Chuan He

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 181

Top Venues

Nature communications

Nature cell biology

Nature biotechnology

ACS chemical biology

This page only lists publications with an associated author ORCID identifier.

Publications

Tong Wu, Anthony Youzhi Cheng, Yuexiu Zhang, Jiayu Xu, Jinjun Wu, Li Wen, Xiao Li, Bei Liu, Xiaoyang Dou, Pingluan Wang, Linda Zhang, Taekjip Ha, Jianrong Li, Zhengqing Ouyang, Chuan He
KARR-seq reveals cellular higher-order RNA structures and RNA-RNA interactions. Nature biotechnology (2024)
Yu Xiao, Yan-Ming Chen, Zhongyu Zou, Chang Ye, Xiaoyang Dou, Jinjun Wu, Chang Liu, Shun Liu, Hao Yan, Pingluan Wang, Tie-Bo Zeng, Qinzhe Liu, Taekjip Ha, Weixin Tang, Chuan He
Profiling of RNA-binding protein binding sites by in situ reverse transcription-based sequencing. Nature methods 21 (2) (2024)
Yueying Zhang, Qianli Dong, Zhen Wang, Qinzhe Liu, Haopeng Yu, Wenqing Sun, Jitender Cheema, Qiancheng You, Ling Ding, Xiaofeng Cao, Chuan He, Yiliang Ding, Huakun Zhang
A fine-scale Arabidopsis chromatin landscape reveals chromatin conformation-associated transcriptional dynamics. Nature communications 15 (1) (2024)
Weiguo Shen, Yongkang Hou, Yunpeng Yi, Fei Li, Chuan He, Jing Wang
G-Clamp Heterocycle Modification Containing Interstrand Photo-Cross-Linker to Capture Intracellular MicroRNA Targets. Journal of the American Chemical Society (2024)
Yu Xiao, Yan-Ming Chen, Zhongyu Zou, Chang Ye, Xiaoyang Dou, Jinjun Wu, Chang Liu, Shun Liu, Hao Yan, Pingluan Wang, Tie-Bo Zeng, Qinzhe Liu, Taekjip Ha, Weixin Tang, Chuan He
Profiling of RNA-binding protein binding sites by in situ reverse transcription-based sequencing. Nature methods 21 (2) (2024)
Jianhua Guo, Zhongyu Zou, Xiaoyang Dou, Xiang Zhao, Yimin Wang, Liqiang Wei, Yan Pi, Yi Wang, Chuan He, Su Guo
Zebrafish Mbd5 binds to RNA m5C and regulates histone deubiquitylation and gene expression in development metabolism and behavior. Nucleic acids research (2024)
Yueying Zhang, Qianli Dong, Zhen Wang, Qinzhe Liu, Haopeng Yu, Wenqing Sun, Jitender Cheema, Qiancheng You, Ling Ding, Xiaofeng Cao, Chuan He, Yiliang Ding, Huakun Zhang
A fine-scale Arabidopsis chromatin landscape reveals chromatin conformation-associated transcriptional dynamics. Nature communications 15 (1) (2024)
Dario F De Jesus, Zijie Zhang, Natalie K Brown, Xiaolu Li, Ling Xiao, Jiang Hu, Matthew J Gaffrey, Garrett Fogarty, Sevim Kahraman, Jiangbo Wei, Giorgio Basile, Tariq M Rana, Clayton Mathews, Alvin C Powers, Audrey V Parent, Mark A Atkinson, Sirano Dhe-Paganon, Decio L Eizirik, Wei-Jun Qian, Chuan He, Rohit N Kulkarni
Redox regulation of m 6 A methyltransferase METTL3 in β-cells controls the innate immune response in type 1 diabetes. Nature cell biology 26 (3) (2024)
Jianhua Guo, Zhongyu Zou, Xiaoyang Dou, Xiang Zhao, Yimin Wang, Liqiang Wei, Yan Pi, Yi Wang, Chuan He, Su Guo
Zebrafish Mbd5 binds to RNA m5C and regulates histone deubiquitylation and gene expression in development metabolism and behavior. Nucleic acids research 52 (8) (2024)
Dario F De Jesus, Zijie Zhang, Natalie K Brown, Xiaolu Li, Ling Xiao, Jiang Hu, Matthew J Gaffrey, Garrett Fogarty, Sevim Kahraman, Jiangbo Wei, Giorgio Basile, Tariq M Rana, Clayton Mathews, Alvin C Powers, Audrey V Parent, Mark A Atkinson, Sirano Dhe-Paganon, Decio L Eizirik, Wei-Jun Qian, Chuan He, Rohit N Kulkarni
Redox regulation of m 6 A methyltransferase METTL3 in β-cells controls the innate immune response in type 1 diabetes. Nature cell biology 26 (3) (2024)
Maria E Kaufman, Omar R Vayani, Kelley Moore, Alexandre Chlenski, Tong Wu, Sang Mee Lee, Ami Vijay Desai, Chuan He, Susan L Cohn, Mark A Applebaum
Characterizing Relationships between T-cell Inflammation and Outcomes in Patients with High-Risk Neuroblastoma According to Mesenchymal and Adrenergic Signatures. Cancer research communications 4 (8) (2024)
