Barak A Cohen

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 41

Top Topics

Genome Wide Association

Embryonic Stem Cells

Gene Expression

Top Venues

Genome research

Nature genetics

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

James Lewis Shepherdson, David M Granas, Jie Li, Zara Shariff, Stephen P Plassmeyer, Alex S Holehouse, Michael A White, Barak A Cohen
Mutational scanning of CRX classifies clinical variants and reveals biochemical properties of the transcriptional effector domain. bioRxiv : the preprint server for biology (2024)
James Lewis Shepherdson, Ryan Z Friedman, Yiqiao Zheng, Chi Sun, Inez Y Oh, David M Granas, Barak A Cohen, Shiming Chen, Michael A White
Pathogenic variants in CRX have distinct cis -regulatory effects on enhancers and silencers in photoreceptors. Genome research 34 (2) (2024)
Clarice K Y Hong, Avinash Ramu, Siqi Zhao, Barak A Cohen
Effect of genomic and cellular environments on gene expression noise. Genome biology 25 (1) (2024)
James Lewis Shepherdson, Ryan Z Friedman, Yiqiao Zheng, Chi Sun, Inez Y Oh, David M Granas, Barak A Cohen, Shiming Chen, Michael A White
Pathogenic variants in CRX have distinct cis -regulatory effects on enhancers and silencers in photoreceptors. Genome research (2024)
James Lewis Shepherdson, Ryan Z Friedman, Yiqiao Zheng, Chi Sun, Inez Y Oh, David M Granas, Barak A Cohen, Shiming Chen, Michael A White
Pathogenic variants in CRX have distinct cis -regulatory effects on enhancers and silencers in photoreceptors. Genome research (2024)
James Lewis Shepherdson, Ryan Z Friedman, Yiqiao Zheng, Chi Sun, Inez Y Oh, David M Granas, Barak A Cohen, Shiming Chen, Michael A White
Pathogenic variants in CRX have distinct cis -regulatory effects on enhancers and silencers in photoreceptors. Genome research (2024)
James Lewis Shepherdson, Ryan Z Friedman, Yiqiao Zheng, Chi Sun, Inez Y Oh, David M Granas, Barak A Cohen, Shiming Chen, Michael A White
Pathogenic variants in CRX have distinct cis -regulatory effects on enhancers and silencers in photoreceptors. Genome research (2024)
Clarice K Y Hong, Avinash Ramu, Siqi Zhao, Barak A Cohen
Effect of genomic and cellular environments on gene expression noise. Genome biology 25 (1) (2024)
James Lewis Shepherdson, Ryan Z Friedman, Yiqiao Zheng, Chi Sun, Inez Y Oh, David M Granas, Barak A Cohen, Shiming Chen, Michael A White
Pathogenic variants in CRX have distinct cis -regulatory effects on enhancers and silencers in photoreceptors. Genome research 34 (2) (2024)
James Lewis Shepherdson, Ryan Z Friedman, Yiqiao Zheng, Chi Sun, Inez Y Oh, David M Granas, Barak A Cohen, Shiming Chen, Michael A White
Pathogenic variants in CRX have distinct cis -regulatory effects on enhancers and silencers in photoreceptors. Genome research 34 (2) (2024)
Clarice K Y Hong, Avinash Ramu, Siqi Zhao, Barak A Cohen
Effect of genomic and cellular environments on gene expression noise. Genome biology 25 (1) (2024)
James Lewis Shepherdson, Ryan Z Friedman, Yiqiao Zheng, Chi Sun, Inez Y Oh, David M Granas, Barak A Cohen, Shiming Chen, Michael A White
Pathogenic variants in CRX have distinct cis -regulatory effects on enhancers and silencers in photoreceptors. Genome research 34 (2) (2024)
James Lewis Shepherdson, Ryan Z Friedman, Yiqiao Zheng, Chi Sun, Inez Y Oh, David M Granas, Barak A Cohen, Shiming Chen, Michael A White
