Chongle Pan

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 16

Top Venues

NPJ biofilms and microbiomes

Bioinformatics advances

Journal of biophotonics

mBio

University of Oklahoma

University of Tennessee (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Oklahoma

United States

Associate Professor :: School of Computer Science; and Department of Microbiology and Plant Biology

Oak Ridge National Laboratory

United States

Senior Research Scientist :: Computer Science and Mathematics Division

Oak Ridge National Laboratory

United States

Research Scientist :: Computer Science and Mathematics Division

Oak Ridge National Laboratory

United States

Research Associate :: Computer Science and Mathematics Division

Vanderbilt University

United States

Research Assistant

Education History

University of Tennessee

United States

PHD

East China Normal University

China

BSC

Publications

Jiancheng Li, Yi Xiong, Shichao Feng, Chongle Pan, Xuan Guo
CloudProteoAnalyzer: scalable processing of big data from proteomics using cloud computing. Bioinformatics advances 4 (1) (2024)
Dongyu Wang, Pieter Candry, Kristopher A Hunt, Zachary Flinkstrom, Zheng Shi, Yunlong Liu, Neil Q Wofford, Michael J McInerney, Ralph S Tanner, Kara B De Leόn, Jizhong Zhou, Mari-Karoliina H Winkler, David A Stahl, Chongle Pan
Metaproteomics-informed stoichiometric modeling reveals the responses of wetland microbial communities to oxygen and sulfate exposure. NPJ biofilms and microbiomes 10 (1) (2024)
Jiancheng Li, Yi Xiong, Shichao Feng, Chongle Pan, Xuan Guo
CloudProteoAnalyzer: scalable processing of big data from proteomics using cloud computing. Bioinformatics advances 4 (1) (2024)
Jiancheng Li, Yi Xiong, Shichao Feng, Chongle Pan, Xuan Guo
CloudProteoAnalyzer: scalable processing of big data from proteomics using cloud computing. Bioinformatics advances 4 (1) (2024)
Dongyu Wang, Pieter Candry, Kristopher A Hunt, Zachary Flinkstrom, Zheng Shi, Yunlong Liu, Neil Q Wofford, Michael J McInerney, Ralph S Tanner, Kara B De Leόn, Jizhong Zhou, Mari-Karoliina H Winkler, David A Stahl, Chongle Pan
Metaproteomics-informed stoichiometric modeling reveals the responses of wetland microbial communities to oxygen and sulfate exposure. NPJ biofilms and microbiomes 10 (1) (2024)
Dongyu Wang, Pieter Candry, Kristopher A Hunt, Zachary Flinkstrom, Zheng Shi, Yunlong Liu, Neil Q Wofford, Michael J McInerney, Ralph S Tanner, Kara B De Leόn, Jizhong Zhou, Mari-Karoliina H Winkler, David A Stahl, Chongle Pan
Metaproteomics-informed stoichiometric modeling reveals the responses of wetland microbial communities to oxygen and sulfate exposure. NPJ biofilms and microbiomes 10 (1) (2024)
Adrien Badré, Chongle Pan
Explainable multi-task learning improves the parallel estimation of polygenic risk scores for many diseases through shared genetic basis. PLoS computational biology 19 (7) (2023)
Dongyu Wang, Kristopher A Hunt, Pieter Candry, Xuanyu Tao, Neil Q Wofford, Jizhong Zhou, Michael J McInerney, David A Stahl, Ralph S Tanner, Aifen Zhou, Mari Winkler, Chongle Pan
Cross-Feedings, Competition, and Positive and Negative Synergies in a Four-Species Synthetic Community for Anaerobic Degradation of Cellulose to Methane. mBio (2023)
Li Zhang, Karen R Jonscher, Zuyuan Zhang, Yi Xiong, Ryan S Mueller, Jacob E Friedman, Chongle Pan
Islet autoantibody seroconversion in type-1 diabetes is associated with metagenome-assembled genomes in infant gut microbiomes. Nature communications 13 (1) (2022)
Adrien Badré, Chongle Pan
LINA: A Linearizing Neural Network Architecture for Accurate First-Order and Second-Order Interpretations. IEEE access : practical innovations, open solutions 10 (2022)
Mu Peng, Dongyu Wang, Lauren M Lui, Torben Nielsen, Renmao Tian, Megan L Kempher, Xuanyu Tao, Chongle Pan, Romy Chakraborty, Adam M Deutschbauer, Michael P Thorgersen, Michael W W Adams, Matthew W Fields, Terry C Hazen, Adam P Arkin, Aifen Zhou, Jizhong Zhou
Genomic Features and Pervasive Negative Selection in Rhodanobacter Strains Isolated from Nitrate and Heavy Metal Contaminated Aquifer. Microbiology spectrum 10 (1) (2022)
Chen Wang, Justin C Reynolds, Paul Calle, Avery D Ladymon, Feng Yan, Yuyang Yan, Sam Ton, Kar-Ming Fung, Sanjay G Patel, Zhongxin Yu, Chongle Pan, Qinggong Tang
Computer-aided Veress needle guidance using endoscopic optical coherence tomography and convolutional neural networks. Journal of biophotonics 15 (5) (2022)
Brandon Kieft, Zhou Li, Samuel Bryson, Robert L Hettich, Chongle Pan, Xavier Mayali, Ryan S Mueller
Phytoplankton exudates and lysates support distinct microbial consortia with specialized metabolic and ecophysiological traits. Proceedings of the National Academy of Sciences of the United States of America 118 (41) (2021)
Adrien Badré, Li Zhang, Wellington Muchero, Justin C Reynolds, Chongle Pan
Deep neural network improves the estimation of polygenic risk scores for breast cancer. Journal of human genetics 66 (4) (2020)
Dale A Pelletier, Zhou Li, Tse-Yuan S Lu, Li Zhang, Zhenbin Hu, Geoffrey P Morris, Tijana Glavina Del Rio, Dongyu Wang, Jin-Gui Chen, Chongle Pan
Genome Sequences of 42 Bacteria Isolated from Sorghum bicolor Roots. Microbiology resource announcements 9 (37) (2020)
Qiuming Yao, Zhou Li, Yang C Song, S Joseph Wright, Xuan Guo, Susannah G Tringe, Malak M Tfaily, Ljiljana Paša-Tolić, Terry C Hazen, Benjamin L Turner, Melanie A Mayes, Chongle Pan
Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil. Nature ecology & evolution 2 (3) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Chongle Pan