Dario F De Jesus, Zijie Zhang, Natalie K Brown, Xiaolu Li, Ling Xiao, Jiang Hu, Matthew J Gaffrey, Garrett Fogarty, Sevim Kahraman, Jiangbo Wei, Giorgio Basile, Tariq M Rana, Clayton Mathews, Alvin C Powers, Audrey V Parent, Mark A Atkinson, Sirano Dhe-Paganon, Decio L Eizirik, Wei-Jun Qian, Chuan He, Rohit N Kulkarni
Redox regulation of m 6 A methyltransferase METTL3 in β-cells controls the innate immune response in type 1 diabetes. Nature cell biology 26 (3) (2024)
Qing Dai, Chang Ye, Iryna Irkliyenko, Yiding Wang, Hui-Lung Sun, Yun Gao, Yushuai Liu, Alana Beadell, José Perea, Ajay Goel, Chuan He
Ultrafast bisulfite sequencing detection of 5-methylcytosine in DNA and RNA. Nature biotechnology (2024)
Dario F De Jesus, Zijie Zhang, Natalie K Brown, Xiaolu Li, Ling Xiao, Jiang Hu, Matthew J Gaffrey, Garrett Fogarty, Sevim Kahraman, Jiangbo Wei, Giorgio Basile, Tariq M Rana, Clayton Mathews, Alvin C Powers, Audrey V Parent, Mark A Atkinson, Sirano Dhe-Paganon, Decio L Eizirik, Wei-Jun Qian, Chuan He, Rohit N Kulkarni
Redox regulation of m 6 A methyltransferase METTL3 in β-cells controls the innate immune response in type 1 diabetes. Nature cell biology 26 (3) (2024)
Dario F De Jesus, Zijie Zhang, Natalie K Brown, Xiaolu Li, Ling Xiao, Jiang Hu, Matthew J Gaffrey, Garrett Fogarty, Sevim Kahraman, Jiangbo Wei, Giorgio Basile, Tariq M Rana, Clayton Mathews, Alvin C Powers, Audrey V Parent, Mark A Atkinson, Sirano Dhe-Paganon, Decio L Eizirik, Wei-Jun Qian, Chuan He, Rohit N Kulkarni
Redox regulation of m 6 A methyltransferase METTL3 in β-cells controls the innate immune response in type 1 diabetes. Nature cell biology 26 (3) (2024)
Qing Dai, Chang Ye, Iryna Irkliyenko, Yiding Wang, Hui-Lung Sun, Yun Gao, Yushuai Liu, Alana Beadell, José Perea, Ajay Goel, Chuan He
Ultrafast bisulfite sequencing detection of 5-methylcytosine in DNA and RNA. Nature biotechnology (2024)
Guanqun Wang, Haoxuan Li, Chang Ye, Kayla He, Shun Liu, Bochen Jiang, Ruiqi Ge, Boyang Gao, Jiangbo Wei, Yutao Zhao, Aixuan Li, Di Zhang, Jianhua Zhang, Chuan He
Quantitative profiling of m 6 A at single base resolution across the life cycle of rice and Arabidopsis. Nature communications 15 (1) (2024)
Chang Liu, Xiaoyang Dou, Yutao Zhao, Linda Zhang, Li-Sheng Zhang, Qing Dai, Yongbo Liu, Tong Wu, Yu Xiao, Chuan He
IGF2BP3 promotes mRNA degradation through internal m 7 G modification. Nature communications 15 (1) (2024)
Matthew O Ross, Yuan Xie, Ryan C Owyang, Chang Ye, Olivia N P Zbihley, Ruitu Lyu, Tong Wu, Pingluan Wang, Olga Karginova, Olufunmilayo I Olopade, Minglei Zhao, Chuan He
PTPN2 copper-sensing relays copper level fluctuations into EGFR/CREB activation and associated CTR1 transcriptional repression. Nature communications 15 (1) (2024)
Yu Xiao, Yan-Ming Chen, Zhongyu Zou, Chang Ye, Xiaoyang Dou, Jinjun Wu, Chang Liu, Shun Liu, Hao Yan, Pingluan Wang, Tie-Bo Zeng, Qinzhe Liu, Taekjip Ha, Weixin Tang, Chuan He
Profiling of RNA-binding protein binding sites by in situ reverse transcription-based sequencing. Nature methods 21 (2) (2024)
Maria E Kaufman, Omar R Vayani, Kelley Moore, Alexandre Chlenski, Tong Wu, Sang Mee Lee, Ami Vijay Desai, Chuan He, Susan L Cohn, Mark A Applebaum
Characterizing Relationships between T-cell Inflammation and Outcomes in Patients with High-Risk Neuroblastoma According to Mesenchymal and Adrenergic Signatures. Cancer research communications 4 (8) (2024)
Dario F De Jesus, Zijie Zhang, Natalie K Brown, Xiaolu Li, Ling Xiao, Jiang Hu, Matthew J Gaffrey, Garrett Fogarty, Sevim Kahraman, Jiangbo Wei, Giorgio Basile, Tariq M Rana, Clayton Mathews, Alvin C Powers, Audrey V Parent, Mark A Atkinson, Sirano Dhe-Paganon, Decio L Eizirik, Wei-Jun Qian, Chuan He, Rohit N Kulkarni
Redox regulation of m 6 A methyltransferase METTL3 in β-cells controls the innate immune response in type 1 diabetes. Nature cell biology 26 (3) (2024)
Dario F De Jesus, Zijie Zhang, Natalie K Brown, Xiaolu Li, Ling Xiao, Jiang Hu, Matthew J Gaffrey, Garrett Fogarty, Sevim Kahraman, Jiangbo Wei, Giorgio Basile, Tariq M Rana, Clayton Mathews, Alvin C Powers, Audrey V Parent, Mark A Atkinson, Sirano Dhe-Paganon, Decio L Eizirik, Wei-Jun Qian, Chuan He, Rohit N Kulkarni
