Klaas J van Wijk (Klaas Van Wijk)

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 31

Top Topics

Mass Spectrometry

Binding Protein

Top Venues

Journal of proteome research

Plant physiology

Journal of experimental botany

This page only lists publications with an associated author ORCID identifier.

Publications

Klaas J van Wijk, Zach Adam
Does the polyubiquitination pathway operate inside intact chloroplasts to remove proteins? The Plant cell (2024)
Klaas J van Wijk, Tami Leppert, Zhi Sun, Isabell Guzchenko, Erica Debley, Georgia Sauermann, Pratyush Routray, Luis Mendoza, Qi Sun, Eric W Deutsch
The Zea mays PeptideAtlas: A New Maize Community Resource. Journal of proteome research (2024)
Klaas J van Wijk
Intra-chloroplast proteases: A holistic network view of chloroplast proteolysis. The Plant cell (2024)
Nancy A Eckardt, Pascal Genschik, Liwen Jiang, Xin Li, Marisa S Otegui, Ari Sadanandom, Steven H Spoel, Klaas J van Wijk, Dolf Weijers
Focus on proteolysis. The Plant cell (2024)
Nancy A Eckardt, Tamar Avin-Wittenberg, Diane C Bassham, Poyu Chen, Qian Chen, Jun Fang, Pascal Genschik, Abi S Ghifari, Angelica M Guercio, Daniel J Gibbs, Maren Heese, R Paul Jarvis, Simon Michaeli, Monika W Murcha, Sergey Mursalimov, Sandra Noir, Malathy Palayam, Bruno Peixoto, Pedro L Rodriguez, Andreas Schaller, Arp Schnittger, Giovanna Serino, Nitzan Shabek, Annick Stintzi, Frederica L Theodoulou, Suayib Üstün, Klaas J van Wijk, Ning Wei, Reetika Debroy, Feifei Yu, Hongtao Zhang
The lowdown on breakdown: Open questions in plant proteolysis. The Plant cell (2024)
Bingjian Yuan, Klaas J van Wijk
The chloroplast protease system degrades stromal DUF760-1 and DUF-2 domain-containing proteins at different rates. Plant physiology (2024)
Klaas J van Wijk, Tami Leppert, Zhi Sun, Isabell Guzchenko, Erica Debley, Georgia Sauermann, Pratyush Routray, Luis Mendoza, Qi Sun, Eric W Deutsch
The Zea mays PeptideAtlas: A New Maize Community Resource. Journal of proteome research (2024)
Klaas J van Wijk, Tami Leppert, Zhi Sun, Alyssa Kearly, Margaret Li, Luis Mendoza, Isabell Guzchenko, Erica Debley, Georgia Sauermann, Pratyush Routray, Sagunya Malhotra, Andrew Nelson, Qi Sun, Eric W Deutsch
Detection of the Arabidopsis Proteome and Its Post-translational Modifications and the Nature of the Unobserved (Dark) Proteome in PeptideAtlas. Journal of proteome research 23 (1) (2023)
Klaas J van Wijk, Tami Leppert, Zhi Sun, Alyssa Kearly, Margaret Li, Luis Mendoza, Isabell Guzchenko, Erica Debley, Georgia Sauermann, Pratyush Routray, Sagunya Malhotra, Andrew Nelson, Qi Sun, Eric W Deutsch
Detection of the Arabidopsis Proteome and Its Post-translational Modifications and the Nature of the Unobserved (Dark) Proteome in PeptideAtlas. Journal of proteome research (2023)
Klaas J van Wijk, Tami Leppert, Zhi Sun, Eric W Deutsch
Does the Ubiquitination Degradation Pathway Really Reach inside of the Chloroplast? A Re-Evaluation of Mass Spectrometry-Based Assignments of Ubiquitination. Journal of proteome research (2023)
Klaas J van Wijk, Tami Leppert, Zhi Sun, Eric W Deutsch
Does the Ubiquitination Degradation Pathway Really Reach inside of the Chloroplast? A Re-Evaluation of Mass Spectrometry-Based Assignments of Ubiquitination. Journal of proteome research (2023)
Klaas J van Wijk, Tami Leppert, Zhi Sun, Eric W Deutsch
