Avi I Flamholz (Avi Flamholz)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 31

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

bioRxiv : the preprint server for biology

eLife

mBio

Via Transportation

University of California Berkeley (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Via Transportation Aug 01 2012 - Aug 01 2013

United States

Technical Lead

Via Transportation Aug 01 2012 - Aug 01 2013

United States

Technical Lead

Google Inc Sep 01 2007 - Jul 10 2010

United States

Software Engineer :: Search

Education History

University of California Berkeley Sep 01 2013

United States

PHD :: Molecular and Cell Biology

Publications

Avi I Flamholz, Akshit Goyal, Woodward W Fischer, Dianne K Newman, Rob Phillips
The proteome is a terminal electron acceptor. bioRxiv : the preprint server for biology (2024)
Avi I Flamholz, Akshit Goyal, Woodward W Fischer, Dianne K Newman, Rob Phillips
The proteome is a terminal electron acceptor. bioRxiv : the preprint server for biology (2024)
Avi I Flamholz, Akshit Goyal, Woodward W Fischer, Dianne K Newman, Rob Phillips
The proteome is a terminal electron acceptor. bioRxiv : the preprint server for biology (2024)
Avi I Flamholz, Joshua E Goldford, Philippa A Richter, Elin M Larsson, Adrian Jinich, Woodward W Fischer, Dianne K Newman
Annotation-free prediction of microbial dioxygen utilization. mSystems (2024)
Nicholas C Lammers, Avi I Flamholz, Hernan G Garcia
Competing constraints shape the nonequilibrium limits of cellular decision-making. Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Akshit Goyal, Avi I Flamholz, Alexander P Petroff, Arvind Murugan
Closed ecosystems extract energy through self-organized nutrient cycles. Proceedings of the National Academy of Sciences of the United States of America 120 (52) (2023)
Renée Z Wang, Robert J Nichols, Albert K Liu, Avi I Flamholz, Juliana Artier, Douglas M Banda, David F Savage, John M Eiler, Patrick M Shih, Woodward W Fischer
Carbon isotope fractionation by an ancestral rubisco suggests that biological proxies for CO 2 through geologic time should be reevaluated. Proceedings of the National Academy of Sciences of the United States of America 120 (20) (2023)
Akshit Goyal, Avi I Flamholz, Alexander P Petroff, Arvind Murugan
Closed ecosystems extract energy through self-organized nutrient cycles. Proceedings of the National Academy of Sciences of the United States of America 120 (52) (2023)
Nicholas C Lammers, Avi I Flamholz, Hernan G Garcia
Competing constraints shape the nonequilibrium limits of cellular decision-making. Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Akshit Goyal, Avi I Flamholz, Alexander P Petroff, Arvind Murugan
Closed ecosystems extract energy through self-organized nutrient cycles. Proceedings of the National Academy of Sciences of the United States of America 120 (52) (2023)
Renée Z Wang, Robert J Nichols, Albert K Liu, Avi I Flamholz, Juliana Artier, Douglas M Banda, David F Savage, John M Eiler, Patrick M Shih, Woodward W Fischer
Carbon isotope fractionation by an ancestral rubisco suggests that biological proxies for CO 2 through geologic time should be reevaluated. Proceedings of the National Academy of Sciences of the United States of America 120 (20) (2023)
Akshit Goyal, Avi I Flamholz, Alexander P Petroff, Arvind Murugan
Closed ecosystems extract energy through self-organized nutrient cycles. Proceedings of the National Academy of Sciences of the United States of America 120 (52) (2023)
Nicholas C Lammers, Avi I Flamholz, Hernan G Garcia
Competing constraints shape the nonequilibrium limits of cellular decision-making. Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Akshit Goyal, Avi I Flamholz, Alexander P Petroff, Arvind Murugan
Closed ecosystems extract energy through self-organized nutrient cycles. Proceedings of the National Academy of Sciences of the United States of America 120 (52) (2023)
Nicholas C Lammers, Avi I Flamholz, Hernan G Garcia
Competing constraints shape the nonequilibrium limits of cellular decision-making. Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Akshit Goyal, Avi I Flamholz, Alexander P Petroff, Arvind Murugan
Closed ecosystems extract energy through self-organized nutrient cycles. Proceedings of the National Academy of Sciences of the United States of America 120 (52) (2023)
