Ting Wang (T Wang)

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 72

Top Topics

Dna Methylation

Top Venues

Nature communications

Nature genetics

Genome research

This page only lists publications with an associated author ORCID identifier.

Publications

Yonghao Liang, Xuan Qu, Nakul M Shah, Ting Wang
Towards targeting transposable elements for cancer therapy. Nature reviews. Cancer 24 (2) (2024)
Yonghao Liang, Ting Wang
LINE1 mediates long-range DNA interactions. Nature genetics 56 (7) (2024)
Changxu Fan, Xiaoyun Xing, Samuel J H Murphy, Jennifer Poursine-Laurent, Heather Schmidt, Bijal A Parikh, Jeesang Yoon, Mayank N K Choudhary, Naresha Saligrama, Sytse J Piersma, Wayne M Yokoyama, Ting Wang
Cis-regulatory evolution of the recently expanded Ly49 gene family. Nature communications 15 (1) (2024)
Yonghao Liang, Xuan Qu, Nakul M Shah, Ting Wang
Towards targeting transposable elements for cancer therapy. Nature reviews. Cancer 24 (2) (2024)
Changxu Fan, Xiaoyun Xing, Samuel J H Murphy, Jennifer Poursine-Laurent, Heather Schmidt, Bijal A Parikh, Jeesang Yoon, Mayank N K Choudhary, Naresha Saligrama, Sytse J Piersma, Wayne M Yokoyama, Ting Wang
Cis-regulatory evolution of the recently expanded Ly49 gene family. Nature communications 15 (1) (2024)
Yonghao Liang, Ting Wang
LINE1 mediates long-range DNA interactions. Nature genetics 56 (7) (2024)
Alan Y Du, Jason D Chobirko, Xiaoyu Zhuo, Cédric Feschotte, Ting Wang
Regulatory transposable elements in the encyclopedia of DNA elements. Nature communications 15 (1) (2024)
Yi-Zhou Jiang, Ding Ma, Xi Jin, Yi Xiao, Ying Yu, Jinxiu Shi, Yi-Fan Zhou, Tong Fu, Cai-Jin Lin, Lei-Jie Dai, Cheng-Lin Liu, Shen Zhao, Guan-Hua Su, Wanwan Hou, Ya-Qing Liu, Qing-Wang Chen, Jingcheng Yang, Naixin Zhang, Wen-Juan Zhang, Wei Liu, Weigang Ge, Wen-Tao Yang, Chao You, Yajia Gu, Virginia Kaklamani, François Bertucci, Claire Verschraegen, Anneleen Daemen, Nakul M Shah, Ting Wang, Tiannan Guo, Le-Ming Shi, Charles M Perou, Yuanting Zheng, Wei Huang, Zhi-Ming Shao
Integrated multiomic profiling of breast cancer in the Chinese population reveals patient stratification and therapeutic vulnerabilities. Nature cancer 5 (4) (2024)
Nathan R Zemke, Ethan J Armand, Wenliang Wang, Seoyeon Lee, Jingtian Zhou, Yang Eric Li, Hanqing Liu, Wei Tian, Joseph R Nery, Rosa Gomez Castanon, Anna Bartlett, Julia K Osteen, Daofeng Li, Xiaoyu Zhuo, Vincent Xu, Lei Chang, Keyi Dong, Hannah S Indralingam, Jonathan A Rink, Yang Xie, Michael Miller, Fenna M Krienen, Qiangge Zhang, Naz Taskin, Jonathan Ting, Guoping Feng, Steven A McCarroll, Edward M Callaway, Ting Wang, Ed S Lein, M Margarita Behrens, Joseph R Ecker, Bing Ren
Author Correction: Conserved and divergent gene regulatory programs of the mammalian neocortex. Nature (2024)
Changxu Fan, Xiaoyun Xing, Samuel J H Murphy, Jennifer Poursine-Laurent, Heather Schmidt, Bijal A Parikh, Jeesang Yoon, Mayank N K Choudhary, Naresha Saligrama, Sytse J Piersma, Wayne M Yokoyama, Ting Wang
Cis-regulatory evolution of the recently expanded Ly49 gene family. Nature communications 15 (1) (2024)
