Daniel B Sloan

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 48

Top Topics

Arabidopsis Thaliana

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Genome biology and evolution

Molecular biology and evolution

This page only lists publications with an associated author ORCID identifier.

Publications

Justin L Conover, Corrinne E Grover, Joel Sharbrough, Daniel B Sloan, Daniel G Peterson, Jonathan F Wendel
Little evidence for homoeologous gene conversion and homoeologous exchange events in Gossypium allopolyploids. American journal of botany (2024)
Daniel B Sloan, Justin L Conover, Corrinne E Grover, Jonathan F Wendel, Joel Sharbrough
Polyploid plants take cytonuclear perturbations in stride. The Plant cell (2024)
Daniel B Sloan, Amanda K Broz, Shady A Kuster, Viraj Muthye, Alejandro Peñafiel-Ayala, Jennifer R Marron, Dennis V Lavrov, Luis G Brieba
Expansion of the MutS Gene Family in Plants. bioRxiv : the preprint server for biology (2024)
Kendra D Maclaine, Lydia G Tressel, Zhiqiang Wu, Shenglong Kan, Amanda K Broz, Jeffrey P Mower, Tracey A Ruhlman, Robert K Jansen, Daniel B Sloan, Justin C Havird
Genome copy number predicts extreme evolutionary rate variation in plant mitochondrial DNA. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Kendra D Maclaine, Lydia G Tressel, Zhiqiang Wu, Shenglong Kan, Amanda K Broz, Jeffrey P Mower, Tracey A Ruhlman, Robert K Jansen, Daniel B Sloan, Justin C Havird
Genome copy number predicts extreme evolutionary rate variation in plant mitochondrial DNA. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Justin L Conover, Corrinne E Grover, Joel Sharbrough, Daniel B Sloan, Daniel G Peterson, Jonathan F Wendel
Little evidence for homoeologous gene conversion and homoeologous exchange events in Gossypium allopolyploids. American journal of botany 111 (8) (2024)
Daniel B Sloan, Justin L Conover, Corrinne E Grover, Jonathan F Wendel, Joel Sharbrough
Polyploid plants take cytonuclear perturbations in stride. The Plant cell 36 (4) (2024)
Daniel B Sloan, Justin L Conover, Corrinne E Grover, Jonathan F Wendel, Joel Sharbrough
Polyploid plants take cytonuclear perturbations in stride. The Plant cell 36 (4) (2024)
Qun Lian, Shuai Li, Shenglong Kan, Xuezhu Liao, Sanwen Huang, Daniel B Sloan, Zhi-Qiang Wu
Association Analysis Provides Insights into Plant Mitonuclear Interactions. Molecular biology and evolution 41 (2) (2024)
Daniel B Sloan, Amanda K Broz, Shady A Kuster, Viraj Muthye, Alejandro Peñafiel-Ayala, Jennifer R Marron, Dennis V Lavrov, Luis G Brieba
Expansion of the MutS Gene Family in Plants. bioRxiv : the preprint server for biology (2024)
Kendra D Maclaine, Lydia G Tressel, Zhiqiang Wu, Shenglong Kan, Amanda K Broz, Jeffrey P Mower, Tracey A Ruhlman, Robert K Jansen, Daniel B Sloan, Justin C Havird
Genome copy number predicts extreme evolutionary rate variation in plant mitochondrial DNA. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Qun Lian, Shuai Li, Shenglong Kan, Xuezhu Liao, Sanwen Huang, Daniel B Sloan, Zhi-Qiang Wu
Association analysis provides insights into plant mitonuclear interactions. Molecular biology and evolution (2024)
Qun Lian, Shuai Li, Shenglong Kan, Xuezhu Liao, Sanwen Huang, Daniel B Sloan, Zhi-Qiang Wu
Association Analysis Provides Insights into Plant Mitonuclear Interactions. Molecular biology and evolution 41 (2) (2024)
Kendra D Maclaine, Lydia G Tressel, Zhiqiang Wu, Shenglong Kan, Amanda K Broz, Jeffrey P Mower, Tracey A Ruhlman, Robert K Jansen, Daniel B Sloan, Justin C Havird
Genome copy number predicts extreme evolutionary rate variation in plant mitochondrial DNA. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Kendra D Maclaine, Lydia G Tressel, Zhiqiang Wu, Shenglong Kan, Amanda K Broz, Jeffrey P Mower, Tracey A Ruhlman, Robert K Jansen, Daniel B Sloan, Justin C Havird