Akshit Goyal, Avi I Flamholz, Alexander P Petroff, Arvind Murugan
Closed ecosystems extract energy through self-organized nutrient cycles. Proceedings of the National Academy of Sciences of the United States of America 120 (52) (2023)
Renée Z Wang, Robert J Nichols, Albert K Liu, Avi I Flamholz, Juliana Artier, Douglas M Banda, David F Savage, John M Eiler, Patrick M Shih, Woodward W Fischer
Carbon isotope fractionation by an ancestral rubisco suggests that biological proxies for CO 2 through geologic time should be reevaluated. Proceedings of the National Academy of Sciences of the United States of America 120 (20) (2023)
Renée Z Wang, Robert J Nichols, Albert K Liu, Avi I Flamholz, Juliana Artier, Douglas M Banda, David F Savage, John M Eiler, Patrick M Shih, Woodward W Fischer
Carbon isotope fractionation by an ancestral rubisco suggests that biological proxies for CO 2 through geologic time should be reevaluated. Proceedings of the National Academy of Sciences of the United States of America 120 (20) (2023)
Renée Z Wang, Robert J Nichols, Albert K Liu, Avi I Flamholz, Juliana Artier, Douglas M Banda, David F Savage, John M Eiler, Patrick M Shih, Woodward W Fischer
Carbon isotope fractionation by an ancestral rubisco suggests that biological proxies for CO 2 through geologic time should be reevaluated. Proceedings of the National Academy of Sciences of the United States of America 120 (20) (2023)
Nicholas C Lammers, Avi I Flamholz, Hernan G Garcia
Competing constraints shape the nonequilibrium limits of cellular decision-making. Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Nicholas C Lammers, Avi I Flamholz, Hernan G Garcia
Competing constraints shape the nonequilibrium limits of cellular decision-making. Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Avi I Flamholz, Eli J Dugan, Justin Panich, John James Desmarais, Luke M Oltrogge, Woodward W Fischer, Steven W Singer, David F Savage
Trajectories for the evolution of bacterial CO 2 -concentrating mechanisms. Proceedings of the National Academy of Sciences of the United States of America 119 (49) (2022)
Avi I Flamholz, Samuel C Saccomano, Kevin J Cash, Dianne K Newman
Optical O 2 Sensors Also Respond to Redox Active Molecules Commonly Secreted by Bacteria. mBio (2022)
Elad Noor, Avi I Flamholz, Vijay Jayaraman, Brian L Ross, Yair Cohen, Wayne M Patrick, Ita Gruic-Sovulj, Dan S Tawfik
Uniform binding and negative catalysis at the origin of enzymes. Protein science : a publication of the Protein Society 31 (8) (2022)
Joshua E Goldford, Ashish B George, Avi I Flamholz, Daniel Segrè
Protein cost minimization promotes the emergence of coenzyme redundancy. Proceedings of the National Academy of Sciences of the United States of America 119 (14) (2022)
Ron Sender, Yinon M Bar-On, Shmuel Gleizer, Biana Bernshtein, Avi I Flamholz, Rob Phillips, Ron Milo
The total number and mass of SARS-CoV-2 virions. Proceedings of the National Academy of Sciences of the United States of America 118 (25) (2021)
Avi I Flamholz, Eli J Dugan, Cecilia Blikstad, Shmuel Gleizer, Roee Ben-Nissan, Shira Amram, Niv Antonovsky, Sumedha Ravishankar, Elad Noor, Arren Bar-Even, Ron Milo, David F Savage
Functional reconstitution of a bacterial CO2 concentrating mechanism in Escherichia coli. eLife 9 (2020)
Dan Davidi, Melina Shamshoum, Zhijun Guo, Yinon M Bar-On, Noam Prywes, Aia Oz, Jagoda Jablonska, Avi I Flamholz, David G Wernick, Niv Antonovsky, Benoit de Pins, Lior Shachar, Dina Hochhauser, Yoav Peleg, Shira Albeck, Itai Sharon, Oliver Mueller-Cajar, Ron Milo
Highly active rubiscos discovered by systematic interrogation of natural sequence diversity. The EMBO journal 39 (18) (2020)
Nico J Claassens, Giovanni Scarinci, Axel Fischer, Avi I Flamholz, William Newell, Stefan Frielingsdorf, Oliver Lenz, Arren Bar-Even
Phosphoglycolate salvage in a chemolithoautotroph using the Calvin cycle. Proceedings of the National Academy of Sciences of the United States of America 117 (36) (2020)
Yinon M Bar-On, Avi I Flamholz, Rob Phillips, Ron Milo
SARS-CoV-2 (COVID-19) by the numbers. eLife 9 (2020)

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Publication Activity (10 Years)

Top Topics

Top Venues

Avi I Flamholz (Avi Flamholz)