Stephen D Fried

ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 29

Top Venues

Journal of the American Chemical Society

bioRxiv : the preprint server for biology

The journal of physical chemistry. A

Journal of proteome research

Johns Hopkins University

Stanford University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Johns Hopkins University Jul 01 2018

United States

Assistant Professor :: Chemistry

University of Cambridge Sep 01 2014 - May 01 2018

United Kingdom

Junior Research Fellow :: MRC LMB

Education History

Stanford University

United States

PHD :: Chemistry

Publications

Paulette Sofía Romero-Pérez, Haley M Moran, Azeem Horani, Alexander Truong, Edgar Manriquez-Sandoval, John F Ramirez, Alec Martinez, Edith Gollub, Kara Hunter, Jeffrey M Lotthammer, Ryan J Emenecker, Thomas C Boothby, Alex S Holehouse, Stephen D Fried, Shahar Sukenik
Protein surface chemistry encodes an adaptive resistance to desiccation. bioRxiv : the preprint server for biology (2024)
Edgar Manriquez-Sandoval, Joy Brewer, Gabriela Lule, Samanta Lopez, Stephen D Fried
FLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Data Sets Built on FragPipe. Journal of proteome research (2024)
Paulette Sofía Romero-Pérez, Haley M Moran, Azeem Horani, Alexander Truong, Edgar Manriquez-Sandoval, John F Ramirez, Alec Martinez, Edith Gollub, Kara Hunter, Jeffrey M Lotthammer, Ryan J Emenecker, Thomas C Boothby, Alex S Holehouse, Stephen D Fried, Shahar Sukenik
Protein surface chemistry encodes an adaptive resistance to desiccation. bioRxiv : the preprint server for biology (2024)
Edgar Manriquez-Sandoval, Joy Brewer, Gabriela Lule, Samanta Lopez, Stephen D Fried
FLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Data Sets Built on FragPipe. Journal of proteome research (2024)
Edgar Manriquez-Sandoval, Joy Brewer, Gabriela Lule, Samanta Lopez, Stephen D Fried
FLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Data Sets Built on FragPipe. Journal of proteome research 23 (7) (2024)
Mikhail Makarov, Alma C Sanchez Rocha, Robin Kryštůfek, Ivan Cherepashuk, Volha Dzmitruk, Tatsiana Charnavets, Anneliese M Faustino, Michal Lebl, Kosuke Fujishima, Stephen D Fried, Klara Hlouchova
Early Selection of the Amino Acid Alphabet Was Adaptively Shaped by Biophysical Constraints of Foldability. Journal of the American Chemical Society (2023)
Mikhail Makarov, Alma C Sanchez Rocha, Robin Kryštůfek, Ivan Cherepashuk, Volha Dzmitruk, Tatsiana Charnavets, Anneliese M Faustino, Michal Lebl, Kosuke Fujishima, Stephen D Fried, Klara Hlouchova
Early Selection of the Amino Acid Alphabet Was Adaptively Shaped by Biophysical Constraints of Foldability. Journal of the American Chemical Society 145 (9) (2023)
Carlos R Baiz, Robert F Berger, Kelling J Donald, Julio C de Paula, Stephen D Fried, Brenda Marilyn Rubenstein, Grace Y Stokes, Kana Takematsu, Casey H Londergan
Lowering Activation Barriers to Success in Physical Chemistry (LABSIP): A Community Project. The journal of physical chemistry. A 128 (1) (2023)
Edgar Manriquez-Sandoval, Joy Brewer, Gabriela Lule, Samanta Lopez, Stephen D Fried
FLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Datasets Built on FragPipe. bioRxiv : the preprint server for biology (2023)
Carlos R Baiz, Robert F Berger, Kelling J Donald, Julio C de Paula, Stephen D Fried, Brenda Marilyn Rubenstein, Grace Y Stokes, Kana Takematsu, Casey H Londergan
Lowering Activation Barriers to Success in Physical Chemistry (LABSIP): A Community Project. The journal of physical chemistry. A 128 (1) (2023)
Mikhail Makarov, Alma C Sanchez Rocha, Robin Kryštůfek, Ivan Cherepashuk, Volha Dzmitruk, Tatsiana Charnavets, Anneliese M Faustino, Michal Lebl, Kosuke Fujishima, Stephen D Fried, Klara Hlouchova
Early Selection of the Amino Acid Alphabet Was Adaptively Shaped by Biophysical Constraints of Foldability. Journal of the American Chemical Society 145 (9) (2023)
Edgar Manriquez-Sandoval, Joy Brewer, Gabriela Lule, Samanta Lopez, Stephen D Fried
FLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Datasets Built on FragPipe. bioRxiv : the preprint server for biology (2023)
Edgar Manriquez-Sandoval, Joy Brewer, Gabriela Lule, Samanta Lopez, Stephen D Fried
FLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Datasets Built on FragPipe. bioRxiv : the preprint server for biology (2023)
Edgar Manriquez-Sandoval, Joy Brewer, Gabriela Lule, Samanta Lopez, Stephen D Fried
FLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Datasets Built on FragPipe. bioRxiv : the preprint server for biology (2023)
Anneliese M Faustino, Piyoosh Sharma, Edgar Manriquez-Sandoval, Divya Yadav, Stephen D Fried
Progress toward Proteome-Wide Photo-Cross-Linking to Enable Residue-Level Visualization of Protein Structures and Networks In Vivo. Analytical chemistry (2023)
Carlos R Baiz, Robert F Berger, Kelling J Donald, Julio C de Paula, Stephen D Fried, Brenda Marilyn Rubenstein, Grace Y Stokes, Kana Takematsu, Casey H Londergan
Lowering Activation Barriers to Success in Physical Chemistry (LABSIP): A Community Project. The journal of physical chemistry. A 128 (1) (2023)
Mikhail Makarov, Alma C Sanchez Rocha, Robin Kryštůfek, Ivan Cherepashuk, Volha Dzmitruk, Tatsiana Charnavets, Anneliese M Faustino, Michal Lebl, Kosuke Fujishima, Stephen D Fried, Klara Hlouchova
Early Selection of the Amino Acid Alphabet Was Adaptively Shaped by Biophysical Constraints of Foldability. Journal of the American Chemical Society 145 (9) (2023)
Carlos R Baiz, Robert F Berger, Kelling J Donald, Julio C de Paula, Stephen D Fried, Brenda Marilyn Rubenstein, Grace Y Stokes, Kana Takematsu, Casey H Londergan
Lowering Activation Barriers to Success in Physical Chemistry (LABSIP): A Community Project. The journal of physical chemistry. A (2023)
Marco Paolo Jacinto, Stephen D Fried, Marc M Greenberg
Intracellular Formation of a DNA Damage-Induced, Histone Post-Translational Modification Following Bleomycin Treatment. Journal of the American Chemical Society 144 (17) (2022)
Ilana M Nodelman, Sayan Das, Anneliese M Faustino, Stephen D Fried, Gregory D Bowman, Jean Paul Armache
Nucleosome recognition and DNA distortion by the Chd1 remodeler in a nucleotide-free state. Nature structural & molecular biology 29 (2) (2022)
Stephen D Fried, Kosuke Fujishima, Mikhail Makarov, Ivan Cherepashuk, Klara Hlouchova
Peptides before and during the nucleotide world: an origins story emphasizing cooperation between proteins and nucleic acids. Journal of the Royal Society, Interface 19 (187) (2022)
Daniel A Nissley, Yang Jiang, Fabio Trovato, Ian Sitarik, Karthik B Narayan, Philip To, Yingzi Xia, Stephen D Fried, Edward P O'Brien
Universal protein misfolding intermediates can bypass the proteostasis network and remain soluble and less functional. Nature communications 13 (1) (2022)
Edgar Manriquez-Sandoval, Stephen D Fried
DomainMapper: Accurate domain structure annotation including those with non-contiguous topologies. Protein science : a publication of the Protein Society 31 (11) (2022)
Yang Jiang, Syam Sundar Neti, Ian Sitarik, Priya Pradhan, Philip To, Yingzi Xia, Stephen D Fried, Squire J Booker, Edward P O'Brien
How synonymous mutations alter enzyme structure and function over long timescales. Nature chemistry (2022)
Philip To, Yingzi Xia, Sea On Lee, Taylor Devlin, Karen G Fleming, Stephen D Fried
A proteome-wide map of chaperone-assisted protein refolding in a cytosol-like milieu. Proceedings of the National Academy of Sciences of the United States of America 119 (48) (2022)
Philip To, Briana Whitehead, Haley E Tarbox, Stephen D Fried
Nonrefoldability is Pervasive Across the E. coli Proteome. Journal of the American Chemical Society 143 (30) (2021)
Sea On Lee, Qi Xie, Stephen D Fried
Optimized Loopable Translation as a Platform for the Synthesis of Repetitive Proteins. ACS central science 7 (10) (2021)
Daniele Cervettini, Shan Tang, Stephen D Fried, Julian C W Willis, Louise F H Funke, Lucy J Colwell, Jason W Chin
Rapid discovery and evolution of orthogonal aminoacyl-tRNA synthetase-tRNA pairs. Nature biotechnology 38 (8) (2020)
Yufan Wu, Stephen D Fried, Steven G Boxer
A Preorganized Electric Field Leads to Minimal Geometrical Reorientation in the Catalytic Reaction of Ketosteroid Isomerase. Journal of the American Chemical Society 142 (22) (2020)

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Publication Activity (10 Years)

Top Topics

Top Venues

Stephen D Fried