Daniel Segrè

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 42

Top Topics

Escherichia Coli

Top Venues

Global change biology

Nature ecology & evolution

Applied and environmental microbiology

This page only lists publications with an associated author ORCID identifier.

Publications

Daniel Sher, Daniel Segrè, Michael J Follows
Quantitative principles of microbial metabolism shared across scales. Nature microbiology 9 (8) (2024)
Shira Givati, Elena Forchielli, Dikla Aharonovich, Noga Barak, Osnat Weissberg, Natalia Belkin, Eyal Rahav, Daniel Segrè, Daniel Sher
Diversity in the utilization of different molecular classes of dissolved organic matter by heterotrophic marine bacteria. Applied and environmental microbiology 90 (7) (2024)
Michael R Silverstein, Jennifer M Bhatnagar, Daniel Segrè
Metabolic complexity drives divergence in microbial communities. Nature ecology & evolution 8 (8) (2024)
Michael R Silverstein, Jennifer M Bhatnagar, Daniel Segrè
Metabolic complexity drives divergence in microbial communities. Nature ecology & evolution (2024)
Shira Givati, Elena Forchielli, Dikla Aharonovich, Noga Barak, Osnat Weissberg, Natalia Belkin, Eyal Rahav, Daniel Segrè, Daniel Sher
Diversity in the utilization of different molecular classes of dissolved organic matter by heterotrophic marine bacteria. Applied and environmental microbiology 90 (7) (2024)
Konrad Herbst, Taiyao Wang, Elena J Forchielli, Meghan Thommes, Ioannis Ch Paschalidis, Daniel Segrè
Multi-Attribute Subset Selection enables prediction of representative phenotypes across microbial populations. Communications biology 7 (1) (2024)
Shira Givati, Elena Forchielli, Dikla Aharonovich, Noga Barak, Osnat Weissberg, Natalia Belkin, Eyal Rahav, Daniel Segrè, Daniel Sher
Diversity in the utilization of different molecular classes of dissolved organic matter by heterotrophic marine bacteria. Applied and environmental microbiology 90 (7) (2024)
Michael R Silverstein, Jennifer M Bhatnagar, Daniel Segrè
Metabolic complexity drives divergence in microbial communities. Nature ecology & evolution (2024)
Shira Givati, Elena Forchielli, Dikla Aharonovich, Noga Barak, Osnat Weissberg, Natalia Belkin, Eyal Rahav, Daniel Segrè, Daniel Sher
Diversity in the utilization of different molecular classes of dissolved organic matter by heterotrophic marine bacteria. Applied and environmental microbiology (2024)
Devlin M Campbell, Justin Reimertz, Daniel Segrè, Juan Ignacio Fuxman Bass
Semi-Automatic Detection of Errors in Genome-Scale Metabolic Models. bioRxiv : the preprint server for biology (2024)
Daniel Sher, Daniel Segrè, Michael J Follows
Quantitative principles of microbial metabolism shared across scales. Nature microbiology 9 (8) (2024)
Konrad Herbst, Taiyao Wang, Elena J Forchielli, Meghan Thommes, Ioannis Ch Paschalidis, Daniel Segrè
Multi-Attribute Subset Selection enables prediction of representative phenotypes across microbial populations. Communications biology 7 (1) (2024)
Daniel Sher, Daniel Segrè, Michael J Follows
Quantitative principles of microbial metabolism shared across scales. Nature microbiology (2024)
Konrad Herbst, Taiyao Wang, Elena J Forchielli, Meghan Thommes, Ioannis Ch Paschalidis, Daniel Segrè
Multi-Attribute Subset Selection enables prediction of representative phenotypes across microbial populations. Communications biology 7 (1) (2024)
Michael R Silverstein, Daniel Segrè, Jennifer M Bhatnagar
Environmental microbiome engineering for the mitigation of climate change. Global change biology (2023)
Michael R Silverstein, Daniel Segrè, Jennifer M Bhatnagar
Environmental microbiome engineering for the mitigation of climate change. Global change biology 29 (8) (2023)
Michael R Silverstein, Jennifer M Bhatnagar, Daniel Segrè
Metabolic complexity drives divergence in microbial communities. bioRxiv : the preprint server for biology (2023)
Dileep Kishore, Gabriel Birzu, Zhenjun Hu, Charles DeLisi, Kirill S Korolev, Daniel Segrè
Inferring microbial co-occurrence networks from amplicon data: a systematic evaluation. mSystems (2023)
Charles Jo, David B Bernstein, Natalie Vaisman, Horacio M Frydman, Daniel Segrè
Construction and Modeling of a Coculture Microplate for Real-Time Measurement of Microbial Interactions. mSystems (2023)
Michael R Silverstein, Daniel Segrè, Jennifer M Bhatnagar
Environmental microbiome engineering for the mitigation of climate change. Global change biology (2023)
Michael R Silverstein, Daniel Segrè, Jennifer M Bhatnagar
Environmental microbiome engineering for the mitigation of climate change. Global change biology 29 (8) (2023)
