Ellen D Zhong

ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 27

Top Venues

Nature

bioRxiv : the preprint server for biology

Nature methods

Nature structural & molecular biology

Massachusetts Institute of Technology (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Massachusetts Institute of Technology

United States

PHD

Publications

Josh Abramson, Jonas Adler, Jack Dunger, Richard Evans, Tim Green, Alexander Pritzel, Olaf Ronneberger, Lindsay Willmore, Andrew J Ballard, Joshua Bambrick, Sebastian W Bodenstein, David A Evans, Chia-Chun Hung, Michael O'Neill, David Reiman, Kathryn Tunyasuvunakool, Zachary Wu, Akvilė Žemgulytė, Eirini Arvaniti, Charles Beattie, Ottavia Bertolli, Alex Bridgland, Alexey Cherepanov, Miles Congreve, Alexander I Cowen-Rivers, Andrew Cowie, Michael Figurnov, Fabian B Fuchs, Hannah Gladman, Rishub Jain, Yousuf A Khan, Caroline M R Low, Kuba Perlin, Anna Potapenko, Pascal Savy, Sukhdeep Singh, Adrian Stecula, Ashok Thillaisundaram, Catherine Tong, Sergei Yakneen, Ellen D Zhong, Michal Zielinski, Augustin Žídek, Victor Bapst, Pushmeet Kohli, Max Jaderberg, Demis Hassabis, John M Jumper
Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature (2024)
Axel Levy, Michal Grzadkowski, Frédéric P Poitevin, Francesca Vallese, Oliver Biggs Clarke, Gordon Wetzstein, Ellen D Zhong
Revealing biomolecular structure and motion with neural ab initio cryo-EM reconstruction. bioRxiv : the preprint server for biology (2024)
Ramya Rangan, Ryan Feathers, Sagar Khavnekar, Adam Lerer, Jake D Johnston, Ron Kelley, Martin Obr, Abhay Kotecha, Ellen D Zhong
CryoDRGN-ET: deep reconstructing generative networks for visualizing dynamic biomolecules inside cells. Nature methods (2024)
Ramya Rangan, Ryan Feathers, Sagar Khavnekar, Adam Lerer, Jake D Johnston, Ron Kelley, Martin Obr, Abhay Kotecha, Ellen D Zhong
CryoDRGN-ET: deep reconstructing generative networks for visualizing dynamic biomolecules inside cells. Nature methods 21 (8) (2024)
Josh Abramson, Jonas Adler, Jack Dunger, Richard Evans, Tim Green, Alexander Pritzel, Olaf Ronneberger, Lindsay Willmore, Andrew J Ballard, Joshua Bambrick, Sebastian W Bodenstein, David A Evans, Chia-Chun Hung, Michael O'Neill, David Reiman, Kathryn Tunyasuvunakool, Zachary Wu, Akvilė Žemgulytė, Eirini Arvaniti, Charles Beattie, Ottavia Bertolli, Alex Bridgland, Alexey Cherepanov, Miles Congreve, Alexander I Cowen-Rivers, Andrew Cowie, Michael Figurnov, Fabian B Fuchs, Hannah Gladman, Rishub Jain, Yousuf A Khan, Caroline M R Low, Kuba Perlin, Anna Potapenko, Pascal Savy, Sukhdeep Singh, Adrian Stecula, Ashok Thillaisundaram, Catherine Tong, Sergei Yakneen, Ellen D Zhong, Michal Zielinski, Augustin Žídek, Victor Bapst, Pushmeet Kohli, Max Jaderberg, Demis Hassabis, John M Jumper
Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature 630 (8016) (2024)
Ramya Rangan, Ryan Feathers, Sagar Khavnekar, Adam Lerer, Jake D Johnston, Ron Kelley, Martin Obr, Abhay Kotecha, Ellen D Zhong
CryoDRGN-ET: deep reconstructing generative networks for visualizing dynamic biomolecules inside cells. Nature methods 21 (8) (2024)