Changxu Fan, Xiaoyun Xing, Samuel J H Murphy, Jennifer Poursine-Laurent, Heather Schmidt, Bijal A Parikh, Jeesang Yoon, Mayank N K Choudhary, Naresha Saligrama, Sytse J Piersma, Wayne M Yokoyama, Ting Wang
Cis-regulatory evolution of the recently expanded Ly49 gene family. Nature communications 15 (1) (2024)
Yonghao Liang, Ting Wang
LINE1 mediates long-range DNA interactions. Nature genetics 56 (7) (2024)
Jennifer A Foltz, Jennifer Tran, Pamela Wong, Changxu Fan, Evelyn Schmidt, Bryan Fisk, Michelle Becker-Hapak, David A Russler-Germain, Jeanette A I Johnson, Nancy D Marin, Celia C Cubitt, Patrick Pence, Joseph Rueve, Sushanth Pureti, Kimberly Hwang, Feng Gao, Alice Y Zhou, Mark Foster, Timothy Schappe, Lynne Marsala, Melissa M Berrien-Elliott, Amanda F Cashen, Jeffrey J Bednarski, Elana J Fertig, Malachi Griffith, Malachi Griffith, Ting Wang, Allegra A Petti, Todd A Fehniger
Cytokines drive the formation of memory-like NK cell subsets via epigenetic rewiring and transcriptional regulation. Science immunology 9 (96) (2024)
Hyo Sik Jang, Nakul M Shah, Ju Heon Maeng, Yonghao Liang, Noah L Basri, Jiaxin Ge, Xuan Qu, Tatenda Mahlokozera, Shin-Cheng Tzeng, Russell B Williams, Michael J Moore, Devi Annamalai, Justin Y Chen, Hyung Joo Lee, Patrick A DeSouza, Daofeng Li, Xiaoyun Xing, Albert H Kim, Ting Wang
Epigenetic therapy potentiates transposable element transcription to create tumor-enriched antigens in glioblastoma cells. Nature genetics (2024)
Yonghao Liang, Xuan Qu, Nakul M Shah, Ting Wang
Towards targeting transposable elements for cancer therapy. Nature reviews. Cancer (2024)
Changxu Fan, Xiaoyun Xing, Samuel J H Murphy, Jennifer Poursine-Laurent, Heather Schmidt, Bijal A Parikh, Jeesang Yoon, Mayank N K Choudhary, Naresha Saligrama, Sytse J Piersma, Wayne M Yokoyama, Ting Wang
Cis-regulatory evolution of the recently expanded Ly49 gene family. Nature communications 15 (1) (2024)
Yi-Zhou Jiang, Ding Ma, Xi Jin, Yi Xiao, Ying Yu, Jinxiu Shi, Yi-Fan Zhou, Tong Fu, Cai-Jin Lin, Lei-Jie Dai, Cheng-Lin Liu, Shen Zhao, Guan-Hua Su, Wanwan Hou, Ya-Qing Liu, Qing-Wang Chen, Jingcheng Yang, Naixin Zhang, Wen-Juan Zhang, Wei Liu, Weigang Ge, Wen-Tao Yang, Chao You, Yajia Gu, Virginia Kaklamani, François Bertucci, Claire Verschraegen, Anneleen Daemen, Nakul M Shah, Ting Wang, Tiannan Guo, Le-Ming Shi, Charles M Perou, Yuanting Zheng, Wei Huang, Zhi-Ming Shao
Integrated multiomic profiling of breast cancer in the Chinese population reveals patient stratification and therapeutic vulnerabilities. Nature cancer 5 (4) (2024)
Yonghao Liang, Xuan Qu, Nakul M Shah, Ting Wang
Towards targeting transposable elements for cancer therapy. Nature reviews. Cancer 24 (2) (2024)
Alan Y Du, Jason D Chobirko, Xiaoyu Zhuo, Cédric Feschotte, Ting Wang
Regulatory transposable elements in the encyclopedia of DNA elements. Nature communications 15 (1) (2024)
Yi-Zhou Jiang, Ding Ma, Xi Jin, Yi Xiao, Ying Yu, Jinxiu Shi, Yi-Fan Zhou, Tong Fu, Cai-Jin Lin, Lei-Jie Dai, Cheng-Lin Liu, Shen Zhao, Guan-Hua Su, Wanwan Hou, Ya-Qing Liu, Qing-Wang Chen, Jingcheng Yang, Naixin Zhang, Wen-Juan Zhang, Wei Liu, Weigang Ge, Wen-Tao Yang, Chao You, Yajia Gu, Virginia Kaklamani, François Bertucci, Claire Verschraegen, Anneleen Daemen, Nakul M Shah, Ting Wang, Tiannan Guo, Le-Ming Shi, Charles M Perou, Yuanting Zheng, Wei Huang, Zhi-Ming Shao
