Bioinformatics advances

Keyphrases

Publications

volume 4, number 1, 2024

Elise F Palzer, Sandra E Safo
mvlearnR and Shiny App for multiview learning. Bioinformatics advances 4 (1) (2024)
Ann-Sophie Buchardt, Xiang Zhou, Claus Thorn Ekstrøm
Joint regression analysis of multiple traits based on genetic relationships. Bioinformatics advances 4 (1) (2024)
Teng Zhang, Xinzheng Dong, Dandan Wang, Chen Huang, Xiaohua Douglas Zhang
RespirAnalyzer: an R package for analyzing data from continuous monitoring of respiratory signals. Bioinformatics advances 4 (1) (2024)
Qiangqiang Wang, Xiaoqian Fan, Shunyao Wu, Xiaoquan Su
PM-CNN: microbiome status recognition and disease detection model based on phylogeny and multi-path neural network. Bioinformatics advances 4 (1) (2024)
Marc-Antoine Gerault, Luc Camoin, Samuel Granjeaud
DIAgui: a Shiny application to process the output from DIA-NN. Bioinformatics advances 4 (1) (2024)
Alfred Ssekagiri, Daudi Jjingo, Nicholas Bbosa, Daniel L Bugembe, David P Kateete, I King Jordan, Pontiano Kaleebu, Deogratius Ssemwanga
HIVseqDB: a portable resource for NGS and sample metadata integration for HIV-1 drug resistance analysis. Bioinformatics advances 4 (1) (2024)
Andre Luiz Campelo Dos Santos, Michael DeGiorgio, Raquel Assis
Predicting evolutionary targets and parameters of gene deletion from expression data. Bioinformatics advances 4 (1) (2024)
Marc-Antoine Gerault, Luc Camoin, Samuel Granjeaud
DIAgui: a Shiny application to process the output from DIA-NN. Bioinformatics advances 4 (1) (2024)
William Edwin Hackett, Deborah Chang, Luis Carvalho, Joseph Zaia
RAMZIS: a bioinformatic toolkit for rigorous assessment of the alterations to glycoprotein composition that occur during biological processes. Bioinformatics advances 4 (1) (2024)
Bhavish Verma, John Parkinson
HiTaxon: a hierarchical ensemble framework for taxonomic classification of short reads. Bioinformatics advances 4 (1) (2024)
Qiangqiang Wang, Xiaoqian Fan, Shunyao Wu, Xiaoquan Su
PM-CNN: microbiome status recognition and disease detection model based on phylogeny and multi-path neural network. Bioinformatics advances 4 (1) (2024)
William Edwin Hackett, Deborah Chang, Luis Carvalho, Joseph Zaia
RAMZIS: a bioinformatic toolkit for rigorous assessment of the alterations to glycoprotein composition that occur during biological processes. Bioinformatics advances 4 (1) (2024)
Farzan Taj, Lincoln D Stein
MMDRP: drug response prediction and biomarker discovery using multi-modal deep learning. Bioinformatics advances 4 (1) (2024)
Teng Zhang, Xinzheng Dong, Dandan Wang, Chen Huang, Xiaohua Douglas Zhang
RespirAnalyzer: an R package for analyzing data from continuous monitoring of respiratory signals. Bioinformatics advances 4 (1) (2024)
Farzan Taj, Lincoln D Stein
MMDRP: drug response prediction and biomarker discovery using multi-modal deep learning. Bioinformatics advances 4 (1) (2024)
Junhao Su, Shumin Li, Zhenxian Zheng, Tak-Wah Lam, Ruibang Luo
ClusterV-Web: a user-friendly tool for profiling HIV quasispecies and generating drug resistance reports from nanopore long-read data. Bioinformatics advances 4 (1) (2024)
Elise F Palzer, Sandra E Safo
mvlearnR and Shiny App for multiview learning. Bioinformatics advances 4 (1) (2024)
Andre Luiz Campelo Dos Santos, Michael DeGiorgio, Raquel Assis
Predicting evolutionary targets and parameters of gene deletion from expression data. Bioinformatics advances 4 (1) (2024)
Matthew Crown, Matthew Bashton
OMEinfo: global geographic metadata for -omics experiments. Bioinformatics advances 4 (1) (2024)
Joanna Żyła, Joanna Tobiasz, Justyna Mika, Paweł Piotr Łabaj, Aleksandra Gruca
Advancements in bioinformatics and computational biology: 15th annual Polish Bioinformatic Society Symposium. Bioinformatics advances 4 (1) (2024)
Zijun Wu, Saurabh Sinha
SPREd: a simulation-supervised neural network tool for gene regulatory network reconstruction. Bioinformatics advances 4 (1) (2024)
Xiaotong Xu, Alexandre M J J Bonvin
DeepRank-GNN-esm: a graph neural network for scoring protein-protein models using protein language model. Bioinformatics advances 4 (1) (2024)
Zijun Wu, Saurabh Sinha
SPREd: a simulation-supervised neural network tool for gene regulatory network reconstruction. Bioinformatics advances 4 (1) (2024)
Xiaotong Xu, Alexandre M J J Bonvin
DeepRank-GNN-esm: a graph neural network for scoring protein-protein models using protein language model. Bioinformatics advances 4 (1) (2024)
Christoffer V Sørensen, Nils Hofmann, Puneet Rawat, Frederik V Sørensen, Anne Ljungars, Victor Greiff, Andreas Hougaard Laustsen, Timothy Patrick Jenkins
ExpoSeq: simplified analysis of high-throughput sequencing data from antibody discovery campaigns. Bioinformatics advances 4 (1) (2024)
