Brian L Hie (Brian Hie)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 23

Top Venues

Science (New York, N.Y.)

Nature protocols

bioRxiv : the preprint server for biology

Nature biotechnology

Stanford University (BSC)

This page only lists publications with an associated author ORCID identifier.

Education History

Stanford University

United States

BSC :: Computer Science

Publications

Brian L Hie, Soochi Kim, Thomas A Rando, Bryan Bryson, Bonnie Berger
Scanorama: integrating large and diverse single-cell transcriptomic datasets. Nature protocols (2024)
Varun R Shanker, Theodora U J Bruun, Brian L Hie, Peter S Kim
Unsupervised evolution of protein and antibody complexes with a structure-informed language model. Science (New York, N.Y.) 385 (6704) (2024)
Brian L Hie, Soochi Kim, Thomas A Rando, Bryan Bryson, Bonnie Berger
Scanorama: integrating large and diverse single-cell transcriptomic datasets. Nature protocols 19 (8) (2024)
Brian L Hie, Soochi Kim, Thomas A Rando, Bryan Bryson, Bonnie Berger
Scanorama: integrating large and diverse single-cell transcriptomic datasets. Nature protocols 19 (8) (2024)
Varun R Shanker, Theodora U J Bruun, Brian L Hie, Peter S Kim
Unsupervised evolution of protein and antibody complexes with a structure-informed language model. Science (New York, N.Y.) 385 (6704) (2024)
Varun R Shanker, Theodora U J Bruun, Brian L Hie, Peter S Kim
Unsupervised evolution of protein and antibody complexes with a structure-informed language model. Science (New York, N.Y.) 385 (6704) (2024)
Brian L Hie, Soochi Kim, Thomas A Rando, Bryan Bryson, Bonnie Berger
Scanorama: integrating large and diverse single-cell transcriptomic datasets. Nature protocols 19 (8) (2024)
Brian L Hie, Soochi Kim, Thomas A Rando, Bryan Bryson, Bonnie Berger
Scanorama: integrating large and diverse single-cell transcriptomic datasets. Nature protocols (2024)
Zeming Lin, Halil Akin, Roshan Rao, Brian L Hie, Zhongkai Zhu, Wenting Lu, Nikita Smetanin, Robert Verkuil, Ori Kabeli, Yaniv Shmueli, Allan Dos Santos Costa, Maryam Fazel-Zarandi, Tom Sercu, Salvatore Candido, Alexander Rives
Evolutionary-scale prediction of atomic-level protein structure with a language model. Science (New York, N.Y.) 379 (6637) (2023)
Varun R Shanker, Theodora U J Bruun, Brian L Hie, Peter S Kim
Inverse folding of protein complexes with a structure-informed language model enables unsupervised antibody evolution. bioRxiv : the preprint server for biology (2023)
Zeming Lin, Halil Akin, Roshan Rao, Brian L Hie, Zhongkai Zhu, Wenting Lu, Nikita Smetanin, Robert Verkuil, Ori Kabeli, Yaniv Shmueli, Allan Dos Santos Costa, Maryam Fazel-Zarandi, Tom Sercu, Salvatore Candido, Alexander Rives
Evolutionary-scale prediction of atomic-level protein structure with a language model. Science (New York, N.Y.) 379 (6637) (2023)
Brian L Hie, Varun R Shanker, Duo Xu, Theodora U J Bruun, Payton A-B Weidenbacher, Shaogeng Tang, Wesley Wu, John E Pak, Peter S Kim
Efficient evolution of human antibodies from general protein language models. Nature biotechnology (2023)
Varun R Shanker, Theodora U J Bruun, Brian L Hie, Peter S Kim
Inverse folding of protein complexes with a structure-informed language model enables unsupervised antibody evolution. bioRxiv : the preprint server for biology (2023)
Brian L Hie, Varun R Shanker, Duo Xu, Theodora U J Bruun, Payton A-B Weidenbacher, Shaogeng Tang, Wesley Wu, John E Pak, Peter S Kim
Efficient evolution of human antibodies from general protein language models. Nature biotechnology (2023)
Varun R Shanker, Theodora U J Bruun, Brian L Hie, Peter S Kim
Inverse folding of protein complexes with a structure-informed language model enables unsupervised antibody evolution. bioRxiv : the preprint server for biology (2023)
Zeming Lin, Halil Akin, Roshan Rao, Brian L Hie, Zhongkai Zhu, Wenting Lu, Nikita Smetanin, Robert Verkuil, Ori Kabeli, Yaniv Shmueli, Allan Dos Santos Costa, Maryam Fazel-Zarandi, Tom Sercu, Salvatore Candido, Alexander Rives
Evolutionary-scale prediction of atomic-level protein structure with a language model. Science (New York, N.Y.) 379 (6637) (2023)
Varun R Shanker, Theodora U J Bruun, Brian L Hie, Peter S Kim
Inverse folding of protein complexes with a structure-informed language model enables unsupervised antibody evolution. bioRxiv : the preprint server for biology (2023)
Varun R Shanker, Theodora U J Bruun, Brian L Hie, Peter S Kim
Inverse folding of protein complexes with a structure-informed language model enables unsupervised antibody evolution. bioRxiv : the preprint server for biology (2023)
Brian L Hie, Varun R Shanker, Duo Xu, Theodora U J Bruun, Payton A-B Weidenbacher, Shaogeng Tang, Wesley Wu, John E Pak, Peter S Kim
Efficient evolution of human antibodies from general protein language models. Nature biotechnology (2023)
M Cyrus Maher, István Bartha, Steven Weaver, Julia di Iulio, Elena Ferri, Leah B Soriaga, Florian A Lempp, Brian L Hie, Bryan D Bryson, Bonnie Berger, David L Robertson, Gyorgy Snell, Davide Corti, Herbert W Virgin, Sergei L Kosakovsky Pond, Amalio Telenti
Predicting the mutational drivers of future SARS-CoV-2 variants of concern. Science translational medicine 14 (633) (2022)
Brian L Hie, Ellen D Zhong, Bonnie Berger, Bryan D Bryson
Learning the language of viral evolution and escape. Science (New York, N.Y.) 371 (6526) (2021)
Brian L Hie, Bryan D Bryson, Bonnie Berger
Efficient integration of heterogeneous single-cell transcriptomes using Scanorama. Nature biotechnology 37 (6) (2019)
Brian L Hie, Hyunghoon Cho, Bonnie Berger
Realizing private and practical pharmacological collaboration. Science (New York, N.Y.) 362 (6412) (2018)

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Publication Activity (10 Years)

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Brian L Hie (Brian Hie)