Integrated multiomic profiling of breast cancer in the Chinese population reveals patient stratification and therapeutic vulnerabilities. Nature cancer (2024)
Yonghao Liang, Ting Wang
LINE1 mediates long-range DNA interactions. Nature genetics (2024)
Jinbin Xu, Huifangjie L Farsad, Yiran Hou, Kia Barclay, Ben Anthony Lopez, Shinnosuke Yamada, Ibrahim Olabayode Saliu, Yiming Shi, William C Knight, Randell J Bateman, Tammie L S Benzinger, Jason J Yi, Qingyun Li, Ting Wang, Joel S Perlmutter, John C Morris, Guoyan Zhao
Human striatal glia differentially contribute to AD- and PD-specific neurodegeneration. Nature aging 3 (3) (2023)
Jisu Oh, Amy E Riek, Kevin T Bauerle, Adriana Dusso, Kyle P McNerney, Ruteja A Barve, Isra M Darwech, Jennifer E Sprague, Clare Moynihan, Rong M Zhang, Greta Kutz, Ting Wang, Xiaoyun Xing, Daofeng Li, Marguerite Mrad, Nicholas M Wigge, Esmeralda Castelblanco, Alejandro Collin, Monika Bambouskova, Richard D Head, Mark S Sands, Carlos Bernal-Mizrachi
Embryonic vitamin D deficiency programs hematopoietic stem cells to induce type 2 diabetes. Nature communications 14 (1) (2023)
Wen-Wei Liao, Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Glenn Hickey, Shuangjia Lu, Julian K Lucas, Jean Monlong, Haley J Abel, Silvia Buonaiuto, Xian H Chang, Haoyu Cheng, Justin Chu, Vincenza Colonna, Jordan M Eizenga, Xiaowen Feng, Christian Fischer, Robert S Fulton, Shilpa Garg, Cristian Groza, Andrea Guarracino, William T Harvey, Simon Heumos, Kerstin Howe, Miten Jain, Tsung-Yu Lu, Charles Markello, Fergal J Martin, Matthew W Mitchell, Katherine M Munson, Moses Njagi Mwaniki, Adam M Novak, Hugh E Olsen, Trevor Pesout, David Porubsky, Pjotr Prins, Jonas A Sibbesen, Jouni Sirén, Chad Tomlinson, Flavia Villani, Mitchell R Vollger, Lucinda L Antonacci-Fulton, Gunjan Baid, Carl A Baker, Anastasiya Belyaeva, Konstantinos Billis, Andrew Carroll, Pi-Chuan Chang, Sarah Cody, Daniel E Cook, Robert M Cook-Deegan, Omar E Cornejo, Mark E Diekhans, Peter Ebert, Susan Fairley, Olivier Fedrigo, Adam L Felsenfeld, Giulio Formenti, Adam Frankish, Yan Gao, Nanibaa' A Garrison, Carlos Garcia Giron, Richard E Green, Leanne Haggerty, Kendra Hoekzema, Thibaut Hourlier, Hanlee P Ji, Eimear E Kenny, Barbara A Koenig, Alexey Kolesnikov, Jan O Korbel, Jennifer Kordosky, Sergey Koren, HoJoon Lee, Alexandra P Lewis, Hugo Magalhães, Santiago Marco-Sola, Pierre Marijon, Ann McCartney, Jennifer McDaniel, Jacquelyn Mountcastle, Maria Nattestad, Sergey Nurk, Nathan D Olson, Alice B Popejoy, Daniela Puiu, Mikko Rautiainen, Allison A Regier, Arang Rhie, Samuel Sacco, Ashley D Sanders, Valerie A Schneider, Baergen I Schultz, Kishwar Shafin, Michael W Smith, Heidi J Sofia, Ahmad N Abou Tayoun, Françoise Thibaud-Nissen, Francesca Floriana Tricomi, Justin Wagner, Brian P Walenz, Jonathan M D Wood, Aleksey V Zimin, Guillaume Bourque, Mark J P Chaisson, Paul Flicek, Adam M Phillippy, Justin M Zook, Evan E Eichler, David Haussler, Ting Wang, Erich D Jarvis, Karen H Miga, Erik P Garrison, Tobias Marschall, Ira M Hall, Heng Li, Benedict Paten