Redox regulation of m 6 A methyltransferase METTL3 in β-cells controls the innate immune response in type 1 diabetes. Nature cell biology (2024)
Guanqun Wang, Haoxuan Li, Chang Ye, Kayla He, Shun Liu, Bochen Jiang, Ruiqi Ge, Boyang Gao, Jiangbo Wei, Yutao Zhao, Aixuan Li, Di Zhang, Jianhua Zhang, Chuan He
Quantitative profiling of m 6 A at single base resolution across the life cycle of rice and Arabidopsis. Nature communications 15 (1) (2024)
Jason Bugno, Liangliang Wang, Xianbin Yu, Xuezhi Cao, Jiaai Wang, Xiaona Huang, Kaiting Yang, Andras Piffko, Katherine Chen, Stephen Y Luo, Emile Naccasha, Yuzhu Hou, Sherry Fu, Chuan He, Yang-Xin Fu, Hua Laura Liang, Ralph R Weichselbaum
Targeting the dendritic cell-secreted immunoregulatory cytokine CCL22 alleviates radioresistance. Clinical cancer research : an official journal of the American Association for Cancer Research (2024)
Dario F De Jesus, Zijie Zhang, Natalie K Brown, Xiaolu Li, Ling Xiao, Jiang Hu, Matthew J Gaffrey, Garrett Fogarty, Sevim Kahraman, Jiangbo Wei, Giorgio Basile, Tariq M Rana, Clayton Mathews, Alvin C Powers, Audrey V Parent, Mark A Atkinson, Sirano Dhe-Paganon, Decio L Eizirik, Wei-Jun Qian, Chuan He, Rohit N Kulkarni
Redox regulation of m 6 A methyltransferase METTL3 in β-cells controls the innate immune response in type 1 diabetes. Nature cell biology 26 (3) (2024)
Dario F De Jesus, Zijie Zhang, Natalie K Brown, Xiaolu Li, Ling Xiao, Jiang Hu, Matthew J Gaffrey, Garrett Fogarty, Sevim Kahraman, Jiangbo Wei, Giorgio Basile, Tariq M Rana, Clayton Mathews, Alvin C Powers, Audrey V Parent, Mark A Atkinson, Sirano Dhe-Paganon, Decio L Eizirik, Wei-Jun Qian, Chuan He, Rohit N Kulkarni
Redox regulation of m 6 A methyltransferase METTL3 in β-cells controls the innate immune response in type 1 diabetes. Nature cell biology (2024)
Yutao Zhao, Xinyuan Ma, Chang Ye, Wenlong Li, Kinga Pajdzik, Qing Dai, Hui-Lung Sun, Chuan He
Pseudouridine Detection and Quantification Using Bisulfite Incorporation Hindered Ligation. ACS chemical biology 19 (8) (2024)
Jianhua Guo, Zhongyu Zou, Xiaoyang Dou, Xiang Zhao, Yimin Wang, Liqiang Wei, Yan Pi, Yi Wang, Chuan He, Su Guo
Zebrafish Mbd5 binds to RNA m5C and regulates histone deubiquitylation and gene expression in development metabolism and behavior. Nucleic acids research 52 (8) (2024)
Weiguo Shen, Yongkang Hou, Yunpeng Yi, Fei Li, Chuan He, Jing Wang
G-Clamp Heterocycle Modification Containing Interstrand Photo-Cross-Linker to Capture Intracellular MicroRNA Targets. Journal of the American Chemical Society 146 (18) (2024)
Dario F De Jesus, Zijie Zhang, Natalie K Brown, Xiaolu Li, Ling Xiao, Jiang Hu, Matthew J Gaffrey, Garrett Fogarty, Sevim Kahraman, Jiangbo Wei, Giorgio Basile, Tariq M Rana, Clayton Mathews, Alvin C Powers, Audrey V Parent, Mark A Atkinson, Sirano Dhe-Paganon, Decio L Eizirik, Wei-Jun Qian, Chuan He, Rohit N Kulkarni
Redox regulation of m 6 A methyltransferase METTL3 in β-cells controls the innate immune response in type 1 diabetes. Nature cell biology 26 (3) (2024)
Yu Xiao, Yan-Ming Chen, Zhongyu Zou, Chang Ye, Xiaoyang Dou, Jinjun Wu, Chang Liu, Shun Liu, Hao Yan, Pingluan Wang, Tie-Bo Zeng, Qinzhe Liu, Taekjip Ha, Weixin Tang, Chuan He
Profiling of RNA-binding protein binding sites by in situ reverse transcription-based sequencing. Nature methods (2024)
Chang Liu, Xiaoyang Dou, Yutao Zhao, Linda Zhang, Li-Sheng Zhang, Qing Dai, Yongbo Liu, Tong Wu, Yu Xiao, Chuan He
IGF2BP3 promotes mRNA degradation through internal m 7 G modification. Nature communications 15 (1) (2024)
Ruitu Lyu, Yun Gao, Tong Wu, Chang Ye, Pingluan Wang, Chuan He
Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq. Nature communications 15 (1) (2024)
Jianhua Guo, Zhongyu Zou, Xiaoyang Dou, Xiang Zhao, Yimin Wang, Liqiang Wei, Yan Pi, Yi Wang, Chuan He, Su Guo