Bhavish Verma, John Parkinson
HiTaxon: a hierarchical ensemble framework for taxonomic classification of short reads. Bioinformatics advances 4 (1) (2024)
Zhaoxing Wu, Claudia Solís-Lemus
Ultrafast learning of four-node hybridization cycles in phylogenetic networks using algebraic invariants. Bioinformatics advances 4 (1) (2024)
Zhaoxing Wu, Claudia Solís-Lemus
Ultrafast learning of four-node hybridization cycles in phylogenetic networks using algebraic invariants. Bioinformatics advances 4 (1) (2024)
Bhavish Verma, John Parkinson
HiTaxon: a hierarchical ensemble framework for taxonomic classification of short reads. Bioinformatics advances 4 (1) (2024)
April Shen, Marcos Casado Barbero, Baron Koylass, Kirill Tsukanov, Timothee Cezard, Thomas M Keane
CMAT: ClinVar Mapping and Annotation Toolkit. Bioinformatics advances 4 (1) (2024)
Elise F Palzer, Sandra E Safo
mvlearnR and Shiny App for multiview learning. Bioinformatics advances 4 (1) (2024)
Aarthi Ramakrishnan, George Wangensteen, Sarah Kim, Eric J Nestler, Li Shen
DeepRegFinder: deep learning-based regulatory elements finder. Bioinformatics advances 4 (1) (2024)
Alfred Ssekagiri, Daudi Jjingo, Nicholas Bbosa, Daniel L Bugembe, David P Kateete, I King Jordan, Pontiano Kaleebu, Deogratius Ssemwanga
HIVseqDB: a portable resource for NGS and sample metadata integration for HIV-1 drug resistance analysis. Bioinformatics advances 4 (1) (2024)
William Edwin Hackett, Deborah Chang, Luis Carvalho, Joseph Zaia
RAMZIS: a bioinformatic toolkit for rigorous assessment of the alterations to glycoprotein composition that occur during biological processes. Bioinformatics advances 4 (1) (2024)
Jake Crawford, Maria Chikina, Casey S Greene
Optimizer's dilemma: optimization strongly influences model selection in transcriptomic prediction. Bioinformatics advances 4 (1) (2024)
Andre Luiz Campelo Dos Santos, Michael DeGiorgio, Raquel Assis
Predicting evolutionary targets and parameters of gene deletion from expression data. Bioinformatics advances 4 (1) (2024)
Jake Crawford, Maria Chikina, Casey S Greene
Optimizer's dilemma: optimization strongly influences model selection in transcriptomic prediction. Bioinformatics advances 4 (1) (2024)
William Edwin Hackett, Deborah Chang, Luis Carvalho, Joseph Zaia
RAMZIS: a bioinformatic toolkit for rigorous assessment of the alterations to glycoprotein composition that occur during biological processes. Bioinformatics advances 4 (1) (2024)
Jake Crawford, Maria Chikina, Casey S Greene
Optimizer's dilemma: optimization strongly influences model selection in transcriptomic prediction. Bioinformatics advances 4 (1) (2024)
Junhao Su, Shumin Li, Zhenxian Zheng, Tak-Wah Lam, Ruibang Luo
ClusterV-Web: a user-friendly tool for profiling HIV quasispecies and generating drug resistance reports from nanopore long-read data. Bioinformatics advances 4 (1) (2024)
Teng Zhang, Xinzheng Dong, Dandan Wang, Chen Huang, Xiaohua Douglas Zhang
RespirAnalyzer: an R package for analyzing data from continuous monitoring of respiratory signals. Bioinformatics advances 4 (1) (2024)
Justin A Womack, Viren Shah, Said H Audi, Scott S Terhune, Ranjan K Dash
BioModME for building and simulating dynamic computational models of complex biological systems. Bioinformatics advances 4 (1) (2024)
Joanna Żyła, Joanna Tobiasz, Justyna Mika, Paweł Piotr Łabaj, Aleksandra Gruca
Advancements in bioinformatics and computational biology: 15th annual Polish Bioinformatic Society Symposium. Bioinformatics advances 4 (1) (2024)
Bhavish Verma, John Parkinson
HiTaxon: a hierarchical ensemble framework for taxonomic classification of short reads. Bioinformatics advances 4 (1) (2024)
Matthew Crown, Matthew Bashton
OMEinfo: global geographic metadata for -omics experiments. Bioinformatics advances 4 (1) (2024)
Zijun Wu, Saurabh Sinha
SPREd: a simulation-supervised neural network tool for gene regulatory network reconstruction. Bioinformatics advances 4 (1) (2024)
Nuria Senar, Mark van de Wiel, Aeilko H Zwinderman, Michel H Hof
TOSCCA: a framework for interpretation and testing of sparse canonical correlations. Bioinformatics advances 4 (1) (2024)
Christoffer V Sørensen, Nils Hofmann, Puneet Rawat, Frederik V Sørensen, Anne Ljungars, Victor Greiff, Andreas Hougaard Laustsen, Timothy Patrick Jenkins
ExpoSeq: simplified analysis of high-throughput sequencing data from antibody discovery campaigns. Bioinformatics advances 4 (1) (2024)
April Shen, Marcos Casado Barbero, Baron Koylass, Kirill Tsukanov, Timothee Cezard, Thomas M Keane
CMAT: ClinVar Mapping and Annotation Toolkit. Bioinformatics advances 4 (1) (2024)
Ann-Sophie Buchardt, Xiang Zhou, Claus Thorn Ekstrøm
Joint regression analysis of multiple traits based on genetic relationships. Bioinformatics advances 4 (1) (2024)