Mengjie Chen

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 28

Top Topics

Dna Methylation

Gene Expression

Top Venues

Science (New York, N.Y.)

Nature biotechnology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Mengjie Chen
Beyond variability: a novel gene expression stability metric to unveil homeostasis and regulation. bioRxiv : the preprint server for biology (2024)
Xiufen Chen, Jovian Yu, Girish Venkataraman, Sonali M Smith, Mengjie Chen, Alan Cooper, Sravya Tumuluru, Joshua D Brody, James K Godfrey, Justin Kline
T-cell States, Repertoire, and Function in Classical Hodgkin Lymphoma Revealed through Single-Cell Analyses. Cancer immunology research 12 (3) (2024)
Xiufen Chen, Jovian Yu, Girish Venkataraman, Sonali M Smith, Mengjie Chen, Alan Cooper, Sravya Tumuluru, Joshua D Brody, James K Godfrey, Justin Kline
T cell states, repertoire and function in classical Hodgkin lymphoma revealed through single-cell analyses. Cancer immunology research (2024)
Chih-Hsuan Wu, Xiang Zhou, Mengjie Chen
The curses of performing differential expression analysis using single-cell data. bioRxiv : the preprint server for biology (2024)
Xiufen Chen, Jovian Yu, Girish Venkataraman, Sonali M Smith, Mengjie Chen, Alan Cooper, Sravya Tumuluru, Joshua D Brody, James K Godfrey, Justin Kline
T-cell States, Repertoire, and Function in Classical Hodgkin Lymphoma Revealed through Single-Cell Analyses. Cancer immunology research 12 (3) (2024)
P Cody He, Jiangbo Wei, Xiaoyang Dou, Bryan T Harada, Zijie Zhang, Ruiqi Ge, Chang Liu, Li-Sheng Zhang, Xianbin Yu, Shuai Wang, Ruitu Lyu, Zhongyu Zou, Mengjie Chen, Chuan He
Exon architecture controls mRNA m 6 A suppression and gene expression. Science (New York, N.Y.) 379 (6633) (2023)
P Cody He, Jiangbo Wei, Xiaoyang Dou, Bryan T Harada, Zijie Zhang, Ruiqi Ge, Chang Liu, Li-Sheng Zhang, Xianbin Yu, Shuai Wang, Ruitu Lyu, Zhongyu Zou, Mengjie Chen, Chuan He
Exon architecture controls mRNA m 6 A suppression and gene expression. Science (New York, N.Y.) 379 (6633) (2023)
P Cody He, Jiangbo Wei, Xiaoyang Dou, Bryan T Harada, Zijie Zhang, Ruiqi Ge, Chang Liu, Li-Sheng Zhang, Xianbin Yu, Shuai Wang, Ruitu Lyu, Zhongyu Zou, Mengjie Chen, Chuan He
Exon architecture controls mRNA m 6 A suppression and gene expression. Science (New York, N.Y.) 379 (6633) (2023)
Yifan Zhou, Kaixuan Luo, Lifan Liang, Mengjie Chen, Xin He
A new Bayesian factor analysis method improves detection of genes and biological processes affected by perturbations in single-cell CRISPR screening. Nature methods (2023)
P Cody He, Jiangbo Wei, Xiaoyang Dou, Bryan T Harada, Zijie Zhang, Ruiqi Ge, Chang Liu, Li-Sheng Zhang, Xianbin Yu, Shuai Wang, Ruitu Lyu, Zhongyu Zou, Mengjie Chen, Chuan He
Exon architecture controls mRNA m 6 A suppression and gene expression. Science (New York, N.Y.) 379 (6633) (2023)
