Brenda Marilyn Rubenstein (Brenda Rubenstein, Brenda M Rubenstein)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 32

Top Topics

Protein Protein

Machine Learning

Molecular Dynamics Simulations

Top Venues

Nature communications

The journal of physical chemistry. A

Chemphyschem : a European journal of chemical physics and physical chemistry

PLoS computational biology

This page only lists publications with an associated author ORCID identifier.

Publications

Sushree Jagriti Sahoo, Qimen Xu, Xiangyun Lei, Daniel Staros, Gopal R Iyer, Brenda Marilyn Rubenstein, Phanish Suryanarayana, Andrew James Medford
Self-Consistent Convolutional Density Functional Approximations: Application to Adsorption at Metal Surfaces. Chemphyschem : a European journal of chemical physics and physical chemistry 25 (10) (2024)
Gabriel Monteiro da Silva, Jennifer Y Cui, David C Dalgarno, George P Lisi, Brenda Marilyn Rubenstein
High-throughput prediction of protein conformational distributions with subsampled AlphaFold2. Nature communications 15 (1) (2024)
Gabriel Monteiro da Silva, Jennifer Y Cui, David C Dalgarno, George P Lisi, Brenda Marilyn Rubenstein
High-throughput prediction of protein conformational distributions with subsampled AlphaFold2. Nature communications 15 (1) (2024)
Gabriel Monteiro da Silva, Jennifer Y Cui, David C Dalgarno, George P Lisi, Brenda Marilyn Rubenstein
Author Correction: High-throughput prediction of protein conformational distributions with subsampled AlphaFold2. Nature communications 15 (1) (2024)
Gopal R Iyer, Noah Whelpley, Juha Tiihonen, Paul R C Kent, Jaron T Krogel, Brenda Marilyn Rubenstein
Force-Free Identification of Minimum-Energy Pathways and Transition States for Stochastic Electronic Structure Theories. Journal of chemical theory and computation (2024)
Sushree Jagriti Sahoo, Qimen Xu, Xiangyun Lei, Daniel Staros, Gopal R Iyer, Brenda Marilyn Rubenstein, Phanish Suryanarayana, Andrew James Medford
Self-Consistent Convolutional Density Functional Approximations: Application to Adsorption at Metal Surfaces. Chemphyschem : a European journal of chemical physics and physical chemistry (2024)
Gabriel Monteiro da Silva, Jennifer Y Cui, David C Dalgarno, George P Lisi, Brenda Marilyn Rubenstein
High-throughput prediction of protein conformational distributions with subsampled AlphaFold2. Nature communications 15 (1) (2024)
Edgar Josué Landinez Borda, Kenneth O Berard, Annette Lopez, Brenda Marilyn Rubenstein
Gaussian processes for finite size extrapolation of many-body simulations. Faraday discussions (2024)
Gabriel Monteiro da Silva, Jennifer Y Cui, David C Dalgarno, George P Lisi, Brenda Marilyn Rubenstein
High-throughput prediction of protein conformational distributions with subsampled AlphaFold2. Nature communications 15 (1) (2024)
Gabriel Monteiro da Silva, Jennifer Y Cui, David C Dalgarno, George P Lisi, Brenda Marilyn Rubenstein
Author Correction: High-throughput prediction of protein conformational distributions with subsampled AlphaFold2. Nature communications 15 (1) (2024)
Gabriel Monteiro da Silva, Jennifer Y Cui, David C Dalgarno, George P Lisi, Brenda Marilyn Rubenstein
High-throughput prediction of protein conformational distributions with subsampled AlphaFold2. Nature communications 15 (1) (2024)
Gabriel Monteiro da Silva, Jennifer Y Cui, David C Dalgarno, George P Lisi, Brenda Marilyn Rubenstein
High-throughput prediction of protein conformational distributions with subsampled AlphaFold2. Nature communications 15 (1) (2024)
Selahaddin Gumus, Dana Biechele-Speziale, Katherine E Manz, Kurt D Pennell, Brenda Marilyn Rubenstein, Jacob K Rosenstein
Repurposing Waste Chemicals for Sustainable and Durable Molecular Data Storage. ACS omega 9 (18) (2024)
Selahaddin Gumus, Dana Biechele-Speziale, Katherine E Manz, Kurt D Pennell, Brenda Marilyn Rubenstein, Jacob K Rosenstein
Repurposing Waste Chemicals for Sustainable and Durable Molecular Data Storage. ACS omega 9 (18) (2024)
Ahmed A Agiza, Kady Oakley, Jacob K Rosenstein, Brenda Marilyn Rubenstein, Eunsuk Kim, Marc Riedel, Sherief Reda
Digital circuits and neural networks based on acid-base chemistry implemented by robotic fluid handling. Nature communications 14 (1) (2023)