Does the Ubiquitination Degradation Pathway Really Reach inside of the Chloroplast? A Re-Evaluation of Mass Spectrometry-Based Assignments of Ubiquitination. Journal of proteome research (2023)
Klaas J van Wijk, Tami Leppert, Zhi Sun, Alyssa Kearly, Margaret Li, Luis Mendoza, Isabell Guzchenko, Erica Debley, Georgia Sauermann, Pratyush Routray, Sagunya Malhotra, Andrew Nelson, Qi Sun, Eric W Deutsch
Detection of the Arabidopsis Proteome and Its Post-translational Modifications and the Nature of the Unobserved (Dark) Proteome in PeptideAtlas. Journal of proteome research 23 (1) (2023)
Klaas J van Wijk, Tami Leppert, Zhi Sun, Alyssa Kearly, Margaret Li, Luis Mendoza, Isabell Guzchenko, Erica Debley, Georgia Sauermann, Pratyush Routray, Sagunya Malhotra, Andrew Nelson, Qi Sun, Eric W Deutsch
Detection of the Arabidopsis Proteome and Its Post-translational Modifications and the Nature of the Unobserved (Dark) Proteome in PeptideAtlas. Journal of proteome research 23 (1) (2023)
Klaas J van Wijk, Tami Leppert, Zhi Sun, Alyssa Kearly, Margaret Li, Luis Mendoza, Isabell Guzchenko, Erica Debley, Georgia Sauermann, Pratyush Routray, Sagunya Malhotra, Andrew Nelson, Qi Sun, Eric W Deutsch
Detection of the Arabidopsis Proteome and Its Post-translational Modifications and the Nature of the Unobserved (Dark) Proteome in PeptideAtlas. Journal of proteome research (2023)
Klaas J van Wijk, Stéphane Bentolila, Tami Leppert, Qi Sun, Zhi Sun, Luis Mendoza, Margaret Li, Eric W Deutsch
Detection and editing of the updated Arabidopsis plastid- and mitochondrial-encoded proteomes through PeptideAtlas. Plant physiology (2023)
Klaas J van Wijk, Tami Leppert, Zhi Sun, Alyssa Kearly, Margaret Li, Luis Mendoza, Isabell Guzchenko, Erica Debley, Georgia Sauermann, Pratyush Routray, Sagunya Malhotra, Andrew D L Nelson, Qi Sun, Eric W Deutsch
Mapping the Arabidopsis thaliana proteome in PeptideAtlas and the nature of the unobserved (dark) proteome; strategies towards a complete proteome. bioRxiv : the preprint server for biology (2023)
Klaas J van Wijk, Tami Leppert, Qi Sun, Sascha S Boguraev, Zhi Sun, Luis Mendoza, Eric W Deutsch
The Arabidopsis PeptideAtlas: Harnessing worldwide proteomics data to create a comprehensive community proteomics resource. The Plant cell 33 (11) (2022)
Elden Rowland, Jitae Kim, Giulia Friso, Anton Poliakov, Lalit Ponnala, Qi Sun, Klaas J van Wijk
The CLP and PREP protease systems coordinate maturation and degradation of the chloroplast proteome in Arabidopsis thaliana. The New phytologist 236 (4) (2022)
null null, Suryatapa Ghosh Jha, Alexander T Borowsky, Benjamin J Cole, Noah Fahlgren, Andrew D Farmer, Shao-Shan Carol Huang, Purva Karia, Marc Libault, Nicholas J Provart, Selena L Rice, Maite Saura-Sanchez, Pinky Agarwal, Amir H Ahkami, Christopher R Anderton, Steven P Briggs, Jennifer A N Brophy, Peter Denolf, Luigi F Di Costanzo, Moises Exposito-Alonso, Stefania Giacomello, Fabio Gomez Cano, Kerstin Kaufmann, Dae Kwan Ko, Sagar Kumar, Andrey Victorovich Malkovskiy, Naomi Nakayama, Toshihiro Obata, Marisa S Otegui, Gergo Palfalvi, Elsa-Herminia Quezada, Rajveer Singh, Richard Glen Uhrig, Jamie Waese, Klaas J van Wijk, R Clay Wright, David W Ehrhardt, Kenneth D Birnbaum, Seung Yon Rhee
Vision, challenges and opportunities for a Plant Cell Atlas. eLife 10 (2021)
Elena J S Michel, Lalit Ponnala, Klaas J van Wijk
Tissue-type specific accumulation of the plastoglobular proteome, transcriptional networks, and plastoglobular functions. Journal of experimental botany 72 (13) (2021)
