Can Firtina

Publication Activity (10 Years)

Years Active: 2022-2024
Publications (10 Years): 11

Top Topics

Single Molecule

Circulating Tumor

Top Venues

Bioinformatics (Oxford, England)

NAR genomics and bioinformatics

Nature protocols

This page only lists publications with an associated author ORCID identifier.

Publications

Mohammed Alser, Brendan Lawlor, Richard J Abdill, Sharon Waymost, Ram Ayyala, Neha Rajkumar, Nathan LaPierre, Jaqueline Brito, André M Ribeiro-Dos-Santos, Nour Almadhoun, Varuni Sarwal, Can Firtina, Tomasz Osinski, Eleazar Eskin, Qiyang Hu, Derek Strong, Byoung-Do B D Kim, Malak S Abedalthagafi, Onur Mutlu, Serghei Mangul
Packaging and containerization of computational methods. Nature protocols (2024)
Can Firtina, Melina Soysal, Joël Lindegger, Onur Mutlu
RawHash2: mapping raw nanopore signals using hash-based seeding and adaptive quantization. Bioinformatics (Oxford, England) 40 (8) (2024)
Gagandeep Singh, Mohammed Alser, Kristof Denolf, Can Firtina, Alireza Khodamoradi, Meryem Banu Cavlak, Henk Corporaal, Onur Mutlu
RUBICON: a framework for designing efficient deep learning-based genomic basecallers. Genome biology 25 (1) (2024)
Gagandeep Singh, Mohammed Alser, Kristof Denolf, Can Firtina, Alireza Khodamoradi, Meryem Banu Cavlak, Henk Corporaal, Onur Mutlu
RUBICON: a framework for designing efficient deep learning-based genomic basecallers. Genome biology 25 (1) (2024)
Can Firtina, Melina Soysal, Joël Lindegger, Onur Mutlu
RawHash2: mapping raw nanopore signals using hash-based seeding and adaptive quantization. Bioinformatics (Oxford, England) 40 (8) (2024)
Can Firtina, Melina Soysal, Joël Lindegger, Onur Mutlu
RawHash2: mapping raw nanopore signals using hash-based seeding and adaptive quantization. Bioinformatics (Oxford, England) 40 (8) (2024)
Gagandeep Singh, Mohammed Alser, Kristof Denolf, Can Firtina, Alireza Khodamoradi, Meryem Banu Cavlak, Henk Corporaal, Onur Mutlu
RUBICON: a framework for designing efficient deep learning-based genomic basecallers. Genome biology 25 (1) (2024)
Can Firtina, Jisung Park, Mohammed Alser, Jeremie S Kim, Damla Senol Cali, Taha Shahroodi, Nika Mansouri Ghiasi, Gagandeep Singh, Konstantinos Kanellopoulos, Can Alkan, Onur Mutlu
BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysis. NAR genomics and bioinformatics 5 (1) (2023)
Can Firtina, Nika Mansouri Ghiasi, Joël Lindegger, Gagandeep Singh, Meryem Banu Cavlak, Haiyu Mao, Onur Mutlu
RawHash: enabling fast and accurate real-time analysis of raw nanopore signals for large genomes. Bioinformatics (Oxford, England) 39 (39 Suppl 1) (2023)
Can Firtina, Jisung Park, Mohammed Alser, Jeremie S Kim, Damla Senol Cali, Taha Shahroodi, Nika Mansouri Ghiasi, Gagandeep Singh, Konstantinos Kanellopoulos, Can Alkan, Onur Mutlu
BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysis. NAR genomics and bioinformatics 5 (1) (2023)
Jeremie S Kim, Can Firtina, Meryem Banu Cavlak, Damla Senol Cali, Can Alkan, Onur Mutlu
FastRemap: a tool for quickly remapping reads between genome assemblies. Bioinformatics (Oxford, England) 38 (19) (2022)