Josh Abramson, Jonas Adler, Jack Dunger, Richard Evans, Tim Green, Alexander Pritzel, Olaf Ronneberger, Lindsay Willmore, Andrew J Ballard, Joshua Bambrick, Sebastian W Bodenstein, David A Evans, Chia-Chun Hung, Michael O'Neill, David Reiman, Kathryn Tunyasuvunakool, Zachary Wu, Akvilė Žemgulytė, Eirini Arvaniti, Charles Beattie, Ottavia Bertolli, Alex Bridgland, Alexey Cherepanov, Miles Congreve, Alexander I Cowen-Rivers, Andrew Cowie, Michael Figurnov, Fabian B Fuchs, Hannah Gladman, Rishub Jain, Yousuf A Khan, Caroline M R Low, Kuba Perlin, Anna Potapenko, Pascal Savy, Sukhdeep Singh, Adrian Stecula, Ashok Thillaisundaram, Catherine Tong, Sergei Yakneen, Ellen D Zhong, Michal Zielinski, Augustin Žídek, Victor Bapst, Pushmeet Kohli, Max Jaderberg, Demis Hassabis, John M Jumper
Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature 630 (8016) (2024)
Josh Abramson, Jonas Adler, Jack Dunger, Richard Evans, Tim Green, Alexander Pritzel, Olaf Ronneberger, Lindsay Willmore, Andrew J Ballard, Joshua Bambrick, Sebastian W Bodenstein, David A Evans, Chia-Chun Hung, Michael O'Neill, David Reiman, Kathryn Tunyasuvunakool, Zachary Wu, Akvilė Žemgulytė, Eirini Arvaniti, Charles Beattie, Ottavia Bertolli, Alex Bridgland, Alexey Cherepanov, Miles Congreve, Alexander I Cowen-Rivers, Andrew Cowie, Michael Figurnov, Fabian B Fuchs, Hannah Gladman, Rishub Jain, Yousuf A Khan, Caroline M R Low, Kuba Perlin, Anna Potapenko, Pascal Savy, Sukhdeep Singh, Adrian Stecula, Ashok Thillaisundaram, Catherine Tong, Sergei Yakneen, Ellen D Zhong, Michal Zielinski, Augustin Žídek, Victor Bapst, Pushmeet Kohli, Max Jaderberg, Demis Hassabis, John M Jumper
Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature 630 (8016) (2024)
Josh Abramson, Jonas Adler, Jack Dunger, Richard Evans, Tim Green, Alexander Pritzel, Olaf Ronneberger, Lindsay Willmore, Andrew J Ballard, Joshua Bambrick, Sebastian W Bodenstein, David A Evans, Chia-Chun Hung, Michael O'Neill, David Reiman, Kathryn Tunyasuvunakool, Zachary Wu, Akvilė Žemgulytė, Eirini Arvaniti, Charles Beattie, Ottavia Bertolli, Alex Bridgland, Alexey Cherepanov, Miles Congreve, Alexander I Cowen-Rivers, Andrew Cowie, Michael Figurnov, Fabian B Fuchs, Hannah Gladman, Rishub Jain, Yousuf A Khan, Caroline M R Low, Kuba Perlin, Anna Potapenko, Pascal Savy, Sukhdeep Singh, Adrian Stecula, Ashok Thillaisundaram, Catherine Tong, Sergei Yakneen, Ellen D Zhong, Michal Zielinski, Augustin Žídek, Victor Bapst, Pushmeet Kohli, Max Jaderberg, Demis Hassabis, John M Jumper
Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature 630 (8016) (2024)
Mahrukh Usmani, Nicolas Coudray, Margot Riggi, Rishwanth Raghu, Harshita Ramchandani, Daija Bobe, Mykhailo Kopylov, Ellen D Zhong, Janet H Iwasa, Damian C Ekiert, Gira Bhabha
Cryo-ET reveals the in situ architecture of the polar tube invasion apparatus from microsporidian parasites. bioRxiv : the preprint server for biology (2024)
Josh Abramson, Jonas Adler, Jack Dunger, Richard Evans, Tim Green, Alexander Pritzel, Olaf Ronneberger, Lindsay Willmore, Andrew J Ballard, Joshua Bambrick, Sebastian W Bodenstein, David A Evans, Chia-Chun Hung, Michael O'Neill, David Reiman, Kathryn Tunyasuvunakool, Zachary Wu, Akvilė Žemgulytė, Eirini Arvaniti, Charles Beattie, Ottavia Bertolli, Alex Bridgland, Alexey Cherepanov, Miles Congreve, Alexander I Cowen-Rivers, Andrew Cowie, Michael Figurnov, Fabian B Fuchs, Hannah Gladman, Rishub Jain, Yousuf A Khan, Caroline M R Low, Kuba Perlin, Anna Potapenko, Pascal Savy, Sukhdeep Singh, Adrian Stecula, Ashok Thillaisundaram, Catherine Tong, Sergei Yakneen, Ellen D Zhong, Michal Zielinski, Augustin Žídek, Victor Bapst, Pushmeet Kohli, Max Jaderberg, Demis Hassabis, John M Jumper
Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature 630 (8016) (2024)