A draft human pangenome reference. Nature 617 (7960) (2023)
Mayank N K Choudhary, Kara Quaid, Xiaoyun Xing, Heather Schmidt, Ting Wang
Widespread contribution of transposable elements to the rewiring of mammalian 3D genomes. Nature communications 14 (1) (2023)
Jinbin Xu, Huifangjie L Farsad, Yiran Hou, Kia Barclay, Ben Anthony Lopez, Shinnosuke Yamada, Ibrahim Olabayode Saliu, Yiming Shi, William C Knight, Randell J Bateman, Tammie L S Benzinger, Jason J Yi, Qingyun Li, Ting Wang, Joel S Perlmutter, John C Morris, Guoyan Zhao
Human striatal glia differentially contribute to AD- and PD-specific neurodegeneration. Nature aging 3 (3) (2023)
Nathan R Zemke, Ethan J Armand, Wenliang Wang, Seoyeon Lee, Jingtian Zhou, Yang Eric Li, Hanqing Liu, Wei Tian, Joseph R Nery, Rosa Gomez Castanon, Anna Bartlett, Julia K Osteen, Daofeng Li, Xiaoyu Zhuo, Vincent Xu, Lei Chang, Keyi Dong, Hannah S Indralingam, Jonathan A Rink, Yang Xie, Michael Miller, Fenna M Krienen, Qiangge Zhang, Naz Taskin, Jonathan Ting, Guoping Feng, Steven A McCarroll, Edward M Callaway, Ting Wang, Ed S Lein, M Margarita Behrens, Joseph R Ecker, Bing Ren
Conserved and divergent gene regulatory programs of the mammalian neocortex. Nature 624 (7991) (2023)
Mayank N K Choudhary, Kara Quaid, Xiaoyun Xing, Heather Schmidt, Ting Wang
Widespread contribution of transposable elements to the rewiring of mammalian 3D genomes. Nature communications 14 (1) (2023)
Wen-Wei Liao, Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Glenn Hickey, Shuangjia Lu, Julian K Lucas, Jean Monlong, Haley J Abel, Silvia Buonaiuto, Xian H Chang, Haoyu Cheng, Justin Chu, Vincenza Colonna, Jordan M Eizenga, Xiaowen Feng, Christian Fischer, Robert S Fulton, Shilpa Garg, Cristian Groza, Andrea Guarracino, William T Harvey, Simon Heumos, Kerstin Howe, Miten Jain, Tsung-Yu Lu, Charles Markello, Fergal J Martin, Matthew W Mitchell, Katherine M Munson, Moses Njagi Mwaniki, Adam M Novak, Hugh E Olsen, Trevor Pesout, David Porubsky, Pjotr Prins, Jonas A Sibbesen, Jouni Sirén, Chad Tomlinson, Flavia Villani, Mitchell R Vollger, Lucinda L Antonacci-Fulton, Gunjan Baid, Carl A Baker, Anastasiya Belyaeva, Konstantinos Billis, Andrew Carroll, Pi-Chuan Chang, Sarah Cody, Daniel E Cook, Robert M Cook-Deegan, Omar E Cornejo, Mark E Diekhans, Peter Ebert, Susan Fairley, Olivier Fedrigo, Adam L Felsenfeld, Giulio Formenti, Adam Frankish, Yan Gao, Nanibaa' A Garrison, Carlos Garcia Giron, Richard E Green, Leanne Haggerty, Kendra Hoekzema, Thibaut Hourlier, Hanlee P Ji, Eimear E Kenny, Barbara A Koenig, Alexey Kolesnikov, Jan O Korbel, Jennifer Kordosky, Sergey Koren, HoJoon Lee, Alexandra P Lewis, Hugo Magalhães, Santiago Marco-Sola, Pierre Marijon, Ann McCartney, Jennifer McDaniel, Jacquelyn Mountcastle, Maria Nattestad, Sergey Nurk, Nathan D Olson, Alice B Popejoy, Daniela Puiu, Mikko Rautiainen, Allison A Regier, Arang Rhie, Samuel Sacco, Ashley D Sanders, Valerie A Schneider, Baergen I Schultz, Kishwar Shafin, Michael W Smith, Heidi J Sofia, Ahmad N Abou Tayoun, Françoise Thibaud-Nissen, Francesca Floriana Tricomi, Justin Wagner, Brian P Walenz, Jonathan M D Wood, Aleksey V Zimin, Guillaume Bourque, Mark J P Chaisson, Paul Flicek, Adam M Phillippy, Justin M Zook, Evan E Eichler, David Haussler, Ting Wang, Erich D Jarvis, Karen H Miga, Erik P Garrison, Tobias Marschall, Ira M Hall, Heng Li, Benedict Paten