Michael R Silverstein, Daniel Segrè, Jennifer M Bhatnagar
Environmental microbiome engineering for the mitigation of climate change. Global change biology 29 (8) (2023)
Mary Ann Moran, Elizabeth B Kujawinski, William F Schroer, Shady A Amin, Nicholas R Bates, Erin M Bertrand, Rogier Braakman, C Titus Brown, Markus W Covert, Scott C Doney, Sonya T Dyhrman, Arthur S Edison, A Murat Eren, Naomi M Levine, Liang Li, Avena Clara Ross, Mak A Saito, Alyson E Santoro, Daniel Segrè, Ashley Shade, Matthew B Sullivan, Assaf Vardi
Microbial metabolites in the marine carbon cycle. Nature microbiology 7 (4) (2022)
Elena Forchielli, Daniel Sher, Daniel Segrè
Metabolic Phenotyping of Marine Heterotrophs on Refactored Media Reveals Diverse Metabolic Adaptations and Lifestyle Strategies. mSystems 7 (4) (2022)
Luca Zoccarato, Daniel Sher, Takeshi Miki, Daniel Segrè, Hans-Peter Grossart
A comparative whole-genome approach identifies bacterial traits for marine microbial interactions. Communications biology 5 (1) (2022)
Alan R Pacheco, Charlie Pauvert, Dileep Kishore, Daniel Segrè
Toward FAIR Representations of Microbial Interactions. mSystems 7 (5) (2022)
Joshua E Goldford, Ashish B George, Avi I Flamholz, Daniel Segrè
Protein cost minimization promotes the emergence of coenzyme redundancy. Proceedings of the National Academy of Sciences of the United States of America 119 (14) (2022)
Devlin M Campbell, Alan R Pacheco, David B Bernstein, Daniel Segrè
Stoichiometric Modeling of Artificial String Chemistries Reveals Constraints on Metabolic Network Structure. Journal of molecular evolution 89 (7) (2021)
Dalit Roth Rosenberg, Markus Haber, Joshua E Goldford, Maya Lalzar, Dikla Aharonovich, Ashraf Al-Ashhab, Yoav Lehahn, Daniel Segrè, Laura Steindler, Daniel Sher
Particle-associated and free-living bacterial communities in an oligotrophic sea are affected by different environmental factors. Environmental microbiology 23 (8) (2021)
David B Bernstein, Snorre Sulheim, Eivind Almaas, Daniel Segrè
Addressing uncertainty in genome-scale metabolic model reconstruction and analysis. Genome biology 22 (1) (2021)
Ilija Dukovski, Djordje Bajić, Jeremy M Chacón, Michael Quintin, Jean C C Vila, Snorre Sulheim, Alan R Pacheco, David B Bernstein, William J Riehl, Kirill S Korolev, Alvaro Sanchez, William R Harcombe, Daniel Segrè
A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS). Nature protocols 16 (11) (2021)
Alan R Pacheco, Melisa L Osborne, Daniel Segrè
Non-additive microbial community responses to environmental complexity. Nature communications 12 (1) (2021)
Adrian Jinich, Benjamin Sanchez-Lengeling, Hongyi Ren, Joshua E Goldford, Elad Noor, Jacob N Sanders, Daniel Segrè, Alán Aspuru-Guzik
A thermodynamic atlas of carbon redox chemical space. Proceedings of the National Academy of Sciences of the United States of America 117 (52) (2020)
Doron Lancet, Daniel Segrè, Amit Kahana
Twenty Years of "Lipid World": A Fertile Partnership with David Deamer. Life (Basel, Switzerland) 9 (4) (2019)
Meghan Thommes, Taiyao Wang, Qi Zhao, Ioannis C Paschalidis, Daniel Segrè
Designing Metabolic Division of Labor in Microbial Communities. mSystems 4 (2) (2019)
Joshua E Goldford, Hyman Hartman, Robert Marsland, Daniel Segrè
Environmental boundary conditions for the origin of life converge to an organo-sulfur metabolism. Nature ecology & evolution 3 (12) (2019)
Antonella Succurro, Daniel Segrè, Oliver Ebenhöh
Emergent Subpopulation Behavior Uncovered with a Community Dynamic Metabolic Model of Escherichia coli Diauxic Growth. mSystems 4 (1) (2019)
David B Bernstein, Floyd E Dewhirst, Daniel Segrè
Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome. eLife 8 (2019)
Mustafa Saifuddin, Jennifer M Bhatnagar, Daniel Segrè, Adrien C Finzi
Microbial carbon use efficiency predicted from genome-scale metabolic models. Nature communications 10 (1) (2019)
Alan R Pacheco, Mauricio Moel, Daniel Segrè
Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems. Nature communications 10 (1) (2019)
Ben M Maoz, Anna Herland, Edward A Fitzgerald, Thomas Grevesse, Charles Vidoudez, Alan R Pacheco, Sean P Sheehy, Tae-Eun Park, Stephanie Dauth, Robert Mannix, Nikita Budnik, Kevin Shores, Alexander Cho, Janna C Nawroth, Daniel Segrè, Bogdan Budnik, Donald E Ingber, Kevin Kit Parker
A linked organ-on-chip model of the human neurovascular unit reveals the metabolic coupling of endothelial and neuronal cells. Nature biotechnology 36 (9) (2018)
Ali R Zomorrodi, Daniel Segrè
Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities. Nature communications 8 (1) (2017)