Daniel Hoffmann

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 31

Top Venues

Nature communications

Nature cardiovascular research

RSC advances

eLife

University of Duisburg-Essen

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Duisburg-Essen Apr 01 2006

Germany

Professor :: Bioinformatics and Computational Biophysics

Publications

Ali A Tuz, Susmita Ghosh, Laura Karsch, Dimitris Ttoouli, Sai P Sata, Özgür Ulusoy, Andreas Kraus, Nils Hoerenbaum, Jan-Niklas Wolf, Sabrina Lohmann, Franziska Zwirnlein, Viola Kaygusuz, Vivian Lakovic, Hannah-Lea Tummes, Alexander Beer, Markus Gallert, Stephanie Thiebes, Altea Qefalia, Zülal Cibir, Medina Antler, Sebastian Korste, Elias Haj Yehia, Lars Michel, Tienush Rassaf, Britta Kaltwasser, Hossam Abdelrahman, Ayan Mohamud Yusuf, Chen Wang, Dongpei Yin, Lars Haeusler, Smiths Lueong, Mathis Richter, Daniel Robert Engel, Martin Stenzel, Oliver Soehnlein, Benedikt Frank, Mialitiana Solo-Nomenjanahary, Benoît Ho Ho Tin Noé, Jens T Siveke, Matthias Totzeck, Daniel Hoffmann, Anika Grüneboom, Nina Hagemann, Anja Hasenberg, Jean-Philippe Desilles, Mikael Mazighi, Albert Sickmann, Jianxu Chen, Janine Gronewold, Matthias Gunzer, Vikramjeet Singh
Stroke and myocardial infarction induce neutrophil extracellular trap release disrupting lymphoid organ structure and immunoglobulin secretion. Nature cardiovascular research 3 (5) (2024)
Ali A Tuz, Susmita Ghosh, Laura Karsch, Dimitris Ttoouli, Sai P Sata, Özgür Ulusoy, Andreas Kraus, Nils Hoerenbaum, Jan-Niklas Wolf, Sabrina Lohmann, Franziska Zwirnlein, Viola Kaygusuz, Vivian Lakovic, Hannah-Lea Tummes, Alexander Beer, Markus Gallert, Stephanie Thiebes, Altea Qefalia, Zülal Cibir, Medina Antler, Sebastian Korste, Elias Haj Yehia, Lars Michel, Tienush Rassaf, Britta Kaltwasser, Hossam Abdelrahman, Ayan Mohamud Yusuf, Chen Wang, Dongpei Yin, Lars Haeusler, Smiths Lueong, Mathis Richter, Daniel Robert Engel, Martin Stenzel, Oliver Soehnlein, Benedikt Frank, Mialitiana Solo-Nomenjanahary, Benoît Ho Ho Tin Noé, Jens T Siveke, Matthias Totzeck, Daniel Hoffmann, Anika Grüneboom, Nina Hagemann, Anja Hasenberg, Jean-Philippe Desilles, Mikael Mazighi, Albert Sickmann, Jianxu Chen, Janine Gronewold, Matthias Gunzer, Vikramjeet Singh
Stroke and myocardial infarction induce neutrophil extracellular trap release disrupting lymphoid organ structure and immunoglobulin secretion. Nature cardiovascular research 3 (5) (2024)
Kuan Cheok Lei, Nalini Srinivas, Mitalee Chandra, Kervarrec Thibault, Etienne Coyaud, Ivelina Spassova, Lukas Peiffer, Roland Houben, Masahiro Shuda, Daniel Hoffmann, David Schrama, Jürgen Christian Becker
Merkel cell polyomavirus pan-T antigen knockdown reduces cancer cell stemness and promotes neural differentiation independent of RB1. Journal of medical virology 96 (7) (2024)