Genome copy number predicts extreme evolutionary rate variation in plant mitochondrial DNA. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Kendra D Maclaine, Lydia G Tressel, Zhiqiang Wu, Shenglong Kan, Amanda K Broz, Jeffrey P Mower, Tracey A Ruhlman, Robert K Jansen, Daniel B Sloan, Justin C Havird
Genome copy number predicts extreme evolutionary rate variation in plant mitochondrial DNA. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Daniel B Sloan, Justin L Conover, Corrinne E Grover, Jonathan F Wendel, Joel Sharbrough
Polyploid plants take cytonuclear perturbations in stride. The Plant cell (2024)
Daniel B Sloan, Rachael A DeTar, Jessica M Warren
Aminoacyl-tRNA synthetase evolution within the dynamic tripartite translation system of plant cells. Genome biology and evolution (2023)
Jessica M Warren, Amanda K Broz, Ana Martinez-Hottovy, Christian Elowsky, Alan C Christensen, Daniel B Sloan
Rewiring of aminoacyl-tRNA synthetase localization and interactions in plants with extensive mitochondrial tRNA gene loss. Molecular biology and evolution (2023)
Peter D Fields, Melody M Weber, Gus Waneka, Amanda K Broz, Daniel B Sloan
Chromosome-level genome assembly for the angiosperm Silene conica. Genome biology and evolution (2023)
Zoé Postel, Daniel B Sloan, Sophie Gallina, Cécile Godé, Eric Schmitt, Sophie Mangenot, Laurence Drouard, Jean-Stéphane Varré, Pascal Touzet
The decoupled evolution of the organellar genomes of Silene nutans leads to distinct roles in the speciation process. The New phytologist (2023)
Daniel B Sloan, Jessica M Warren, Alissa M Williams, Shady A Kuster, Evan S Forsythe
Incompatibility and Interchangeability in Molecular Evolution. Genome biology and evolution 15 (1) (2023)
Peter D Fields, Melody M Weber, Gus Waneka, Amanda K Broz, Daniel B Sloan
Chromosome-level genome assembly for the angiosperm Silene conica . bioRxiv : the preprint server for biology (2023)
Daniel B Sloan, Jessica M Warren, Alissa M Williams, Shady A Kuster, Evan S Forsythe
Incompatibility and Interchangeability in Molecular Evolution. Genome biology and evolution 15 (1) (2023)
Amanda K Broz, Daniel B Sloan, Iain G Johnston
Stochastic organelle genome segregation through Arabidopsis development and reproduction. The New phytologist (2023)
Daniel B Sloan, Jessica M Warren, Alissa M Williams, Shady A Kuster, Evan S Forsythe
Incompatibility and Interchangeability in Molecular Evolution. Genome biology and evolution 15 (1) (2023)
Jessica M Warren, Thalia Salinas-Giegé, Deborah A Triant, Douglas R Taylor, Laurence Drouard, Daniel B Sloan
Rapid Shifts in Mitochondrial tRNA Import in a Plant Lineage with Extensive Mitochondrial tRNA Gene Loss. Molecular biology and evolution 38 (12) (2022)
Amanda K Broz, Alexandra H Keene, Matheus Fernandes Gyorfy, Mychaela Hodous, Iain G Johnston, Daniel B Sloan
Sorting of mitochondrial and plastid heteroplasmy in Arabidopsis is extremely rapid and depends on MSH1 activity. Proceedings of the National Academy of Sciences of the United States of America 119 (34) (2022)
Amanda K Broz, Gus Waneka, Zhi-Qiang Wu, Matheus Fernandes Gyorfy, Daniel B Sloan
Detecting de novo mitochondrial mutations in angiosperms with highly divergent evolutionary rates. Genetics 218 (1) (2022)
Corrinne E Grover, Evan S Forsythe, Joel Sharbrough, Emma R Miller, Justin L Conover, Rachael Ann DeTar, Carolina Chavarro, Mark A Arick, Daniel G Peterson, Soraya C M Leal-Bertioli, Daniel B Sloan, Jonathan F Wendel
Variation in cytonuclear expression accommodation among allopolyploid plants. Genetics 222 (2) (2022)
Gus Waneka, Joshua M Svendsen, Justin C Havird, Daniel B Sloan
Mitochondrial mutations in Caenorhabditis elegans show signatures of oxidative damage and an AT-bias. Genetics 219 (2) (2022)
Daniel B Sloan, Jessica M Warren, Alissa M Williams, Shady A Kuster, Evan S Forsythe