Nazmul H Bhuiyan, Elden Rowland, Giulia Friso, Lalit Ponnala, Elena J S Michel, Klaas J van Wijk
Autocatalytic Processing and Substrate Specificity of Arabidopsis Chloroplast Glutamyl Peptidase. Plant physiology 184 (1) (2020)
Alissa M Williams, Giulia Friso, Klaas J van Wijk, Daniel B Sloan
Extreme variation in rates of evolution in the plastid Clp protease complex. The Plant journal : for cell and molecular biology 98 (2) (2019)
Cyrille Montandon, David A Dougan, Klaas J van Wijk
N-degron specificity of chloroplast ClpS1 in plants. FEBS letters 593 (9) (2019)
Cyrille Montandon, Giulia Friso, Jui-Yun Rei Liao, Junsik Choi, Klaas J van Wijk
In Vivo Trapping of Proteins Interacting with the Chloroplast CLPC1 Chaperone: Potential Substrates and Adaptors. Journal of proteome research 18 (6) (2019)
Jui-Yun Rei Liao, Giulia Friso, Jitae Kim, Klaas J van Wijk
Consequences of the loss of catalytic triads in chloroplast CLPPR protease core complexes in vivo. Plant direct 2 (10) (2018)
Nazmul H Bhuiyan, Klaas J van Wijk
Functions and substrates of plastoglobule-localized metallopeptidase PGM48. Plant signaling & behavior 12 (6) (2017)
Kristina Majsec, Nazmul H Bhuiyan, Qi Sun, Sunita Kumari, Vivek Kumar, Doreen Ware, Klaas J van Wijk
The Plastid and Mitochondrial Peptidase Network in Arabidopsis thaliana: A Foundation for Testing Genetic Interactions and Functions in Organellar Proteostasis. The Plant cell 29 (11) (2017)
Nazmul H Bhuiyan, Giulia Friso, Elden Rowland, Kristina Majsec, Klaas J van Wijk
The Plastoglobule-Localized Metallopeptidase PGM48 Is a Positive Regulator of Senescence in Arabidopsis thaliana. The Plant cell 28 (12) (2016)
Jens N Lohscheider, Giulia Friso, Klaas J van Wijk
Phosphorylation of plastoglobular proteins in Arabidopsis thaliana. Journal of experimental botany 67 (13) (2016)
Janina Apitz, Kenji Nishimura, Judith Schmied, Anja Wolf, Boris Hedtke, Klaas J van Wijk, Bernhard Grimm
Posttranslational Control of ALA Synthesis Includes GluTR Degradation by Clp Protease and Stabilization by GluTR-Binding Protein. Plant physiology 170 (4) (2016)
Giulia Friso, Klaas J van Wijk
Posttranslational Protein Modifications in Plant Metabolism. Plant physiology 169 (3) (2015)
Jitae Kim, Matthew S Kimber, Kenji Nishimura, Giulia Friso, Lance Schultz, Lalit Ponnala, Klaas J van Wijk
Structures, Functions, and Interactions of ClpT1 and ClpT2 in the Clp Protease System of Arabidopsis Chloroplasts. The Plant cell 27 (5) (2015)
Kenji Nishimura, Janina Apitz, Giulia Friso, Jitae Kim, Lalit Ponnala, Bernhard Grimm, Klaas J van Wijk
Discovery of a Unique Clp Component, ClpF, in Chloroplasts: A Proposed Binary ClpF-ClpS1 Adaptor Complex Functions in Substrate Recognition and Delivery. The Plant cell 27 (10) (2015)
Elden Rowland, Jitae Kim, Nazmul H Bhuiyan, Klaas J van Wijk
The Arabidopsis Chloroplast Stromal N-Terminome: Complexities of Amino-Terminal Protein Maturation and Stability. Plant physiology 169 (3) (2015)
Nazmul H Bhuiyan, Giulia Friso, Anton Poliakov, Lalit Ponnala, Klaas J van Wijk
MET1 is a thylakoid-associated TPR protein involved in photosystem II supercomplex formation and repair in Arabidopsis. The Plant cell 27 (1) (2015)
Klaas J van Wijk, Giulia Friso, Dirk Walther, Waltraud X Schulze
Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs. The Plant cell 26 (6) (2014)