A draft human pangenome reference. Nature 617 (7960) (2023)
Nakul M Shah, H Josh Jang, Yonghao Liang, Ju Heon Maeng, Shin-Cheng Tzeng, Angela Wu, Noah L Basri, Xuan Qu, Changxu Fan, Amy Li, Benjamin Katz, Daofeng Li, Xiaoyun Xing, Bradley S Evans, Ting Wang
Pan-cancer analysis identifies tumor-specific antigens derived from transposable elements. Nature genetics (2023)
Seongmi K Russell, Jessica K Harrison, Benjamin S Olson, Hyung Joo Lee, Valerie P O'Brien, Xiaoyun Xing, Jonathan Livny, Lu Yu, Elisha D O Roberson, Rajdeep Bomjan, Changxu Fan, Marina Sha, Shady Estfanous, Amal O Amer, Marco Colonna, Thaddeus S Stappenbeck, Ting Wang, Thomas J Hannan, Scott J Hultgren
Uropathogenic Escherichia coli infection-induced epithelial trained immunity impacts urinary tract disease outcome. Nature microbiology (2023)
Mayank N K Choudhary, Kara Quaid, Xiaoyun Xing, Heather Schmidt, Ting Wang
Widespread contribution of transposable elements to the rewiring of mammalian 3D genomes. Nature communications 14 (1) (2023)
Wen-Wei Liao, Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Glenn Hickey, Shuangjia Lu, Julian K Lucas, Jean Monlong, Haley J Abel, Silvia Buonaiuto, Xian H Chang, Haoyu Cheng, Justin Chu, Vincenza Colonna, Jordan M Eizenga, Xiaowen Feng, Christian Fischer, Robert S Fulton, Shilpa Garg, Cristian Groza, Andrea Guarracino, William T Harvey, Simon Heumos, Kerstin Howe, Miten Jain, Tsung-Yu Lu, Charles Markello, Fergal J Martin, Matthew W Mitchell, Katherine M Munson, Moses Njagi Mwaniki, Adam M Novak, Hugh E Olsen, Trevor Pesout, David Porubsky, Pjotr Prins, Jonas A Sibbesen, Jouni Sirén, Chad Tomlinson, Flavia Villani, Mitchell R Vollger, Lucinda L Antonacci-Fulton, Gunjan Baid, Carl A Baker, Anastasiya Belyaeva, Konstantinos Billis, Andrew Carroll, Pi-Chuan Chang, Sarah Cody, Daniel E Cook, Robert M Cook-Deegan, Omar E Cornejo, Mark E Diekhans, Peter Ebert, Susan Fairley, Olivier Fedrigo, Adam L Felsenfeld, Giulio Formenti, Adam Frankish, Yan Gao, Nanibaa' A Garrison, Carlos Garcia Giron, Richard E Green, Leanne Haggerty, Kendra Hoekzema, Thibaut Hourlier, Hanlee P Ji, Eimear E Kenny, Barbara A Koenig, Alexey Kolesnikov, Jan O Korbel, Jennifer Kordosky, Sergey Koren, HoJoon Lee, Alexandra P Lewis, Hugo Magalhães, Santiago Marco-Sola, Pierre Marijon, Ann McCartney, Jennifer McDaniel, Jacquelyn Mountcastle, Maria Nattestad, Sergey Nurk, Nathan D Olson, Alice B Popejoy, Daniela Puiu, Mikko Rautiainen, Allison A Regier, Arang Rhie, Samuel Sacco, Ashley D Sanders, Valerie A Schneider, Baergen I Schultz, Kishwar Shafin, Michael W Smith, Heidi J Sofia, Ahmad N Abou Tayoun, Françoise Thibaud-Nissen, Francesca Floriana Tricomi, Justin Wagner, Brian P Walenz, Jonathan M D Wood, Aleksey V Zimin, Guillaume Bourque, Mark J P Chaisson, Paul Flicek, Adam M Phillippy, Justin M Zook, Evan E Eichler, David Haussler, Ting Wang, Erich D Jarvis, Karen H Miga, Erik P Garrison, Tobias Marschall, Ira M Hall, Heng Li, Benedict Paten