Zebrafish Mbd5 binds to RNA m5C and regulates histone deubiquitylation and gene expression in development metabolism and behavior. Nucleic acids research 52 (8) (2024)
Ruitu Lyu, Yun Gao, Tong Wu, Chang Ye, Pingluan Wang, Chuan He
Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq. Nature communications 15 (1) (2024)
Qing Dai, Chang Ye, Iryna Irkliyenko, Yiding Wang, Hui-Lung Sun, Yun Gao, Yushuai Liu, Alana Beadell, José Perea, Ajay Goel, Chuan He
Ultrafast bisulfite sequencing detection of 5-methylcytosine in DNA and RNA. Nature biotechnology (2024)
Yueying Zhang, Qianli Dong, Zhen Wang, Qinzhe Liu, Haopeng Yu, Wenqing Sun, Jitender Cheema, Qiancheng You, Ling Ding, Xiaofeng Cao, Chuan He, Yiliang Ding, Huakun Zhang
A fine-scale Arabidopsis chromatin landscape reveals chromatin conformation-associated transcriptional dynamics. Nature communications 15 (1) (2024)
Jason Bugno, Liangliang Wang, Xianbin Yu, Xuezhi Cao, Jiaai Wang, Xiaona Huang, Kaiting Yang, Andras Piffko, Katherine Chen, Stephen Y Luo, Emile Naccasha, Yuzhu Hou, Sherry Fu, Chuan He, Yang-Xin Fu, Hua Laura Liang, Ralph R Weichselbaum
Targeting the dendritic cell-secreted immunoregulatory cytokine CCL22 alleviates radioresistance. Clinical cancer research : an official journal of the American Association for Cancer Research (2024)
Jianhua Guo, Zhongyu Zou, Xiaoyang Dou, Xiang Zhao, Yimin Wang, Liqiang Wei, Yan Pi, Yi Wang, Chuan He, Su Guo
Zebrafish Mbd5 binds to RNA m5C and regulates histone deubiquitylation and gene expression in development metabolism and behavior. Nucleic acids research 52 (8) (2024)
Yutao Zhao, Xinyuan Ma, Chang Ye, Wenlong Li, Kinga Pajdzik, Qing Dai, Hui-Lung Sun, Chuan He
Pseudouridine Detection and Quantification Using Bisulfite Incorporation Hindered Ligation. ACS chemical biology (2024)
Wenju Chang, Sheng Zhang, Baoqing Jia, Ke-Feng Ding, Zhizhong Pan, Guoqiang Su, Weiyuan Zhang, Tianyu Liu, Yun-Shi Zhong, Guodong He, Li Ren, Ye Wei, Dongdong Li, Xiao-Long Cui, Jun Yang, Yixiang Shi, Marc Bissonnette, Chuan He, Tripti Khare, Jia Fan, Jianmin Xu
A 5-Hydroxymethylcytosine-Based Noninvasive Model for Early Detection of Colorectal Carcinomas and Advanced Adenomas: The METHOD-2 Study. Clinical cancer research : an official journal of the American Association for Cancer Research 30 (15) (2024)
Ruitu Lyu, Yun Gao, Tong Wu, Chang Ye, Pingluan Wang, Chuan He
Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq. Nature communications 15 (1) (2024)
Tong Wu, Anthony Youzhi Cheng, Yuexiu Zhang, Jiayu Xu, Jinjun Wu, Li Wen, Xiao Li, Bei Liu, Xiaoyang Dou, Pingluan Wang, Linda Zhang, Taekjip Ha, Jianrong Li, Zhengqing Ouyang, Chuan He
KARR-seq reveals cellular higher-order RNA structures and RNA-RNA interactions. Nature biotechnology (2024)
Tong Wu, Anthony Youzhi Cheng, Yuexiu Zhang, Jiayu Xu, Jinjun Wu, Li Wen, Xiao Li, Bei Liu, Xiaoyang Dou, Pingluan Wang, Linda Zhang, Taekjip Ha, Jianrong Li, Zhengqing Ouyang, Chuan He
KARR-seq reveals cellular higher-order RNA structures and RNA-RNA interactions. Nature biotechnology (2024)
Jason Bugno, Liangliang Wang, Xianbin Yu, Xuezhi Cao, Jiaai Wang, Xiaona Huang, Kaiting Yang, Andras Piffko, Katherine Chen, Stephen Y Luo, Emile Naccasha, Yuzhu Hou, Sherry Fu, Chuan He, Yang-Xin Fu, Hua Laura Liang, Ralph R Weichselbaum
Targeting the dendritic cell-secreted immunoregulatory cytokine CCL22 alleviates radioresistance. Clinical cancer research : an official journal of the American Association for Cancer Research (2024)
Yu Xiao, Yan-Ming Chen, Zhongyu Zou, Chang Ye, Xiaoyang Dou, Jinjun Wu, Chang Liu, Shun Liu, Hao Yan, Pingluan Wang, Tie-Bo Zeng, Qinzhe Liu, Taekjip Ha, Weixin Tang, Chuan He
Profiling of RNA-binding protein binding sites by in situ reverse transcription-based sequencing. Nature methods 21 (2) (2024)
Chang Liu, Xiaoyang Dou, Yutao Zhao, Linda Zhang, Li-Sheng Zhang, Qing Dai, Yongbo Liu, Tong Wu, Yu Xiao, Chuan He
IGF2BP3 promotes mRNA degradation through internal m 7 G modification. Nature communications 15 (1) (2024)