Ali A Tuz, Susmita Ghosh, Laura Karsch, Dimitris Ttoouli, Sai P Sata, Özgür Ulusoy, Andreas Kraus, Nils Hoerenbaum, Jan-Niklas Wolf, Sabrina Lohmann, Franziska Zwirnlein, Viola Kaygusuz, Vivian Lakovic, Hannah-Lea Tummes, Alexander Beer, Markus Gallert, Stephanie Thiebes, Altea Qefalia, Zülal Cibir, Medina Antler, Sebastian Korste, Elias Haj Yehia, Lars Michel, Tienush Rassaf, Britta Kaltwasser, Hossam Abdelrahman, Ayan Mohamud Yusuf, Chen Wang, Dongpei Yin, Lars Haeusler, Smiths Lueong, Mathis Richter, Daniel Robert Engel, Martin Stenzel, Oliver Soehnlein, Benedikt Frank, Mialitiana Solo-Nomenjanahary, Benoît Ho Ho Tin Noé, Jens T Siveke, Matthias Totzeck, Daniel Hoffmann, Anika Grüneboom, Nina Hagemann, Anja Hasenberg, Jean-Philippe Desilles, Mikael Mazighi, Albert Sickmann, Jianxu Chen, Janine Gronewold, Matthias Gunzer, Vikramjeet Singh
Stroke and myocardial infarction induce neutrophil extracellular trap release disrupting lymphoid organ structure and immunoglobulin secretion. Nature cardiovascular research 3 (5) (2024)
Kuan Cheok Lei, Nalini Srinivas, Mitalee Chandra, Kervarrec Thibault, Etienne Coyaud, Ivelina Spassova, Lukas Peiffer, Roland Houben, Masahiro Shuda, Daniel Hoffmann, David Schrama, Jürgen Christian Becker
Merkel cell polyomavirus pan-T antigen knockdown reduces cancer cell stemness and promotes neural differentiation independent of RB1. Journal of medical virology 96 (7) (2024)
Ali A Tuz, Susmita Ghosh, Laura Karsch, Dimitris Ttoouli, Sai P Sata, Özgür Ulusoy, Andreas Kraus, Nils Hoerenbaum, Jan-Niklas Wolf, Sabrina Lohmann, Franziska Zwirnlein, Viola Kaygusuz, Vivian Lakovic, Hannah-Lea Tummes, Alexander Beer, Markus Gallert, Stephanie Thiebes, Altea Qefalia, Zülal Cibir, Medina Antler, Sebastian Korste, Elias Haj Yehia, Lars Michel, Tienush Rassaf, Britta Kaltwasser, Hossam Abdelrahman, Ayan Mohamud Yusuf, Chen Wang, Dongpei Yin, Lars Haeusler, Smiths Lueong, Mathis Richter, Daniel Robert Engel, Martin Stenzel, Oliver Soehnlein, Benedikt Frank, Mialitiana Solo-Nomenjanahary, Benoît Ho Ho Tin Noé, Jens T Siveke, Matthias Totzeck, Daniel Hoffmann, Anika Grüneboom, Nina Hagemann, Anja Hasenberg, Jean-Philippe Desilles, Mikael Mazighi, Albert Sickmann, Jianxu Chen, Janine Gronewold, Matthias Gunzer, Vikramjeet Singh
Stroke and myocardial infarction induce neutrophil extracellular trap release disrupting lymphoid organ structure and immunoglobulin secretion. Nature cardiovascular research 3 (5) (2024)
Fabian Gude, Jurij Froese, Dominique Manikowski, Daniele Di Iorio, Jean-Noël Grad, Seraphine Valeska Wegner, Daniel Hoffmann, Melissa Kennedy, Ralf P Richter, Georg Steffes, Kay Grobe
Hedgehog is relayed through dynamic heparan sulfate interactions to shape its gradient. Nature communications 14 (1) (2023)
Fabian Gude, Jurij Froese, Dominique Manikowski, Daniele Di Iorio, Jean-Noël Grad, Seraphine Valeska Wegner, Daniel Hoffmann, Melissa Kennedy, Ralf P Richter, Georg Steffes, Kay Grobe
Hedgehog is relayed through dynamic heparan sulfate interactions to shape its gradient. Nature communications 14 (1) (2023)
Fabian Gude, Jurij Froese, Dominique Manikowski, Daniele Di Iorio, Jean-Noël Grad, Seraphine Valeska Wegner, Daniel Hoffmann, Melissa Kennedy, Ralf P Richter, Georg Steffes, Kay Grobe
Hedgehog is relayed through dynamic heparan sulfate interactions to shape its gradient. Nature communications 14 (1) (2023)
Fabian Gude, Jurij Froese, Dominique Manikowski, Daniele Di Iorio, Jean-Noël Grad, Seraphine Valeska Wegner, Daniel Hoffmann, Melissa Kennedy, Ralf P Richter, Georg Steffes, Kay Grobe
