Chang Ye

Publication Activity (10 Years)

Years Active: 2022-2024
Publications (10 Years): 30

Top Topics

Idiopathic Pulmonary Fibrosis

Ankylosing Spondylitis

Binding Protein

Top Venues

Nature communications

Nature biotechnology

Nature protocols

This page only lists publications with an associated author ORCID identifier.

Publications

Yu Xiao, Yan-Ming Chen, Zhongyu Zou, Chang Ye, Xiaoyang Dou, Jinjun Wu, Chang Liu, Shun Liu, Hao Yan, Pingluan Wang, Tie-Bo Zeng, Qinzhe Liu, Taekjip Ha, Weixin Tang, Chuan He
Profiling of RNA-binding protein binding sites by in situ reverse transcription-based sequencing. Nature methods 21 (2) (2024)
Yu Xiao, Yan-Ming Chen, Zhongyu Zou, Chang Ye, Xiaoyang Dou, Jinjun Wu, Chang Liu, Shun Liu, Hao Yan, Pingluan Wang, Tie-Bo Zeng, Qinzhe Liu, Taekjip Ha, Weixin Tang, Chuan He
Profiling of RNA-binding protein binding sites by in situ reverse transcription-based sequencing. Nature methods 21 (2) (2024)
Qing Dai, Chang Ye, Iryna Irkliyenko, Yiding Wang, Hui-Lung Sun, Yun Gao, Yushuai Liu, Alana Beadell, José Perea, Ajay Goel, Chuan He
Ultrafast bisulfite sequencing detection of 5-methylcytosine in DNA and RNA. Nature biotechnology (2024)
Qing Dai, Chang Ye, Iryna Irkliyenko, Yiding Wang, Hui-Lung Sun, Yun Gao, Yushuai Liu, Alana Beadell, José Perea, Ajay Goel, Chuan He
Ultrafast bisulfite sequencing detection of 5-methylcytosine in DNA and RNA. Nature biotechnology (2024)
Guanqun Wang, Haoxuan Li, Chang Ye, Kayla He, Shun Liu, Bochen Jiang, Ruiqi Ge, Boyang Gao, Jiangbo Wei, Yutao Zhao, Aixuan Li, Di Zhang, Jianhua Zhang, Chuan He
Quantitative profiling of m 6 A at single base resolution across the life cycle of rice and Arabidopsis. Nature communications 15 (1) (2024)
Matthew O Ross, Yuan Xie, Ryan C Owyang, Chang Ye, Olivia N P Zbihley, Ruitu Lyu, Tong Wu, Pingluan Wang, Olga Karginova, Olufunmilayo I Olopade, Minglei Zhao, Chuan He
PTPN2 copper-sensing relays copper level fluctuations into EGFR/CREB activation and associated CTR1 transcriptional repression. Nature communications 15 (1) (2024)
Yu Xiao, Yan-Ming Chen, Zhongyu Zou, Chang Ye, Xiaoyang Dou, Jinjun Wu, Chang Liu, Shun Liu, Hao Yan, Pingluan Wang, Tie-Bo Zeng, Qinzhe Liu, Taekjip Ha, Weixin Tang, Chuan He
Profiling of RNA-binding protein binding sites by in situ reverse transcription-based sequencing. Nature methods 21 (2) (2024)
Guanqun Wang, Haoxuan Li, Chang Ye, Kayla He, Shun Liu, Bochen Jiang, Ruiqi Ge, Boyang Gao, Jiangbo Wei, Yutao Zhao, Aixuan Li, Di Zhang, Jianhua Zhang, Chuan He
Quantitative profiling of m 6 A at single base resolution across the life cycle of rice and Arabidopsis. Nature communications 15 (1) (2024)
Yutao Zhao, Xinyuan Ma, Chang Ye, Wenlong Li, Kinga Pajdzik, Qing Dai, Hui-Lung Sun, Chuan He
Pseudouridine Detection and Quantification Using Bisulfite Incorporation Hindered Ligation. ACS chemical biology 19 (8) (2024)
Yu Xiao, Yan-Ming Chen, Zhongyu Zou, Chang Ye, Xiaoyang Dou, Jinjun Wu, Chang Liu, Shun Liu, Hao Yan, Pingluan Wang, Tie-Bo Zeng, Qinzhe Liu, Taekjip Ha, Weixin Tang, Chuan He
Profiling of RNA-binding protein binding sites by in situ reverse transcription-based sequencing. Nature methods (2024)
Ruitu Lyu, Yun Gao, Tong Wu, Chang Ye, Pingluan Wang, Chuan He
Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq. Nature communications 15 (1) (2024)
Ruitu Lyu, Yun Gao, Tong Wu, Chang Ye, Pingluan Wang, Chuan He
Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq. Nature communications 15 (1) (2024)
Qing Dai, Chang Ye, Iryna Irkliyenko, Yiding Wang, Hui-Lung Sun, Yun Gao, Yushuai Liu, Alana Beadell, José Perea, Ajay Goel, Chuan He
Ultrafast bisulfite sequencing detection of 5-methylcytosine in DNA and RNA. Nature biotechnology (2024)
Yutao Zhao, Xinyuan Ma, Chang Ye, Wenlong Li, Kinga Pajdzik, Qing Dai, Hui-Lung Sun, Chuan He
Pseudouridine Detection and Quantification Using Bisulfite Incorporation Hindered Ligation. ACS chemical biology (2024)
Ruitu Lyu, Yun Gao, Tong Wu, Chang Ye, Pingluan Wang, Chuan He
Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq. Nature communications 15 (1) (2024)