A draft human pangenome reference. Nature 617 (7960) (2023)
Mayank N K Choudhary, Kara Quaid, Xiaoyun Xing, Heather Schmidt, Ting Wang
Widespread contribution of transposable elements to the rewiring of mammalian 3D genomes. Nature communications 14 (1) (2023)
Mayank N K Choudhary, Kara Quaid, Xiaoyun Xing, Heather Schmidt, Ting Wang
Widespread contribution of transposable elements to the rewiring of mammalian 3D genomes. Nature communications 14 (1) (2023)
Wen-Wei Liao, Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Glenn Hickey, Shuangjia Lu, Julian K Lucas, Jean Monlong, Haley J Abel, Silvia Buonaiuto, Xian H Chang, Haoyu Cheng, Justin Chu, Vincenza Colonna, Jordan M Eizenga, Xiaowen Feng, Christian Fischer, Robert S Fulton, Shilpa Garg, Cristian Groza, Andrea Guarracino, William T Harvey, Simon Heumos, Kerstin Howe, Miten Jain, Tsung-Yu Lu, Charles Markello, Fergal J Martin, Matthew W Mitchell, Katherine M Munson, Moses Njagi Mwaniki, Adam M Novak, Hugh E Olsen, Trevor Pesout, David Porubsky, Pjotr Prins, Jonas A Sibbesen, Jouni Sirén, Chad Tomlinson, Flavia Villani, Mitchell R Vollger, Lucinda L Antonacci-Fulton, Gunjan Baid, Carl A Baker, Anastasiya Belyaeva, Konstantinos Billis, Andrew Carroll, Pi-Chuan Chang, Sarah Cody, Daniel E Cook, Robert M Cook-Deegan, Omar E Cornejo, Mark E Diekhans, Peter Ebert, Susan Fairley, Olivier Fedrigo, Adam L Felsenfeld, Giulio Formenti, Adam Frankish, Yan Gao, Nanibaa' A Garrison, Carlos Garcia Giron, Richard E Green, Leanne Haggerty, Kendra Hoekzema, Thibaut Hourlier, Hanlee P Ji, Eimear E Kenny, Barbara A Koenig, Alexey Kolesnikov, Jan O Korbel, Jennifer Kordosky, Sergey Koren, HoJoon Lee, Alexandra P Lewis, Hugo Magalhães, Santiago Marco-Sola, Pierre Marijon, Ann McCartney, Jennifer McDaniel, Jacquelyn Mountcastle, Maria Nattestad, Sergey Nurk, Nathan D Olson, Alice B Popejoy, Daniela Puiu, Mikko Rautiainen, Allison A Regier, Arang Rhie, Samuel Sacco, Ashley D Sanders, Valerie A Schneider, Baergen I Schultz, Kishwar Shafin, Michael W Smith, Heidi J Sofia, Ahmad N Abou Tayoun, Françoise Thibaud-Nissen, Francesca Floriana Tricomi, Justin Wagner, Brian P Walenz, Jonathan M D Wood, Aleksey V Zimin, Guillaume Bourque, Mark J P Chaisson, Paul Flicek, Adam M Phillippy, Justin M Zook, Evan E Eichler, David Haussler, Ting Wang, Erich D Jarvis, Karen H Miga, Erik P Garrison, Tobias Marschall, Ira M Hall, Heng Li, Benedict Paten
A draft human pangenome reference. Nature 617 (7960) (2023)
Heather A Lawson, Yonghao Liang, Ting Wang
Transposable elements in mammalian chromatin organization. Nature reviews. Genetics (2023)
Xiaoyu Zhuo, Silas Hsu, Deepak Purushotham, Prashant K Kuntala, Jessica K Harrison, Alan Y Du, Samuel Chen, Daofeng Li, Ting Wang
Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser. Genome research (2023)
Ju Heon Maeng, Hyo Sik Jang, Alan Y Du, Shin-Cheng Tzeng, Ting Wang
Using long-read CAGE sequencing to profile cryptic-promoter-derived transcripts and their contribution to the immunopeptidome. Genome research (2023)