Matthew O Ross, Yuan Xie, Ryan C Owyang, Chang Ye, Olivia N P Zbihley, Ruitu Lyu, Tong Wu, Pingluan Wang, Olga Karginova, Olufunmilayo I Olopade, Minglei Zhao, Chuan He
PTPN2 copper-sensing relays copper level fluctuations into EGFR/CREB activation and associated CTR1 transcriptional repression. Nature communications 15 (1) (2024)
Tong Wu, Anthony Youzhi Cheng, Yuexiu Zhang, Jiayu Xu, Jinjun Wu, Li Wen, Xiao Li, Bei Liu, Xiaoyang Dou, Pingluan Wang, Linda Zhang, Taekjip Ha, Jianrong Li, Zhengqing Ouyang, Chuan He
KARR-seq reveals cellular higher-order RNA structures and RNA-RNA interactions. Nature biotechnology (2024)
Yu Xiao, Yan-Ming Chen, Zhongyu Zou, Chang Ye, Xiaoyang Dou, Jinjun Wu, Chang Liu, Shun Liu, Hao Yan, Pingluan Wang, Tie-Bo Zeng, Qinzhe Liu, Taekjip Ha, Weixin Tang, Chuan He
Profiling of RNA-binding protein binding sites by in situ reverse transcription-based sequencing. Nature methods (2024)
Maria E Kaufman, Omar R Vayani, Kelley Moore, Alexandre Chlenski, Tong Wu, Sang Mee Lee, Ami Vijay Desai, Chuan He, Susan L Cohn, Mark A Applebaum
Characterizing Relationships between T-cell Inflammation and Outcomes in Patients with High-Risk Neuroblastoma According to Mesenchymal and Adrenergic Signatures. Cancer research communications 4 (8) (2024)
Dario F De Jesus, Zijie Zhang, Natalie K Brown, Xiaolu Li, Ling Xiao, Jiang Hu, Matthew J Gaffrey, Garrett Fogarty, Sevim Kahraman, Jiangbo Wei, Giorgio Basile, Tariq M Rana, Clayton Mathews, Alvin C Powers, Audrey V Parent, Mark A Atkinson, Sirano Dhe-Paganon, Decio L Eizirik, Wei-Jun Qian, Chuan He, Rohit N Kulkarni
Redox regulation of m 6 A methyltransferase METTL3 in β-cells controls the innate immune response in type 1 diabetes. Nature cell biology 26 (3) (2024)
Yueying Zhang, Qianli Dong, Zhen Wang, Qinzhe Liu, Haopeng Yu, Wenqing Sun, Jitender Cheema, Qiancheng You, Ling Ding, Xiaofeng Cao, Chuan He, Yiliang Ding, Huakun Zhang
A fine-scale Arabidopsis chromatin landscape reveals chromatin conformation-associated transcriptional dynamics. Nature communications 15 (1) (2024)
Tong Wu, Anthony Youzhi Cheng, Yuexiu Zhang, Jiayu Xu, Jinjun Wu, Li Wen, Xiao Li, Bei Liu, Xiaoyang Dou, Pingluan Wang, Linda Zhang, Taekjip Ha, Jianrong Li, Zhengqing Ouyang, Chuan He
KARR-seq reveals cellular higher-order RNA structures and RNA-RNA interactions. Nature biotechnology (2024)
Tong Wu, Anthony Youzhi Cheng, Yuexiu Zhang, Jiayu Xu, Jinjun Wu, Li Wen, Xiao Li, Bei Liu, Xiaoyang Dou, Pingluan Wang, Linda Zhang, Taekjip Ha, Jianrong Li, Zhengqing Ouyang, Chuan He
KARR-seq reveals cellular higher-order RNA structures and RNA-RNA interactions. Nature biotechnology (2024)
Dario F De Jesus, Zijie Zhang, Natalie K Brown, Xiaolu Li, Ling Xiao, Jiang Hu, Matthew J Gaffrey, Garrett Fogarty, Sevim Kahraman, Jiangbo Wei, Giorgio Basile, Tariq M Rana, Clayton Mathews, Alvin C Powers, Audrey V Parent, Mark A Atkinson, Sirano Dhe-Paganon, Decio L Eizirik, Wei-Jun Qian, Chuan He, Rohit N Kulkarni
Redox regulation of m 6 A methyltransferase METTL3 in β-cells controls the innate immune response in type 1 diabetes. Nature cell biology 26 (3) (2024)
Ruitu Lyu, Yun Gao, Tong Wu, Chang Ye, Pingluan Wang, Chuan He
Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq. Nature communications 15 (1) (2024)
Matthew O Ross, Yuan Xie, Ryan C Owyang, Chang Ye, Olivia N P Zbihley, Ruitu Lyu, Tong Wu, Pingluan Wang, Olga Karginova, Olufunmilayo I Olopade, Minglei Zhao, Chuan He
PTPN2 copper-sensing relays copper level fluctuations into EGFR/CREB activation and associated CTR1 transcriptional repression. Nature communications 15 (1) (2024)
Wenju Chang, Sheng Zhang, Baoqing Jia, Ke-Feng Ding, Zhizhong Pan, Guoqiang Su, Weiyuan Zhang, Tianyu Liu, Yun-Shi Zhong, Guodong He, Li Ren, Ye Wei, Dongdong Li, Xiao-Long Cui, Jun Yang, Yixiang Shi, Marc Bissonnette, Chuan He, Tripti Khare, Jia Fan, Jianmin Xu
A 5-hydroxymethylcytosine-based non-invasive model for early detection of colorectal carcinomas and advanced adenomas: the METHOD-2 study. Clinical cancer research : an official journal of the American Association for Cancer Research (2024)
