Can Alkan

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 13

Top Venues

Nature communications

Genome research

NAR genomics and bioinformatics

Nature biotechnology

Bilkent Universitesi Muhendislik Fakultesi

Case Western Reserve University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Bilkent Universitesi Muhendislik Fakultesi Feb 16 2012

Turkey

Assistant Professor :: Computer Engineering

Seven Bridges Genomics (United States) Sep 17 2018 - Jan 31 2019

United States

Visiting Scholar :: Graph Alignment Team

Eidgenössische Technische Hochschule Zürich Jan 19 2018 - Jul 20 2018

Switzerland

Visiting Professor :: Computer Science

University of Washington Jul 01 2011 - Dec 31 2011

United States

Acting Assistant Professor :: Genome Sciences

University of Washington Oct 01 2005 - Jun 30 2011

United States

Postdoctoral Fellow :: Genome Sciences

Simon Fraser University Dec 25 2003 - Sep 30 2005

Canada

Visiting Researcher :: Computing Sciences

Education History

Case Western Reserve University Aug 28 2000 - Jun 30 2005

United States

PHD :: Electrical Engineering and Computer Science

Bilkent Universitesi Muhendislik Fakultesi

Turkey

BSC :: Computer Engineering

Publications

Berk Mandiracioglu, Furkan Ozden, Gun Kaynar, Mehmet Alper Yilmaz, Can Alkan, A Ercument Cicek
ECOLE: Learning to call copy number variants on whole exome sequencing data. Nature communications 15 (1) (2024)
Berk Mandiracioglu, Furkan Ozden, Gun Kaynar, Mehmet Alper Yilmaz, Can Alkan, A Ercument Cicek
ECOLE: Learning to call copy number variants on whole exome sequencing data. Nature communications 15 (1) (2024)
Berk Mandiracioglu, Furkan Ozden, Gun Kaynar, Mehmet Alper Yilmaz, Can Alkan, A Ercument Cicek
ECOLE: Learning to call copy number variants on whole exome sequencing data. Nature communications 15 (1) (2024)
Berk Mandiracioglu, Furkan Ozden, Gun Kaynar, Mehmet Alper Yilmaz, Can Alkan, A Ercument Cicek
ECOLE: Learning to call copy number variants on whole exome sequencing data. Nature communications 15 (1) (2024)
Can Firtina, Jisung Park, Mohammed Alser, Jeremie S Kim, Damla Senol Cali, Taha Shahroodi, Nika Mansouri Ghiasi, Gagandeep Singh, Konstantinos Kanellopoulos, Can Alkan, Onur Mutlu
BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysis. NAR genomics and bioinformatics 5 (1) (2023)
Can Firtina, Jisung Park, Mohammed Alser, Jeremie S Kim, Damla Senol Cali, Taha Shahroodi, Nika Mansouri Ghiasi, Gagandeep Singh, Konstantinos Kanellopoulos, Can Alkan, Onur Mutlu
BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysis. NAR genomics and bioinformatics 5 (1) (2023)
Furkan Özden, Can Alkan, A Ercument Cicek
Polishing copy number variant calls on exome sequencing data via deep learning. Genome research 32 (6) (2022)
Jeremie S Kim, Can Firtina, Meryem Banu Cavlak, Damla Senol Cali, Can Alkan, Onur Mutlu
FastRemap: a tool for quickly remapping reads between genome assemblies. Bioinformatics (Oxford, England) 38 (19) (2022)
Justin M Zook, Nancy F Hansen, Nathan D Olson, Lesley Chapman, May Christine V Malicdan, Chunlin Xiao, Stephen Sherry, Sergey Koren, Adam M Phillippy, Paul C Boutros, Sayed Mohammad E Sahraeian, Vincent Huang, Alexandre Rouette, Noah Alexander, Christopher E Mason, Iman Hajirasouliha, Camir Ricketts, Joyce Lee, Rick Tearle, Ian T Fiddes, Alvaro Martinez Barrio, Jeremiah Wala, Andrew Carroll, Noushin Ghaffari, Oscar L Rodriguez, Ali Bashir, Shaun Jackman, John J Farrell, Aaron M Wenger, Can Alkan, Arda Söylev, Michael C Schatz, Shilpa Garg, George M Church, Tobias Marschall, Ken Chen, Xian Fan, Adam C English, Jeffrey A Rosenfeld, Weichen Zhou, Ryan E Mills, Jay M Sage, Jennifer R Davis, Michael D Kaiser, John S Oliver, Anthony P Catalano, Mark J P Chaisson, Noah Spies, Fritz J Sedlazeck, Marc Salit
A robust benchmark for detection of germline large deletions and insertions. Nature biotechnology 38 (11) (2020)
Özge Saatci, Simone Borgoni, Özge Akbulut, Selvi Durmuş, Umar Raza, Erol Eyüpoğlu, Can Alkan, Aytekin Akyol, Özgür Kütük, Stefan Wiemann, Özgür Şahin
Targeting PLK1 overcomes T-DM1 resistance via CDK1-dependent phosphorylation and inactivation of Bcl-2/xL in HER2-positive breast cancer. Oncogene 37 (17) (2018)
Halil Ibrahim Ozercan, Atalay Mert Ileri, Erman Ayday, Can Alkan
Realizing the potential of blockchain technologies in genomics. Genome research 28 (9) (2018)
Elif Dal, Can Alkan
Evaluation of genome scaffolding tools using pooled clone sequencing. Turkish journal of biology = Turk biyoloji dergisi 42 (6) (2018)
Marzieh Eslami Rasekh, Giorgia Chiatante, Mattia Miroballo, Joyce Tang, Mario Ventura, Chris T Amemiya, Evan E Eichler, Francesca Antonacci, Can Alkan
Discovery of large genomic inversions using long range information. BMC genomics 18 (1) (2017)

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Publication Activity (10 Years)

Top Topics

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Can Alkan