Carlos R Baiz, Robert F Berger, Kelling J Donald, Julio C de Paula, Stephen D Fried, Brenda Marilyn Rubenstein, Grace Y Stokes, Kana Takematsu, Casey H Londergan
Lowering Activation Barriers to Success in Physical Chemistry (LABSIP): A Community Project. The journal of physical chemistry. A 128 (1) (2023)
Carlos R Baiz, Robert F Berger, Kelling J Donald, Julio C de Paula, Stephen D Fried, Brenda Marilyn Rubenstein, Grace Y Stokes, Kana Takematsu, Casey H Londergan
Lowering Activation Barriers to Success in Physical Chemistry (LABSIP): A Community Project. The journal of physical chemistry. A 128 (1) (2023)
Mengqi Shen, Amir Afshar, Nathan Sinai, Huanqin Guan, Cooro Harris, Brenda Marilyn Rubenstein, Shouheng Sun
Enabling Pd Catalytic Selectivity via Engineering Intermetallic Core@Shell Structure. ACS nano 18 (1) (2023)
Gabriel Monteiro da Silva, Jennifer Y Cui, David C Dalgarno, George P Lisi, Brenda Marilyn Rubenstein
Predicting Relative Populations of Protein Conformations without a Physics Engine Using AlphaFold2. bioRxiv : the preprint server for biology (2023)
Ahmed A Agiza, Kady Oakley, Jacob K Rosenstein, Brenda Marilyn Rubenstein, Eunsuk Kim, Marc Riedel, Sherief Reda
Digital circuits and neural networks based on acid-base chemistry implemented by robotic fluid handling. Nature communications 14 (1) (2023)
Carlos R Baiz, Robert F Berger, Kelling J Donald, Julio C de Paula, Stephen D Fried, Brenda Marilyn Rubenstein, Grace Y Stokes, Kana Takematsu, Casey H Londergan
Lowering Activation Barriers to Success in Physical Chemistry (LABSIP): A Community Project. The journal of physical chemistry. A 128 (1) (2023)
Mengqi Shen, Amir Afshar, Nathan Sinai, Huanqin Guan, Cooro Harris, Brenda Marilyn Rubenstein, Shouheng Sun
Enabling Pd Catalytic Selectivity via Engineering Intermetallic Core@Shell Structure. ACS nano (2023)
Carlos R Baiz, Robert F Berger, Kelling J Donald, Julio C de Paula, Stephen D Fried, Brenda Marilyn Rubenstein, Grace Y Stokes, Kana Takematsu, Casey H Londergan
Lowering Activation Barriers to Success in Physical Chemistry (LABSIP): A Community Project. The journal of physical chemistry. A (2023)
Wai Shing Tang, Gabriel Monteiro da Silva, Henry Kirveslahti, Erin Skeens, Bibo Feng, Timothy Sudijono, Kevin K Yang, Sayan Mukherjee, Brenda Marilyn Rubenstein, Lorin Crawford
A topological data analytic approach for discovering biophysical signatures in protein dynamics. PLoS computational biology 18 (5) (2022)
Cancan Huang, Brenda Marilyn Rubenstein
Machine Learning Diffusion Monte Carlo Forces. The journal of physical chemistry. A 127 (1) (2022)
Gabriel Monteiro da Silva, Jordan Yang, Bunlong Leang, Jessie Huang, Daniel M Weinreich, Brenda Marilyn Rubenstein
Covalent docking and molecular dynamics simulations reveal the specificity-shifting mutations Ala237Arg and Ala237Lys in TEM beta-lactamase. PLoS computational biology 18 (6) (2022)
Cancan Huang, Brenda Marilyn Rubenstein
Machine Learning Diffusion Monte Carlo Forces. The journal of physical chemistry. A (2022)
Gopal R Iyer, Brenda Marilyn Rubenstein
Finite-Size Error Cancellation in Diffusion Monte Carlo Calculations of Surface Chemistry. The journal of physical chemistry. A 126 (28) (2022)
Shunji Li, Jagdish Suresh Patel, Jordan Yang, Angela Marie Crabtree, Brenda Marilyn Rubenstein, Peik Karl Lund-Andersen, Frederick Marty Ytreberg, Paul Andrew Rowley
Defining the HIV Capsid Binding Site of Nucleoporin 153. mSphere 7 (5) (2022)
Christopher E Arcadia, Eamonn Kennedy, Joseph Geiser, Amanda Dombroski, Kady Oakley, Shui-Ling Chen, Leonard Sprague, Mustafa Ozmen, Jason Sello, Peter M Weber, Sherief Reda, Christopher Rose, Eunsuk Kim, Brenda Marilyn Rubenstein, Jacob K Rosenstein
Multicomponent molecular memory. Nature communications 11 (1) (2020)
Jordan Yang, Nandita Naik, Jagdish Suresh Patel, Christopher S Wylie, Wenze Gu, Jessie Huang, F Marty Ytreberg, Mandar T Naik, Daniel M Weinreich, Brenda Marilyn Rubenstein
Predicting the viability of beta-lactamase: How folding and binding free energies correlate with beta-lactamase fitness. PloS one 15 (5) (2020)
Tong Cai, Hanjun Yang, Katie Hills-Kimball, Jeong-Pil Song, Hua Zhu, Elan Hofman, Weiwei Zheng, Brenda Marilyn Rubenstein, Ou Chen
Synthesis of All-Inorganic Cd-Doped CsPbCl3 Perovskite Nanocrystals with Dual-Wavelength Emission. The journal of physical chemistry letters 9 (24) (2018)