P Cody He, Jiangbo Wei, Xiaoyang Dou, Bryan T Harada, Zijie Zhang, Ruiqi Ge, Chang Liu, Li-Sheng Zhang, Xianbin Yu, Shuai Wang, Ruitu Lyu, Zhongyu Zou, Mengjie Chen, Chuan He
Exon architecture controls mRNA m 6 A suppression and gene expression. Science (New York, N.Y.) (2023)
Yu-Lan Xiao, Shun Liu, Ruiqi Ge, Yuan Wu, Chuan He, Mengjie Chen, Weixin Tang
Transcriptome-wide profiling and quantification of N 6 -methyladenosine by enzyme-assisted adenosine deamination. Nature biotechnology (2023)
P Cody He, Jiangbo Wei, Xiaoyang Dou, Bryan T Harada, Zijie Zhang, Ruiqi Ge, Chang Liu, Li-Sheng Zhang, Xianbin Yu, Shuai Wang, Ruitu Lyu, Zhongyu Zou, Mengjie Chen, Chuan He
Exon architecture controls mRNA m 6 A suppression and gene expression. Science (New York, N.Y.) (2023)
P Cody He, Jiangbo Wei, Xiaoyang Dou, Bryan T Harada, Zijie Zhang, Ruiqi Ge, Chang Liu, Li-Sheng Zhang, Xianbin Yu, Shuai Wang, Ruitu Lyu, Zhongyu Zou, Mengjie Chen, Chuan He
Exon architecture controls mRNA m 6 A suppression and gene expression. Science (New York, N.Y.) 379 (6633) (2023)
Xiaoyang Dou, Yu Xiao, Chao Shen, Kitty Wang, Tong Wu, Chang Liu, Yini Li, Xianbin Yu, Yongbo Liu, Qing Dai, Kinga Pajdzik, Chang Ye, Ruiqi Ge, Boyang Gao, Jian Hua Yu, Shuying Sun, Mengjie Chen, Jianjun Chen, Chuan He
RBFOX2 recognizes N 6 -methyladenosine to suppress transcription and block myeloid leukaemia differentiation. Nature cell biology (2023)
P Cody He, Jiangbo Wei, Xiaoyang Dou, Bryan T Harada, Zijie Zhang, Ruiqi Ge, Chang Liu, Li-Sheng Zhang, Xianbin Yu, Shuai Wang, Ruitu Lyu, Zhongyu Zou, Mengjie Chen, Chuan He
Exon architecture controls mRNA m 6 A suppression and gene expression. Science (New York, N.Y.) 379 (6633) (2023)
Lulu Hu, Shun Liu, Yong Peng, Ruiqi Ge, Rui Su, Chamara Senevirathne, Bryan T Harada, Qing Dai, Jiangbo Wei, Lisheng Zhang, Ziyang Hao, Liangzhi Luo, Huanyu Wang, Yuru Wang, Minkui Luo, Mengjie Chen, Jianjun Chen, Chuan He
m 6 A RNA modifications are measured at single-base resolution across the mammalian transcriptome. Nature biotechnology 40 (8) (2022)
Luke Vistain, Hoang Van Phan, Bijentimala Keisham, Christian Jordi, Mengjie Chen, Sai T Reddy, SavaÅŸ Tay
Quantification of extracellular proteins, protein complexes and mRNAs in single cells by proximity sequencing. Nature methods 19 (12) (2022)
Lulu Hu, Shun Liu, Yong Peng, Ruiqi Ge, Rui Su, Chamara Senevirathne, Bryan T Harada, Qing Dai, Jiangbo Wei, Lisheng Zhang, Ziyang Hao, Liangzhi Luo, Huanyu Wang, Yuru Wang, Minkui Luo, Mengjie Chen, Jianjun Chen, Chuan He
Author Correction: m 6 A RNA modifications are measured at single-base resolution across the mammalian transcriptome. Nature biotechnology (2022)
Liam F Spurr, Carlos A Martinez, Wenjun Kang, Mengjie Chen, Yuanyuan Zha, Robyn Hseu, Stanley I Gutiontov, William T Turchan, Connor M Lynch, Kelli B Pointer, Paul J Chang, Septimiu Murgu, Aliya N Husain, Brittany Cody, Everett E Vokes, Christine M Bestvina, Jyoti D Patel, Maximillian Diehn, Thomas F Gajewski, Ralph R Weichselbaum, Steven J Chmura, Sean P Pitroda