Josh Abramson, Jonas Adler, Jack Dunger, Richard Evans, Tim Green, Alexander Pritzel, Olaf Ronneberger, Lindsay Willmore, Andrew J Ballard, Joshua Bambrick, Sebastian W Bodenstein, David A Evans, Chia-Chun Hung, Michael O'Neill, David Reiman, Kathryn Tunyasuvunakool, Zachary Wu, Akvilė Žemgulytė, Eirini Arvaniti, Charles Beattie, Ottavia Bertolli, Alex Bridgland, Alexey Cherepanov, Miles Congreve, Alexander I Cowen-Rivers, Andrew Cowie, Michael Figurnov, Fabian B Fuchs, Hannah Gladman, Rishub Jain, Yousuf A Khan, Caroline M R Low, Kuba Perlin, Anna Potapenko, Pascal Savy, Sukhdeep Singh, Adrian Stecula, Ashok Thillaisundaram, Catherine Tong, Sergei Yakneen, Ellen D Zhong, Michal Zielinski, Augustin Žídek, Victor Bapst, Pushmeet Kohli, Max Jaderberg, Demis Hassabis, John M Jumper
Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature 630 (8016) (2024)
Josh Abramson, Jonas Adler, Jack Dunger, Richard Evans, Tim Green, Alexander Pritzel, Olaf Ronneberger, Lindsay Willmore, Andrew J Ballard, Joshua Bambrick, Sebastian W Bodenstein, David A Evans, Chia-Chun Hung, Michael O'Neill, David Reiman, Kathryn Tunyasuvunakool, Zachary Wu, Akvilė Žemgulytė, Eirini Arvaniti, Charles Beattie, Ottavia Bertolli, Alex Bridgland, Alexey Cherepanov, Miles Congreve, Alexander I Cowen-Rivers, Andrew Cowie, Michael Figurnov, Fabian B Fuchs, Hannah Gladman, Rishub Jain, Yousuf A Khan, Caroline M R Low, Kuba Perlin, Anna Potapenko, Pascal Savy, Sukhdeep Singh, Adrian Stecula, Ashok Thillaisundaram, Catherine Tong, Sergei Yakneen, Ellen D Zhong, Michal Zielinski, Augustin Žídek, Victor Bapst, Pushmeet Kohli, Max Jaderberg, Demis Hassabis, John M Jumper
Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature 630 (8016) (2024)
Axel Levy, Michal Grzadkowski, Frédéric P Poitevin, Francesca Vallese, Oliver Biggs Clarke, Gordon Wetzstein, Ellen D Zhong
Revealing biomolecular structure and motion with neural ab initio cryo-EM reconstruction. bioRxiv : the preprint server for biology (2024)
Josh Abramson, Jonas Adler, Jack Dunger, Richard Evans, Tim Green, Alexander Pritzel, Olaf Ronneberger, Lindsay Willmore, Andrew J Ballard, Joshua Bambrick, Sebastian W Bodenstein, David A Evans, Chia-Chun Hung, Michael O'Neill, David Reiman, Kathryn Tunyasuvunakool, Zachary Wu, Akvilė Žemgulytė, Eirini Arvaniti, Charles Beattie, Ottavia Bertolli, Alex Bridgland, Alexey Cherepanov, Miles Congreve, Alexander I Cowen-Rivers, Andrew Cowie, Michael Figurnov, Fabian B Fuchs, Hannah Gladman, Rishub Jain, Yousuf A Khan, Caroline M R Low, Kuba Perlin, Anna Potapenko, Pascal Savy, Sukhdeep Singh, Adrian Stecula, Ashok Thillaisundaram, Catherine Tong, Sergei Yakneen, Ellen D Zhong, Michal Zielinski, Augustin Žídek, Victor Bapst, Pushmeet Kohli, Max Jaderberg, Demis Hassabis, John M Jumper
Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature (2024)
Josh Abramson, Jonas Adler, Jack Dunger, Richard Evans, Tim Green, Alexander Pritzel, Olaf Ronneberger, Lindsay Willmore, Andrew J Ballard, Joshua Bambrick, Sebastian W Bodenstein, David A Evans, Chia-Chun Hung, Michael O'Neill, David Reiman, Kathryn Tunyasuvunakool, Zachary Wu, Akvilė Žemgulytė, Eirini Arvaniti, Charles Beattie, Ottavia Bertolli, Alex Bridgland, Alexey Cherepanov, Miles Congreve, Alexander I Cowen-Rivers, Andrew Cowie, Michael Figurnov, Fabian B Fuchs, Hannah Gladman, Rishub Jain, Yousuf A Khan, Caroline M R Low, Kuba Perlin, Anna Potapenko, Pascal Savy, Sukhdeep Singh, Adrian Stecula, Ashok Thillaisundaram, Catherine Tong, Sergei Yakneen, Ellen D Zhong, Michal Zielinski, Augustin Žídek, Victor Bapst, Pushmeet Kohli, Max Jaderberg, Demis Hassabis, John M Jumper
Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature 630 (8016) (2024)
Brianna Romer, Sophie M Travis, Brian P Mahon, Collin T McManus, Philip D Jeffrey, Nicolas Coudray, Rishwanth Raghu, Michael J Rale, Ellen D Zhong, Gira Bhabha, Sabine Petry
Conformational states of the microtubule nucleator, the γ-tubulin ring complex. bioRxiv : the preprint server for biology (2023)
Brianna Romer, Sophie M Travis, Brian P Mahon, Collin T McManus, Philip D Jeffrey, Nicolas Coudray, Rishwanth Raghu, Michael J Rale, Ellen D Zhong, Gira Bhabha, Sabine Petry
Conformational states of the microtubule nucleator, the γ-tubulin ring complex. bioRxiv : the preprint server for biology (2023)
Brianna Romer, Sophie M Travis, Brian P Mahon, Collin T McManus, Philip D Jeffrey, Nicolas Coudray, Rishwanth Raghu, Michael J Rale, Ellen D Zhong, Gira Bhabha, Sabine Petry
Conformational states of the microtubule nucleator, the γ-tubulin ring complex. bioRxiv : the preprint server for biology (2023)
Brianna Romer, Sophie M Travis, Brian P Mahon, Collin T McManus, Philip D Jeffrey, Nicolas Coudray, Rishwanth Raghu, Michael J Rale, Ellen D Zhong, Gira Bhabha, Sabine Petry
Conformational states of the microtubule nucleator, the γ-tubulin ring complex. bioRxiv : the preprint server for biology (2023)
Tatyana Bodrug, Kaeli A Welsh, Derek L Bolhuis, Ethan Paulаkonis, Raquel C Martinez-Chacin, Bei Liu, Nicholas Pinkin, Thomas Bonacci, Liying Cui, Pengning Xu, Olivia Roscow, Sascha Josef Amann, Irina Grishkovskaya, Michael J Emanuele, Joseph S Harrison, Joshua P Steimel, Klaus M Hahn, Wei Zhang, Ellen D Zhong, David Haselbach, Nicholas G Brown
Time-resolved cryo-EM (TR-EM) analysis of substrate polyubiquitination by the RING E3 anaphase-promoting complex/cyclosome (APC/C). Nature structural & molecular biology (2023)
Brianna Romer, Sophie M Travis, Brian P Mahon, Collin T McManus, Philip D Jeffrey, Nicolas Coudray, Rishwanth Raghu, Michael J Rale, Ellen D Zhong, Gira Bhabha, Sabine Petry
Conformational states of the microtubule nucleator, the γ-tubulin ring complex. bioRxiv : the preprint server for biology (2023)
Laurel F Kinman, Barrett M Powell, Ellen D Zhong, Bonnie Berger, Joseph H Davis
Uncovering structural ensembles from single-particle cryo-EM data using cryoDRGN. Nature protocols (2022)
Ellen D Zhong, Tristan Bepler, Bonnie Berger, Joseph H Davis
CryoDRGN: reconstruction of heterogeneous cryo-EM structures using neural networks. Nature methods 18 (2) (2021)
Brian L Hie, Ellen D Zhong, Bonnie Berger, Bryan D Bryson
Learning the language of viral evolution and escape. Science (New York, N.Y.) 371 (6526) (2021)
Samuel G Rodriques, Linlin M Chen, Sophia Liu, Ellen D Zhong, Joseph R Scherrer, Edward S Boyden, Fei Chen
RNA timestamps identify the age of single molecules in RNA sequencing. Nature biotechnology 39 (3) (2020)
Miao Gui, Meisheng Ma, Erica Sze-Tu, Xiangli Wang, Fujiet Koh, Ellen D Zhong, Bonnie Berger, Joseph H Davis, Susan K Dutcher, Rui Zhang, Alan Brown
Structures of radial spokes and associated complexes important for ciliary motility. Nature structural & molecular biology 28 (1) (2020)

Ellen D Zhong.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Ellen D Zhong