Yu Xiao, Yan-Ming Chen, Zhongyu Zou, Chang Ye, Xiaoyang Dou, Jinjun Wu, Chang Liu, Shun Liu, Hao Yan, Pingluan Wang, Tie-Bo Zeng, Qinzhe Liu, Taekjip Ha, Weixin Tang, Chuan He
Profiling of RNA-binding protein binding sites by in situ reverse transcription-based sequencing. Nature methods 21 (2) (2024)
Matthew O Ross, Yuan Xie, Ryan C Owyang, Chang Ye, Olivia N P Zbihley, Ruitu Lyu, Tong Wu, Pingluan Wang, Olga Karginova, Olufunmilayo I Olopade, Minglei Zhao, Chuan He
PTPN2 copper-sensing relays copper level fluctuations into EGFR/CREB activation and associated CTR1 transcriptional repression. Nature communications 15 (1) (2024)
Yu Xiao, Yan-Ming Chen, Zhongyu Zou, Chang Ye, Xiaoyang Dou, Jinjun Wu, Chang Liu, Shun Liu, Hao Yan, Pingluan Wang, Tie-Bo Zeng, Qinzhe Liu, Taekjip Ha, Weixin Tang, Chuan He
Profiling of RNA-binding protein binding sites by in situ reverse transcription-based sequencing. Nature methods (2024)
Ruitu Lyu, Yun Gao, Tong Wu, Chang Ye, Pingluan Wang, Chuan He
Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq. Nature communications 15 (1) (2024)
Matthew O Ross, Yuan Xie, Ryan C Owyang, Chang Ye, Olivia N P Zbihley, Ruitu Lyu, Tong Wu, Pingluan Wang, Olga Karginova, Olufunmilayo I Olopade, Minglei Zhao, Chuan He
PTPN2 copper-sensing relays copper level fluctuations into EGFR/CREB activation and associated CTR1 transcriptional repression. Nature communications 15 (1) (2024)
Qing Dai, Chang Ye, Iryna Irkliyenko, Yiding Wang, Hui-Lung Sun, Yun Gao, Yushuai Liu, Alana Beadell, José Perea, Ajay Goel, Chuan He
Ultrafast bisulfite sequencing detection of 5-methylcytosine in DNA and RNA. Nature biotechnology (2024)
Matthew O Ross, Yuan Xie, Ryan C Owyang, Chang Ye, Olivia N P Zbihley, Ruitu Lyu, Tong Wu, Pingluan Wang, Olga Karginova, Olufunmilayo I Olopade, Minglei Zhao, Chuan He
PTPN2 copper-sensing relays copper level fluctuations into EGFR/CREB activation and associated CTR1 transcriptional repression. Nature communications 15 (1) (2024)
Qing Dai, Chang Ye, Iryna Irkliyenko, Yiding Wang, Hui-Lung Sun, Yun Gao, Yushuai Liu, Alana Beadell, José Perea, Ajay Goel, Chuan He
Ultrafast bisulfite sequencing detection of 5-methylcytosine in DNA and RNA. Nature biotechnology (2024)
Li Chen, Li-Sheng Zhang, Chang Ye, Huiqing Zhou, Bei Liu, Boyang Gao, Zixin Deng, Changming Zhao, Chuan He, Bryan C Dickinson
Nm-Mut-seq: a base-resolution quantitative method for mapping transcriptome-wide 2'-O-methylation. Cell research (2023)
Linda Zhang, Xiaoyang Dou, Zhong Zheng, Chang Ye, Thomas X Lu, Hua L Liang, Liangliang Wang, Ralph R Weichselbaum, Chuan He
YTHDF2/m 6 A/NF-κB axis controls anti-tumor immunity by regulating intratumoral Tregs. The EMBO journal (2023)
Li-Sheng Zhang, Chang Ye, Cheng-Wei Ju, Boyang Gao, Xinran Feng, Hui-Lung Sun, Jiangbo Wei, Fan Yang, Qing Dai, Chuan He
BID-seq for transcriptome-wide quantitative sequencing of mRNA pseudouridine at base resolution. Nature protocols (2023)
Ruiqi Ge, Chang Ye, Yong Peng, Qing Dai, Yutao Zhao, Shun Liu, Pingluan Wang, Lulu Hu, Chuan He
Author Correction: m 6 A-SAC-seq for quantitative whole transcriptome m 6 A profiling. Nature protocols (2023)
Xiaoyang Dou, Yu Xiao, Chao Shen, Kitty Wang, Tong Wu, Chang Liu, Yini Li, Xianbin Yu, Yongbo Liu, Qing Dai, Kinga Pajdzik, Chang Ye, Ruiqi Ge, Boyang Gao, Jian Hua Yu, Shuying Sun, Mengjie Chen, Jianjun Chen, Chuan He
RBFOX2 recognizes N 6 -methyladenosine to suppress transcription and block myeloid leukaemia differentiation. Nature cell biology (2023)
Ruiqi Ge, Chang Ye, Yong Peng, Qing Dai, Yutao Zhao, Shun Liu, Pingluan Wang, Lulu Hu, Chuan He
m 6 A-SAC-seq for quantitative whole transcriptome m 6 A profiling. Nature protocols (2022)
Qing Dai, Li-Sheng Zhang, Hui-Lung Sun, Kinga Pajdzik, Lei Yang, Chang Ye, Cheng-Wei Ju, Shun Liu, Yuru Wang, Zhong Zheng, Linda Zhang, Bryan T Harada, Xiaoyang Dou, Iryna Irkliyenko, Xinran Feng, Wen Zhang, Tao Pan, Chuan He
Quantitative sequencing using BID-seq uncovers abundant pseudouridines in mammalian mRNA at base resolution. Nature biotechnology (2022)