Weinstein, Simon N Vandekar, Bin Li, Aaron F Alexander-Bloch, Armin Raznahan, Mingyao Li, Raquel E Gur, Ruben E Gur, David R Roalf, Min Tae M Park, M Mallar Chakravarty, Erica B Baller, Kristin A Linn, Theodore Daniel Satterthwaite, Russell Taki Shinohara
Network enrichment significance testing in brain-phenotype association studies. Human brain mapping 45 (8) (2024)
Alexander C Bashore, Chenyi Xue, Eunyoung Kim, Hanying Yan, Lucie Y Zhu, Huize Pan, Michael Kissner, Leila S Ross, Hanrui Zhang, Mingyao Li, Muredach P Reilly
Monocyte Single-Cell Multimodal Profiling in Cardiovascular Disease Risk States. Circulation research 135 (6) (2024)
Sarah M Weinstein, Simon N Vandekar, Bin Li, Aaron F Alexander-Bloch, Armin Raznahan, Mingyao Li, Raquel E Gur, Ruben E Gur, David R Roalf, Min Tae M Park, M Mallar Chakravarty, Erica B Baller, Kristin A Linn, Theodore Daniel Satterthwaite, Russell Taki Shinohara
Network enrichment significance testing in brain-phenotype association studies. Human brain mapping 45 (8) (2024)
Kyle Coleman, Jian Hu, Amelia Schroeder, Edward B Lee, Mingyao Li
SpaDecon: cell-type deconvolution in spatial transcriptomics with semi-supervised learning. Communications biology 6 (1) (2023)
Fengling Hu, Alfredo Lucas, Andrew A Chen, Kyle Coleman, Hannah Horng, Raymond W S Ng, Nicholas James Tustison, Kathryn Adamiak Davis, Haochang Shou, Mingyao Li, Russell Taki Shinohara, null null
DeepComBat: A Statistically Motivated, Hyperparameter-Robust, Deep Learning Approach to Harmonization of Neuroimaging Data. bioRxiv : the preprint server for biology (2023)
Fengling Hu, Alfredo Lucas, Andrew A Chen, Kyle Coleman, Hannah Horng, Raymond W S Ng, Nicholas James Tustison, Kathryn Adamiak Davis, Haochang Shou, Mingyao Li, Russell Taki Shinohara, null null
DeepComBat: A Statistically Motivated, Hyperparameter-Robust, Deep Learning Approach to Harmonization of Neuroimaging Data. bioRxiv : the preprint server for biology (2023)
Sarah M Weinstein, Simon N Vandekar, Aaron F Alexander-Bloch, Armin Raznahan, Mingyao Li, Raquel E Gur, Ruben E Gur, David R Roalf, Min Tae M Park, M Mallar Chakravarty, Erica B Baller, Kristin A Linn, Theodore Daniel Satterthwaite, Russell Taki Shinohara
Network Enrichment Significance Testing in Brain-Phenotype Association Studies. bioRxiv : the preprint server for biology (2023)
Fengling Hu, Alfredo Lucas, Andrew A Chen, Kyle Coleman, Hannah Horng, Raymond W S Ng, Nicholas James Tustison, Kathryn Adamiak Davis, Haochang Shou, Mingyao Li, Russell Taki Shinohara, null null
DeepComBat: A Statistically Motivated, Hyperparameter-Robust, Deep Learning Approach to Harmonization of Neuroimaging Data. bioRxiv : the preprint server for biology (2023)
Dapeng Hao, Guangchun Han, Ansam Sinjab, Lorena Isabel Gomez-Bolanos, Rossana Lazcano, Alejandra Griselda Serrano, Sharia D Hernandez, Enyu Dai, Xuanye Cao, Jian Hu, Minghao Dang, Ruiping Wang, Yanshuo Chu, Xingzhi Song, Jianhua Zhang, Edwin Roger Parra Cuentes, Jennifer A Wargo, Stephen G Swisher, Cascone Tina, Boris Sepesi, P Andrew Futreal, Mingyao Li, Steven M Dubinett, Junya Fujimoto, Luisa Maren Solis Soto, Ignacio I Wistuba, Christopher S Stevenson, Avrum E Spira, Shabnam Shalapour, Humam Kadara, Linghua Wang
The Single-Cell Immunogenomic Landscape of B and Plasma Cells in Early-Stage Lung Adenocarcinoma. Cancer discovery 12 (11) (2022)
Jiaxin Fan, Xuran Wang, Rui Xiao, Mingyao Li
Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data. PLoS genetics 17 (3) (2021)
Jian Hu, Xiangjie Li, Kyle Coleman, Amelia Schroeder, Nan Ma, David John Irwin, Edward B Lee, Russell T Shinohara, Mingyao Li
SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network. Nature methods 18 (11) (2021)
Ruth Choa, Junichiro Tohyama, Shogo Wada, Hu Meng, Jian Hu, Mariko Okumura, Rebecca M May, Tanner Ford Robertson, Ruth-Anne Langan Pai, Arben Nace, Christian Hopkins, Elizabeth A Jacobsen, Malay Haldar, Garret A FitzGerald, Edward M Behrens, Andy J Minn, Patrick Seale, George Cotsarelis, Brian S Kim, John T Seykora, Mingyao Li, Zoltan Arany, Taku Kambayashi
Thymic stromal lymphopoietin induces adipose loss through sebum hypersecretion. Science (New York, N.Y.) 373 (6554) (2021)
Jiaxin Fan, Jian Hu, Chenyi Xue, Hanrui Zhang, Katalin Suszták, Muredach P Reilly, Rui Xiao, Mingyao Li
ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing. PLoS genetics 16 (5) (2020)
Xiangjie Li, Kui Wang, Yafei Lyu, Huize Pan, Jingxiao Zhang, Dwight Stambolian, Katalin Suszták, Muredach P Reilly, Gang Hu, Mingyao Li
Deep learning enables accurate clustering with batch effect removal in single-cell RNA-seq analysis. Nature communications 11 (1) (2020)
Yun Rose Li, Joseph T Glessner, Bradley P Coe, Jin Li, Maedeh Mohebnasab, Xiao Chang, John Connolly, Charlly Kao, Zhi Wei, Jonathan Bradfield, Cecilia Kim, Cuiping Hou, Munir Khan, Frank Mentch, Haijun Qiu, Marina Bakay, Christopher J Cardinale, Maria Lemma, Debra Abrams, Andrew Bridglall-Jhingoor, Meckenzie Behr, Shanell Harrison, George Otieno, Alexandria Thomas, Fengxiang Wang, Rosetta Chiavacci, Lawrence Wu, Dexter Hadley, Elizabeth Goldmuntz, Josephine Elia, John Maris, Robert Grundmeier, Marcella Devoto, Brendan Keating, Michael E March, Renata Pellagrino, Struan F A Grant, Patrick M A Sleiman, Mingyao Li, Evan E Eichler, Hakon H Hakonarson
Rare copy number variants in over 100,000 European ancestry subjects reveal multiple disease associations. Nature communications 11 (1) (2020)
Junling Fu, Yonghui Wang, Ge Li, Lanwen Han, Yu Li, Lujiao Li, Dan Feng, Yunpeng Wu, Xinhua Xiao, Mingyao Li, Struan F A Grant, Ming Li, Shan Gao
Childhood sleep duration modifies the polygenic risk for obesity in youth through leptin pathway: the Beijing Child and Adolescent Metabolic Syndrome cohort study. International journal of obesity (2005) 43 (8) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Mingyao Li