Jinbin Xu, Huifangjie L Farsad, Yiran Hou, Kia Barclay, Ben Anthony Lopez, Shinnosuke Yamada, Ibrahim Olabayode Saliu, Yiming Shi, William C Knight, Randell J Bateman, Tammie L S Benzinger, Jason J Yi, Qingyun Li, Ting Wang, Joel S Perlmutter, John C Morris, Guoyan Zhao
Human striatal glia differentially contribute to AD- and PD-specific neurodegeneration. Nature aging 3 (3) (2023)
Jinbin Xu, Huifangjie L Farsad, Yiran Hou, Kia Barclay, Ben Anthony Lopez, Shinnosuke Yamada, Ibrahim Olabayode Saliu, Yiming Shi, William C Knight, Randell J Bateman, Tammie L S Benzinger, Jason J Yi, Qingyun Li, Ting Wang, Joel S Perlmutter, John C Morris, Guoyan Zhao
Human striatal glia differentially contribute to AD- and PD-specific neurodegeneration. Nature aging 3 (3) (2023)
Maria Cimpean, Molly P Keppel, Anastasiia Gainullina, Changxu Fan, Hyogon Sohn, Nathan C Schedler, Amanda Swain, Ana Kolicheski, Hannah Shapiro, Howard A Young, Ting Wang, Maxim N Artyomov, Megan Anne Cooper
IL-15 Priming Alters IFN-γ Regulation in Murine NK Cells. Journal of immunology (Baltimore, Md. : 1950) (2023)
Surag Nair, Arjun Barrett, Daofeng Li, Brian J Raney, Brian T Lee, Peter Kerpedjiev, Vivekanandan Ramalingam, Anusri Pampari, Fritz Lekschas, Ting Wang, Maximilian Haeussler, Anshul Kundaje
The dynseq browser track shows context-specific features at nucleotide resolution. Nature genetics 54 (11) (2022)
Alan Y Du, Xiaoyu Zhuo, Vasavi Sundaram, Nicholas O Jensen, Hemangi G Chaudhari, Nancy L Saccone, Barak A Cohen, Ting Wang
Functional characterization of enhancer activity during a long terminal repeat's evolution. Genome research 32 (10) (2022)
Daofeng Li, Deepak Purushotham, Jessica K Harrison, Silas Hsu, Xiaoyu Zhuo, Changxu Fan, Shane Liu, Vincent Xu, Samuel Chen, Jason Xu, Shinyi Ouyang, Angela S Wu, Ting Wang
WashU Epigenome Browser update 2022. Nucleic acids research (2022)
Andrew J Modzelewski, Johnny Gan Chong, Ting Wang, Lin He
Mammalian genome innovation through transposon domestication. Nature cell biology 24 (9) (2022)
Erich D Jarvis, Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Jonathan M D Wood, Alan Tracey, Françoise Thibaud-Nissen, Mitchell R Vollger, David Porubsky, Haoyu Cheng, Mobin Asri, Glennis A Logsdon, Paolo Carnevali, Mark J P Chaisson, Chen-Shan Chin, Sarah Cody, Joanna Collins, Peter Ebert, Merly Escalona, Olivier Fedrigo, Robert S Fulton, Lucinda L Fulton, Shilpa Garg, Jennifer L Gerton, Jay Ghurye, Anastasiya Granat, Richard E Green, William Harvey, Patrick Hasenfeld, Alex Hastie, Marina Haukness, Erich B Jaeger, Miten Jain, Melanie Kirsche, Mikhail Kolmogorov, Jan O Korbel, Sergey Koren, Jonas Korlach, Joyce Lee, Daofeng Li, Tina Lindsay, Julian Lucas, Feng Luo, Tobias Marschall, Matthew W Mitchell, Jennifer McDaniel, Fan Nie, Hugh E Olsen, Nathan D Olson, Trevor Pesout, Tamara Potapova, Daniela Puiu, Allison Regier, Jue Ruan, Steven L Salzberg, Ashley D Sanders, Michael C Schatz, Anthony Schmitt, Valerie A Schneider, Siddarth Selvaraj, Kishwar Shafin, Alaina Shumate, Nathan O Stitziel, Catherine Stober, James Torrance, Justin Wagner, Jian-Xin Wang, Aaron Wenger, Chuan-Le Xiao, Aleksey V Zimin, Guo-Jie Zhang, Ting Wang, Heng Li, Erik Garrison, David Haussler, Ira Hall, Justin M Zook, Evan E Eichler, Adam M Phillippy, Benedict Paten, Kerstin Howe, Karen H Miga, null null