Incompatibility and Interchangeability in Molecular Evolution. Genome biology and evolution (2022)
Joel Sharbrough, Justin L Conover, Matheus Fernandes Gyorfy, Corrinne E Grover, Emma R Miller, Jonathan F Wendel, Daniel B Sloan
Global Patterns of Subgenome Evolution in Organelle-Targeted Genes of Six Allotetraploid Angiosperms. Molecular biology and evolution 39 (4) (2022)
Yi Zou, Weidong Zhu, Daniel B Sloan, Zhi-Qiang Wu
Long-read sequencing characterizes mitochondrial and plastid genome variants in Arabidopsis msh1 mutants. The Plant journal : for cell and molecular biology 112 (3) (2022)
Alissa M Williams, Michael W Itgen, Amanda K Broz, Olivia G Carter, Daniel B Sloan
Long-read transcriptome and other genomic resources for the angiosperm Silene noctiflora. G3 (Bethesda, Md.) 11 (8) (2022)
Peter D Fields, Gus Waneka, Matthew Naish, Michael C Schatz, Ian R Henderson, Daniel B Sloan
Complete Sequence of a 641-kb Insertion of Mitochondrial DNA in the Arabidopsis thaliana Nuclear Genome. Genome biology and evolution 14 (5) (2022)
Evan S Forsythe, Corrinne E Grover, Emma R Miller, Justin L Conover, Mark A Arick, M Carolina F Chavarro, Soraya C M Leal-Bertioli, Daniel G Peterson, Joel Sharbrough, Jonathan F Wendel, Daniel B Sloan
Organellar transcripts dominate the cellular mRNA pool across plants of varying ploidy levels. Proceedings of the National Academy of Sciences of the United States of America 119 (30) (2022)
Salah E Abdel-Ghany, Lisa M LaManna, Haleakala T Harroun, Pal Maliga, Daniel B Sloan
Rapid sequence evolution is associated with genetic incompatibilities in the plastid Clp complex. Plant molecular biology 108 (3) (2022)
Jessica M Warren, Daniel B Sloan
Hopeful monsters: unintended sequencing of famously malformed mite mitochondrial tRNAs reveals widespread expression and processing of sense-antisense pairs. NAR genomics and bioinformatics 3 (1) (2021)
Evan S Forsythe, Alissa M Williams, Daniel B Sloan
Genome-wide signatures of plastid-nuclear coevolution point to repeated perturbations of plastid proteostasis systems across angiosperms. The Plant cell 33 (4) (2021)
Matheus Fernandes Gyorfy, Emma R Miller, Justin L Conover, Corrinne E Grover, Jonathan F Wendel, Daniel B Sloan, Joel Sharbrough
Nuclear-cytoplasmic balance: whole genome duplications induce elevated organellar genome copy number. The Plant journal : for cell and molecular biology 108 (1) (2021)
Jessica M Warren, Thalia Salinas-Giegé, Guillaume Hummel, Nicole L Coots, Joshua M Svendsen, Kristen C Brown, Laurence Drouard, Daniel B Sloan
Combining tRNA sequencing methods to characterize plant tRNA expression and post-transcriptional modification. RNA biology 18 (1) (2020)
Zhi-Qiang Wu, Gus Waneka, Daniel B Sloan
The Tempo and Mode of Angiosperm Mitochondrial Genome Divergence Inferred from Intraspecific Variation in Arabidopsis thaliana. G3 (Bethesda, Md.) 10 (3) (2020)
Zhi-Qiang Wu, Gus Waneka, Amanda K Broz, Connor R King, Daniel B Sloan
MSH1 is required for maintenance of the low mutation rates in plant mitochondrial and plastid genomes. Proceedings of the National Academy of Sciences of the United States of America 117 (28) (2020)
Alissa M Williams, Giulia Friso, Klaas J van Wijk, Daniel B Sloan
Extreme variation in rates of evolution in the plastid Clp protease complex. The Plant journal : for cell and molecular biology 98 (2) (2019)
Daniel B Sloan, Jessica M Warren, Alissa M Williams, Zhi-Qiang Wu, Salah E Abdel-Ghany, Adam J Chicco, Justin C Havird
Cytonuclear integration and co-evolution. Nature reviews. Genetics 19 (10) (2019)
Zhi-Qiang Wu, Daniel B Sloan
Recombination and intraspecific polymorphism for the presence and absence of entire chromosomes in mitochondrial genomes. Heredity 122 (5) (2018)
Daniel B Sloan
Nuclear and mitochondrial RNA editing systems have opposite effects on protein diversity. Biology letters 13 (8) (2017)