Qing Dai, Chang Ye, Iryna Irkliyenko, Yiding Wang, Hui-Lung Sun, Yun Gao, Yushuai Liu, Alana Beadell, José Perea, Ajay Goel, Chuan He
Ultrafast bisulfite sequencing detection of 5-methylcytosine in DNA and RNA. Nature biotechnology (2024)
Matthew O Ross, Yuan Xie, Ryan C Owyang, Chang Ye, Olivia N P Zbihley, Ruitu Lyu, Tong Wu, Pingluan Wang, Olga Karginova, Olufunmilayo I Olopade, Minglei Zhao, Chuan He
PTPN2 copper-sensing relays copper level fluctuations into EGFR/CREB activation and associated CTR1 transcriptional repression. Nature communications 15 (1) (2024)
Dario F De Jesus, Zijie Zhang, Natalie K Brown, Xiaolu Li, Ling Xiao, Jiang Hu, Matthew J Gaffrey, Garrett Fogarty, Sevim Kahraman, Jiangbo Wei, Giorgio Basile, Tariq M Rana, Clayton Mathews, Alvin C Powers, Audrey V Parent, Mark A Atkinson, Sirano Dhe-Paganon, Decio L Eizirik, Wei-Jun Qian, Chuan He, Rohit N Kulkarni
Redox regulation of m 6 A methyltransferase METTL3 in β-cells controls the innate immune response in type 1 diabetes. Nature cell biology 26 (3) (2024)
Maria E Kaufman, Omar R Vayani, Kelley Moore, Alexandre Chlenski, Tong Wu, Sang Mee Lee, Ami Vijay Desai, Chuan He, Susan L Cohn, Mark A Applebaum
Characterizing relationships between T-cell inflammation and outcomes in patients with high-risk neuroblastoma according to mesenchymal and adrenergic signatures. Cancer research communications (2024)
Dario F De Jesus, Zijie Zhang, Natalie K Brown, Xiaolu Li, Ling Xiao, Jiang Hu, Matthew J Gaffrey, Garrett Fogarty, Sevim Kahraman, Jiangbo Wei, Giorgio Basile, Tariq M Rana, Clayton Mathews, Alvin C Powers, Audrey V Parent, Mark A Atkinson, Sirano Dhe-Paganon, Decio L Eizirik, Wei-Jun Qian, Chuan He, Rohit N Kulkarni
Redox regulation of m 6 A methyltransferase METTL3 in β-cells controls the innate immune response in type 1 diabetes. Nature cell biology 26 (3) (2024)
Qing Dai, Chang Ye, Iryna Irkliyenko, Yiding Wang, Hui-Lung Sun, Yun Gao, Yushuai Liu, Alana Beadell, José Perea, Ajay Goel, Chuan He
Ultrafast bisulfite sequencing detection of 5-methylcytosine in DNA and RNA. Nature biotechnology (2024)
Li Chen, Li-Sheng Zhang, Chang Ye, Huiqing Zhou, Bei Liu, Boyang Gao, Zixin Deng, Changming Zhao, Chuan He, Bryan C Dickinson
Nm-Mut-seq: a base-resolution quantitative method for mapping transcriptome-wide 2'-O-methylation. Cell research (2023)
Yini Li, Xiaoyang Dou, Jun Liu, Yu Xiao, Zhe Zhang, Lindsey R Hayes, Rong Wu, Xiujuan Fu, Yingzhi Ye, Bing Yang, Lyle W Ostrow, Chuan He, Shuying Sun
Globally reduced N 6 -methyladenosine (m 6 A) in C9ORF72-ALS/FTD dysregulates RNA metabolism and contributes to neurodegeneration. Nature neuroscience (2023)
P Cody He, Jiangbo Wei, Xiaoyang Dou, Bryan T Harada, Zijie Zhang, Ruiqi Ge, Chang Liu, Li-Sheng Zhang, Xianbin Yu, Shuai Wang, Ruitu Lyu, Zhongyu Zou, Mengjie Chen, Chuan He
Exon architecture controls mRNA m 6 A suppression and gene expression. Science (New York, N.Y.) 379 (6633) (2023)
Linda Zhang, Xiaoyang Dou, Zhong Zheng, Chang Ye, Thomas X Lu, Hua L Liang, Liangliang Wang, Ralph R Weichselbaum, Chuan He
YTHDF2/m 6 A/NF-κB axis controls anti-tumor immunity by regulating intratumoral Tregs. The EMBO journal (2023)
Jiaxin Xie, Zhong Zheng, Xin Liu, Nan Zhang, Shinyoung Choi, Chuan He, Guangbin Dong
Asymmetric Total Synthesis of (+)-Phainanoid A and Biological Evaluation of the Natural Product and Its Synthetic Analogues. Journal of the American Chemical Society (2023)
Shoubao Ma, Baofa Sun, Songqi Duan, Jingjing Han, Tasha Barr, Jianying Zhang, Marc B Bissonnette, Marcin Kortylewski, Chuan He, Jianjun Chen, Michael A Caligiuri, Jian Hua Yu
YTHDF2 orchestrates tumor-associated macrophage reprogramming and controls antitumor immunity through CD8 + T cells. Nature immunology 24 (2) (2023)
Shoubao Ma, Baofa Sun, Songqi Duan, Jingjing Han, Tasha Barr, Jianying Zhang, Marc B Bissonnette, Marcin Kortylewski, Chuan He, Jianjun Chen, Michael A Caligiuri, Jian Hua Yu