Semi-automated assembly of high-quality diploid human reference genomes. Nature 611 (7936) (2022)
Hyung Joo Lee, Yiran Hou, Ju Heon Maeng, Nakul M Shah, Yujie Chen, Heather A Lawson, Hongbo Yang, Feng Yue, Ting Wang
Epigenomic analysis reveals prevalent contribution of transposable elements to cis -regulatory elements, tissue-specific expression, and alternative promoters in zebrafish. Genome research 32 (7) (2022)
Ting Wang, Lucinda Antonacci-Fulton, Kerstin Howe, Heather A Lawson, Julian K Lucas, Adam M Phillippy, Alice B Popejoy, Mobin Asri, Caryn Carson, Mark J P Chaisson, Xian Chang, Robert Cook-Deegan, Adam L Felsenfeld, Robert S Fulton, Erik P Garrison, Nanibaa' A Garrison, Tina A Graves-Lindsay, Hanlee P Ji, Eimear E Kenny, Barbara A Koenig, Daofeng Li, Tobias Marschall, Joshua F McMichael, Adam M Novak, Deepak Purushotham, Valerie A Schneider, Baergen I Schultz, Michael W Smith, Heidi J Sofia, Tsachy Weissman, Paul Flicek, Heng Li, Karen H Miga, Benedict Paten, Erich D Jarvis, Ira M Hall, Evan E Eichler, David Haussler, null null
The Human Pangenome Project: a global resource to map genomic diversity. Nature 604 (7906) (2022)
Daofeng Li, Jessica K Harrison, Deepak Purushotham, Ting Wang
Exploring genomic data coupled with 3D chromatin structures using the WashU Epigenome Browser. Nature methods 19 (8) (2022)
Jennifer A Karlow, Siddhartha Devarakonda, Xiaoyun Xing, Hyo Sik Jang, Ramaswamy Govindan, Mark A Watson, Ting Wang
Developmental Pathways Are Epigenetically Reprogrammed during Lung Cancer Brain Metastasis. Cancer research 82 (15) (2022)
Jennifer A Karlow, Benpeng Miao, Xiaoyun Xing, Ting Wang, Bo Zhang
Common DNA methylation dynamics in endometriod adenocarcinoma and glioblastoma suggest universal epigenomic alterations in tumorigenesis. Communications biology 4 (1) (2021)
Xin Huang, Kyoung-Mi Park, Paul Gontarz, Bo Zhang, Joshua Pan, Zachary McKenzie, Laura A Fischer, Chen Dong, Sabine Dietmann, Xiaoyun Xing, Pavel V Shliaha, Jihong Yang, Dan Li, Junjun Ding, Tenzin Lungjangwa, Maya Mitalipova, Shafqat A Khan, Sumeth Imsoonthornruksa, Nicholas O Jensen, Ting Wang, Cigall Kadoch, Rudolf Jaenisch, Jianlong Wang, Thorold W Theunissen
OCT4 cooperates with distinct ATP-dependent chromatin remodelers in naïve and primed pluripotent states in human. Nature communications 12 (1) (2021)
Hyo Sik Jang, Yujie Chen, Jiaxin Ge, Alicia N Wilkening, Yiran Hou, Hyung Joo Lee, You Rim Choi, Rebecca F Lowdon, Xiaoyun Xing, Daofeng Li, Charles K Kaufman, Stephen L Johnson, Ting Wang
Epigenetic dynamics shaping melanophore and iridophore cell fate in zebrafish. Genome biology 22 (1) (2021)
Paul Gontarz, Shuhua Fu, Xiaoyun Xing, Shaopeng Liu, Benpeng Miao, Viktoriia Bazylianska, Akhil Sharma, Pamela Madden, Kitra Cates, Andrew Yoo, Anna Moszczynska, Ting Wang, Bo Zhang
Comparison of differential accessibility analysis strategies for ATAC-seq data. Scientific reports 10 (1) (2020)
Yu He, Hyo Sik Jang, Xiaoyun Xing, Daofeng Li, Michael J Vasek, Joseph D Dougherty, Ting Wang
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