Highly aneuploid non-small cell lung cancer shows enhanced responsiveness to concurrent radiation and immune checkpoint blockade. Nature cancer (2022)
Débora R Sobreira, Amelia C Joslin, Qi Zhang, Iain Williamson, Grace T Hansen, Kathryn M Farris, Noboru J Sakabe, Nicholas A Sinnott-Armstrong, Grazyna Bozek, Sharon O Jensen-Cody, Kyle H Flippo, Carole Ober, Wendy A Bickmore, Matthew J Potthoff, Mengjie Chen, Melina Claussnitzer, Ivy Aneas, Marcelo Aguiar Nobrega
Extensive pleiotropism and allelic heterogeneity mediate metabolic effects of IRX3 and IRX5. Science (New York, N.Y.) 372 (6546) (2021)
Naser Ansari-Pour, Yonglan Zheng, Toshio F Yoshimatsu, Ayodele Sanni, Mustapha A Ajani, Jean-Baptiste Reynier, Avraam Tapinos, Jason J Pitt, Stefan Dentro, Anna Woodard, Padma Sheila Rajagopal, Dominic Fitzgerald, Andreas J Gruber, Abayomi Odetunde, Abiodun Popoola, Adeyinka G Falusi, Chinedum Peace Babalola, Temidayo Ogundiran, Nasiru Ibrahim, Jordi Barretina, Peter Van Loo, Mengjie Chen, Kevin P White, Oladosu Ojengbede, John Obafunwa, Dezheng Huo, David C Wedge, Olufunmilayo I Olopade
Whole-genome analysis of Nigerian patients with breast cancer reveals ethnic-driven somatic evolution and distinct genomic subtypes. Nature communications 12 (1) (2021)
Ying Ma, Shiquan Sun, Xuequn Shang, Evan T Keller, Mengjie Chen, Xiang Zhou
Integrative differential expression and gene set enrichment analysis using summary statistics for scRNA-seq studies. Nature communications 11 (1) (2020)
Tae Hyun Kim, Xiang Zhou, Mengjie Chen
Demystifying "drop-outs" in single-cell UMI data. Genome biology 21 (1) (2020)
Zijie Zhang, Qi Zhan, Mark Eckert, Allen Zhu, Agnieszka Chryplewicz, Dario F De Jesus, Decheng Ren, Rohit N Kulkarni, Ernst Lengyel, Chuan He, Mengjie Chen
RADAR: differential analysis of MeRIP-seq data with a random effect model. Genome biology 20 (1) (2019)
Mengjie Chen, Xiang Zhou
VIPER: variability-preserving imputation for accurate gene expression recovery in single-cell RNA sequencing studies. Genome biology 19 (1) (2018)
Jiang Chang, Wenle Tan, Zhiqiang Ling, Ruibin Xi, Mingming Shao, Mengjie Chen, Yingying Luo, Yanjie Zhao, Yun Liu, Xiancong Huang, Yuchao Xia, Jinlin Hu, Joel S Parker, David Marron, Qionghua Cui, Linna Peng, Jiahui Chu, Hongmin Li, Zhongli Du, Yaling Han, Wen Tan, Zhihua Liu, Qimin Zhan, Yun Li, Weimin Mao, Chen Wu, Dongxin Lin
Genomic analysis of oesophageal squamous-cell carcinoma identifies alcohol drinking-related mutation signature and genomic alterations. Nature communications 8 (2017)
Grace O Silva, Marni B Siegel, Lisle E Mose, Joel S Parker, Wei Sun, Charles M Perou, Mengjie Chen
SynthEx: a synthetic-normal-based DNA sequencing tool for copy number alteration detection and tumor heterogeneity profiling. Genome biology 18 (1) (2017)