Pathogenic variants in CRX have distinct cis -regulatory effects on enhancers and silencers in photoreceptors. Genome research 34 (2) (2024)
Clarice K Y Hong, Avinash Ramu, Siqi Zhao, Barak A Cohen
Effect of genomic and cellular environments on gene expression noise. Genome biology 25 (1) (2024)
James Lewis Shepherdson, David M Granas, Jie Li, Zara Shariff, Stephen P Plassmeyer, Alex S Holehouse, Michael A White, Barak A Cohen
Mutational scanning of CRX classifies clinical variants and reveals biochemical properties of the transcriptional effector domain. bioRxiv : the preprint server for biology (2024)
Clarice K Y Hong, Avinash Ramu, Siqi Zhao, Barak A Cohen
Effect of genomic and cellular environments on gene expression noise. Genome biology 25 (1) (2024)
James Lewis Shepherdson, David M Granas, Jie Li, Zara Shariff, Stephen P Plassmeyer, Alex S Holehouse, Michael A White, Barak A Cohen
Mutational scanning of CRX classifies clinical variants and reveals biochemical properties of the transcriptional effector domain. bioRxiv : the preprint server for biology (2024)
James Lewis Shepherdson, David M Granas, Jie Li, Zara Shariff, Stephen P Plassmeyer, Alex S Holehouse, Michael A White, Barak A Cohen
Mutational scanning of CRX classifies clinical variants and reveals biochemical properties of the transcriptional effector domain. bioRxiv : the preprint server for biology (2024)
James Lewis Shepherdson, Ryan Z Friedman, Yiqiao Zheng, Chi Sun, Inez Y Oh, David M Granas, Barak A Cohen, Shiming Chen, Michael A White
Pathogenic variants in CRX have distinct cis -regulatory effects on enhancers and silencers in photoreceptors. Genome research 34 (2) (2024)
James Lewis Shepherdson, Ryan Z Friedman, Yiqiao Zheng, Chi Sun, Inez Y Oh, David M Granas, Barak A Cohen, Shiming Chen, Michael A White
Pathogenic variants in CRX have distinct cis -regulatory effects on enhancers and silencers in photoreceptors. Genome research 34 (2) (2024)
Siqi Zhao, Clarice Kit Yee Hong, Connie A Myers, David M Granas, Michael A White, Joseph C Corbo, Barak A Cohen
A single-cell massively parallel reporter assay detects cell-type-specific gene regulation. Nature genetics 55 (2) (2023)
James Lewis Shepherdson, Ryan Z Friedman, Yiqiao Zheng, Chi Sun, Inez Y Oh, David M Granas, Barak A Cohen, Shiming Chen, Michael A White
Pathogenic variants in CRX have distinct cis -regulatory effects on enhancers and silencers in photoreceptors. bioRxiv : the preprint server for biology (2023)
Siqi Zhao, Clarice Kit Yee Hong, Connie A Myers, David M Granas, Michael A White, Joseph C Corbo, Barak A Cohen
A single-cell massively parallel reporter assay detects cell-type-specific gene regulation. Nature genetics 55 (2) (2023)
Nicole B Rockweiler, Avinash Ramu, Liina Nagirnaja, Wing Hing Wong, Michiel J Noordam, Casey W Drubin, Ni Huang, Brian Miller, Ellen Z Todres, Katinka A Vigh-Conrad, Antonino Zito, Kerrin S Small, Kristin G Ardlie, Barak A Cohen, Donald F Conrad
The origins and functional effects of postzygotic mutations throughout the human life span. Science (New York, N.Y.) 380 (6641) (2023)
Siqi Zhao, Clarice Kit Yee Hong, Connie A Myers, David M Granas, Michael A White, Joseph C Corbo, Barak A Cohen
A single-cell massively parallel reporter assay detects cell-type-specific gene regulation. Nature genetics (2023)
Siqi Zhao, Clarice Kit Yee Hong, Connie A Myers, David M Granas, Michael A White, Joseph C Corbo, Barak A Cohen