YTHDF2 orchestrates tumor-associated macrophage reprogramming and controls antitumor immunity through CD8 + T cells. Nature immunology (2023)
P Cody He, Jiangbo Wei, Xiaoyang Dou, Bryan T Harada, Zijie Zhang, Ruiqi Ge, Chang Liu, Li-Sheng Zhang, Xianbin Yu, Shuai Wang, Ruitu Lyu, Zhongyu Zou, Mengjie Chen, Chuan He
Exon architecture controls mRNA m 6 A suppression and gene expression. Science (New York, N.Y.) 379 (6633) (2023)
Bochen Jiang, Zhenhui Zhong, Lianfeng Gu, Xueyang Zhang, Jiangbo Wei, Chang Ye, Guifang Lin, Gaoping Qu, Xian Xiang, Chenjin Wen, Maureen Hummel, Julia Bailey-Serres, Qin Wang, Chuan He, Xu Wang, Chentao Lin
Author Correction: Light-induced LLPS of the CRY2/SPA1/FIO1 complex regulating mRNA methylation and chlorophyll homeostasis in Arabidopsis. Nature plants (2023)
Ruitu Lyu, Tong Wu, Gayoung Park, Yu-Ying He, Mengjie Chen, Chuan He
KAS-Analyzer: a novel computational framework for exploring KAS-seq data. Bioinformatics advances 3 (1) (2023)
P Cody He, Jiangbo Wei, Xiaoyang Dou, Bryan T Harada, Zijie Zhang, Ruiqi Ge, Chang Liu, Li-Sheng Zhang, Xianbin Yu, Shuai Wang, Ruitu Lyu, Zhongyu Zou, Mengjie Chen, Chuan He
Exon architecture controls mRNA m 6 A suppression and gene expression. Science (New York, N.Y.) 379 (6633) (2023)
Yini Li, Hang Liu, Chuan He, Lijia Ma
Comparison of transcriptome-wide N6-methyladenosine profiles from healthy trio families reveals regulator-mediated methylation alterations. Genetics (2023)
Wei-Siang Liau, Qiong-Yi Zhao, Adekunle T D Bademosi, Rachel S Gormal, Hao Gong, Paul R Marshall, Ambika Periyakaruppiah, Sachithrani U Madugalle, Esmi L Zajaczkowski, Laura J Leighton, Haobin Ren, Mason R B Musgrove, Joshua Davies, Simone Rauch, Chuan He, Bryan C Dickinson, Xiang Li, Wei Wei, Frédéric A Meunier, Sandra M Fernández-Moya, Michael A Kiebler, Balakumar Srinivasan, Sourav Banerjee, Michael B Clark, Robert C Spitale, Timothy W Bredy
Fear extinction is regulated by the activity of long noncoding RNAs at the synapse. Nature communications 14 (1) (2023)
Li-Sheng Zhang, Qing Dai, Chuan He
Base-Resolution Sequencing Methods for Whole-Transcriptome Quantification of mRNA Modifications. Accounts of chemical research (2023)
Jiaxin Xie, Zhong Zheng, Xin Liu, Nan Zhang, Shinyoung Choi, Chuan He, Guangbin Dong
Asymmetric Total Synthesis of (+)-Phainanoid A and Biological Evaluation of the Natural Product and Its Synthetic Analogues. Journal of the American Chemical Society 145 (8) (2023)
Yini Li, Xiaoyang Dou, Jun Liu, Yu Xiao, Zhe Zhang, Lindsey R Hayes, Rong Wu, Xiujuan Fu, Yingzhi Ye, Bing Yang, Lyle W Ostrow, Chuan He, Shuying Sun
Globally reduced N 6 -methyladenosine (m 6 A) in C9ORF72-ALS/FTD dysregulates RNA metabolism and contributes to neurodegeneration. Nature neuroscience (2023)
Shoubao Ma, Baofa Sun, Songqi Duan, Jingjing Han, Tasha Barr, Jianying Zhang, Marc B Bissonnette, Marcin Kortylewski, Chuan He, Jianjun Chen, Michael A Caligiuri, Jian Hua Yu
YTHDF2 orchestrates tumor-associated macrophage reprogramming and controls antitumor immunity through CD8 + T cells. Nature immunology 24 (2) (2023)
P Cody He, Jiangbo Wei, Xiaoyang Dou, Bryan T Harada, Zijie Zhang, Ruiqi Ge, Chang Liu, Li-Sheng Zhang, Xianbin Yu, Shuai Wang, Ruitu Lyu, Zhongyu Zou, Mengjie Chen, Chuan He
Exon architecture controls mRNA m 6 A suppression and gene expression. Science (New York, N.Y.) 379 (6633) (2023)
Xinyao Lin, Guoshi Chai, Yingmin Wu, Jiexin Li, Feng Chen, Jianzhao Liu, Guan-Zheng Luo, Jordi Tauler, Jun Du, Shuibin Lin, Chuan He, Hong-Sheng Wang
Retraction Note: RNA m 6 A methylation regulates the epithelial mesenchymal transition of cancer cells and translation of Snail. Nature communications 14 (1) (2023)
Shoubao Ma, Baofa Sun, Songqi Duan, Jingjing Han, Tasha Barr, Jianying Zhang, Marc B Bissonnette, Marcin Kortylewski, Chuan He, Jianjun Chen, Michael A Caligiuri, Jian Hua Yu
YTHDF2 orchestrates tumor-associated macrophage reprogramming and controls antitumor immunity through CD8 + T cells. Nature immunology 24 (2) (2023)