A single-cell massively parallel reporter assay detects cell-type-specific gene regulation. Nature genetics 55 (2) (2023)
Tomas Lagunas, Stephen P Plassmeyer, Anthony D Fischer, Ryan Z Friedman, Michael A Rieger, Din Selmanovic, Simona Sarafinovska, Yvette K Sol, Michael J Kasper, Stuart B Fass, Alessandra F Aguilar Lucero, Joon-Yong An, Stephan J Sanders, Barak A Cohen, Joseph D Dougherty
A Cre-dependent massively parallel reporter assay allows for cell-type specific assessment of the functional effects of non-coding elements in vivo. Communications biology 6 (1) (2023)
Ryan Z Friedman, Avinash Ramu, Sara Lichtarge, Connie A Myers, David M Granas, Maria Gause, Joseph C Corbo, Barak A Cohen, Michael A White
Active learning of enhancer and silencer regulatory grammar in photoreceptors. bioRxiv : the preprint server for biology (2023)
Siqi Zhao, Clarice Kit Yee Hong, Connie A Myers, David M Granas, Michael A White, Joseph C Corbo, Barak A Cohen
A single-cell massively parallel reporter assay detects cell-type-specific gene regulation. Nature genetics 55 (2) (2023)
Siqi Zhao, Clarice Kit Yee Hong, Connie A Myers, David M Granas, Michael A White, Joseph C Corbo, Barak A Cohen
A single-cell massively parallel reporter assay detects cell-type-specific gene regulation. Nature genetics 55 (2) (2023)
Siqi Zhao, Clarice Kit Yee Hong, Connie A Myers, David M Granas, Michael A White, Joseph C Corbo, Barak A Cohen
A single-cell massively parallel reporter assay detects cell-type-specific gene regulation. Nature genetics 55 (2) (2023)
Siqi Zhao, Clarice Kit Yee Hong, Connie A Myers, David M Granas, Michael A White, Joseph C Corbo, Barak A Cohen
A single-cell massively parallel reporter assay detects cell-type-specific gene regulation. Nature genetics 55 (2) (2023)
Alan Y Du, Xiaoyu Zhuo, Vasavi Sundaram, Nicholas O Jensen, Hemangi G Chaudhari, Nancy L Saccone, Barak A Cohen, Ting Wang
Functional characterization of enhancer activity during a long terminal repeat's evolution. Genome research 32 (10) (2022)
Jeffrey L Hansen, Kaiser J Loell, Barak A Cohen
A test of the pioneer factor hypothesis using ectopic liver gene activation. eLife 11 (2022)
Jeffrey L Hansen, Barak A Cohen
A quantitative metric of pioneer activity reveals that HNF4A has stronger in vivo pioneer activity than FOXA1. Genome biology 23 (1) (2022)
Clarice Kit Yee Hong, Barak A Cohen
Genomic environments scale the activities of diverse core promoters. Genome research 32 (1) (2021)
Ryan Z Friedman, David M Granas, Connie A Myers, Joseph C Corbo, Barak A Cohen, Michael A White
Information content differentiates enhancers from silencers in mouse photoreceptors. eLife 10 (2021)
Dana M King, Clarice Kit Yee Hong, James Lewis Shepherdson, David M Granas, Brett B Maricque, Barak A Cohen
Synthetic and genomic regulatory elements reveal aspects of cis-regulatory grammar in mouse embryonic stem cells. eLife 9 (2020)
Kyle A Cottrell, Hemangi G Chaudhari, Barak A Cohen, Sergej Djuranovic
PTRE-seq reveals mechanism and interactions of RNA binding proteins and miRNAs. Nature communications 9 (1) (2018)
Brett B Maricque, Hemangi G Chaudhari, Barak A Cohen
A massively parallel reporter assay dissects the influence of chromatin structure on cis-regulatory activity. Nature biotechnology (2018)
Barak A Cohen
How should novelty be valued in science? eLife 6 (2017)