Tong Wu, Chuan He
6mA-METL-9 axis regulates innate immunity in C. elegans. Cell research (2023)
Shoubao Ma, Baofa Sun, Songqi Duan, Jingjing Han, Tasha Barr, Jianying Zhang, Marc B Bissonnette, Marcin Kortylewski, Chuan He, Jianjun Chen, Michael A Caligiuri, Jian Hua Yu
YTHDF2 orchestrates tumor-associated macrophage reprogramming and controls antitumor immunity through CD8 + T cells. Nature immunology 24 (2) (2023)
Yulin Chen, Ruixi Wan, Zhongyu Zou, Lihui Lao, Guojian Shao, Yingying Zheng, Ling Tang, Ying Yuan, Yun Ge, Chuan He, Shixian Lin
O-GlcNAcylation determines the translational regulation and phase separation of YTHDF proteins. Nature cell biology 25 (11) (2023)
P Cody He, Jiangbo Wei, Xiaoyang Dou, Bryan T Harada, Zijie Zhang, Ruiqi Ge, Chang Liu, Li-Sheng Zhang, Xianbin Yu, Shuai Wang, Ruitu Lyu, Zhongyu Zou, Mengjie Chen, Chuan He
Exon architecture controls mRNA m 6 A suppression and gene expression. Science (New York, N.Y.) (2023)
Yu-Lan Xiao, Shun Liu, Ruiqi Ge, Yuan Wu, Chuan He, Mengjie Chen, Weixin Tang
Transcriptome-wide profiling and quantification of N 6 -methyladenosine by enzyme-assisted adenosine deamination. Nature biotechnology (2023)
Li-Sheng Zhang, Chang Ye, Cheng-Wei Ju, Boyang Gao, Xinran Feng, Hui-Lung Sun, Jiangbo Wei, Fan Yang, Qing Dai, Chuan He
BID-seq for transcriptome-wide quantitative sequencing of mRNA pseudouridine at base resolution. Nature protocols (2023)
Bochen Jiang, Zhenhui Zhong, Lianfeng Gu, Xueyang Zhang, Jiangbo Wei, Chang Ye, Guifang Lin, Gaoping Qu, Xian Xiang, Chenjin Wen, Maureen Gateas, Julia Bailey-Serres, Qin Wang, Chuan He, Xu Wang, Chentao Lin
Light-induced LLPS of the CRY2/SPA1/FIO1 complex regulating mRNA methylation and chlorophyll homeostasis in Arabidopsis. Nature plants (2023)
Jiaxin Xie, Zhong Zheng, Xin Liu, Nan Zhang, Shinyoung Choi, Chuan He, Guangbin Dong
Asymmetric Total Synthesis of (+)-Phainanoid A and Biological Evaluation of the Natural Product and Its Synthetic Analogues. Journal of the American Chemical Society 145 (8) (2023)
Yanfen Zheng, Xingyang Li, Shuang Deng, Hongzhe Zhao, Ying Ye, Shaoping Zhang, Xudong Huang, Ruihong Bai, Lisha Zhuang, Quanbo Zhou, Mei Li, Jiachun Su, Rui Li, Xiaoqiong Bao, Lingxing Zeng, Rufu Chen, Jian Zheng, Dongxin Lin, Chuan He, Jialiang Zhang, Zhi-Xiang Zuo
CSTF2 mediated mRNA N 6 -methyladenosine modification drives pancreatic ductal adenocarcinoma m 6 A subtypes. Nature communications 14 (1) (2023)
Ruiqi Ge, Chang Ye, Yong Peng, Qing Dai, Yutao Zhao, Shun Liu, Pingluan Wang, Lulu Hu, Chuan He
Author Correction: m 6 A-SAC-seq for quantitative whole transcriptome m 6 A profiling. Nature protocols (2023)
P Cody He, Jiangbo Wei, Xiaoyang Dou, Bryan T Harada, Zijie Zhang, Ruiqi Ge, Chang Liu, Li-Sheng Zhang, Xianbin Yu, Shuai Wang, Ruitu Lyu, Zhongyu Zou, Mengjie Chen, Chuan He
Exon architecture controls mRNA m 6 A suppression and gene expression. Science (New York, N.Y.) (2023)
P Cody He, Jiangbo Wei, Xiaoyang Dou, Bryan T Harada, Zijie Zhang, Ruiqi Ge, Chang Liu, Li-Sheng Zhang, Xianbin Yu, Shuai Wang, Ruitu Lyu, Zhongyu Zou, Mengjie Chen, Chuan He
Exon architecture controls mRNA m 6 A suppression and gene expression. Science (New York, N.Y.) 379 (6633) (2023)
Xiaoyang Dou, Yu Xiao, Chao Shen, Kitty Wang, Tong Wu, Chang Liu, Yini Li, Xianbin Yu, Yongbo Liu, Qing Dai, Kinga Pajdzik, Chang Ye, Ruiqi Ge, Boyang Gao, Jian Hua Yu, Shuying Sun, Mengjie Chen, Jianjun Chen, Chuan He
RBFOX2 recognizes N 6 -methyladenosine to suppress transcription and block myeloid leukaemia differentiation. Nature cell biology (2023)
P Cody He, Jiangbo Wei, Xiaoyang Dou, Bryan T Harada, Zijie Zhang, Ruiqi Ge, Chang Liu, Li-Sheng Zhang, Xianbin Yu, Shuai Wang, Ruitu Lyu, Zhongyu Zou, Mengjie Chen, Chuan He
Exon architecture controls mRNA m 6 A suppression and gene expression. Science (New York, N.Y.) 379 (6633) (2023)

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Chuan He