Hedgehog is relayed through dynamic heparan sulfate interactions to shape its gradient. Nature communications 14 (1) (2023)
Fabian Gude, Jurij Froese, Dominique Manikowski, Daniele Di Iorio, Jean-Noël Grad, Seraphine Valeska Wegner, Daniel Hoffmann, Melissa Kennedy, Ralf P Richter, Georg Steffes, Kay Grobe
Hedgehog is relayed through dynamic heparan sulfate interactions to shape its gradient. Nature communications 14 (1) (2023)
Alexander Höing, Robin Struth, Christine Beuck, Neda Rafieiolhosseini, Daniel Hoffmann, Roland H Stauber, Peter Bayer, Jochen Niemeyer, Shirley K Knauer
Dual activity inhibition of threonine aspartase 1 by a single bisphosphate ligand. RSC advances 12 (53) (2022)
Daniel Habermann, Hadi Kharimzadeh, Andreas Walker, Yang Li, Rongge Yang, Rolf Kaiser, Zabrina L Brumme, Jörg Timm, Michael Roggendorf, Daniel Hoffmann
HAMdetector: a Bayesian regression model that integrates information to detect HLA-associated mutations. Bioinformatics (Oxford, England) 38 (9) (2022)
Alexander Höing, Robin Struth, Christine Beuck, Neda Rafieiolhosseini, Daniel Hoffmann, Roland H Stauber, Peter Bayer, Jochen Niemeyer, Shirley K Knauer
Dual activity inhibition of threonine aspartase 1 by a single bisphosphate ligand. RSC advances 12 (53) (2022)
Neda Rafieiolhosseini, Matthias Killa, Thorben Neumann, Niklas Tötsch, Jean-Noël Grad, Alexander Höing, Thies Dirksmeyer, Jochen Niemeyer, Christian Ottmann, Shirley K Knauer, Michael Giese, Jens Voskuhl, Daniel Hoffmann
Computational model predicts protein binding sites of a luminescent ligand equipped with guanidiniocarbonyl-pyrrole groups. Beilstein journal of organic chemistry 18 (2022)
Manuela Wuelling, Christoph Neu, Andrea M Thiesen, Simo Kitanovski, Yingying Cao, Anja Lange, Astrid M Westendorf, Daniel Hoffmann, Andrea Vortkamp
Epigenetic Mechanisms Mediating Cell State Transitions in Chondrocytes. Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research 36 (5) (2021)
Annika Meiners, Sandra Bäcker, Inesa Hadrović, Christian Heid, Christine Beuck, Yasser B Ruiz-Blanco, Joel Mieres Perez, Marius Pörschke, Jean-Noël Grad, Cecilia Vallet, Daniel Hoffmann, Peter Bayer, Elsa Sanchez-Garcia, Thomas Schrader, Shirley K Knauer
Specific inhibition of the Survivin-CRM1 interaction by peptide-modified molecular tweezers. Nature communications 12 (1) (2021)
Bettina Budeus, Artur Kibler, Martina Brauser, Ekaterina Homp, Kevin Bronischewski, Jean Alexander Ross, Andre Görgens, Marc A Weniger, Josefine Dunst, Taras Kreslavsky, Symone Vitoriano da Conceição Castro, Florian Murke, Christopher C Oakes, Peter Rusch, Dimitrios Andrikos, Peter Kern, Angela Köninger, Monika Lindemann, Patricia Johansson, Wiebke Hansen, Anna-Carin Lundell, Anna Rudin, Jan Dürig, Bernd Giebel, Daniel Hoffmann, Ralf Küppers, Marc Seifert
Human Cord Blood B Cells Differ from the Adult Counterpart by Conserved Ig Repertoires and Accelerated Response Dynamics. Journal of immunology (Baltimore, Md. : 1950) (2021)
Jan Gravemeyer, Ivelina Spassova, Monique E Verhaegen, Andrzej A Dlugosz, Daniel Hoffmann, Anja Lange, Jürgen Christian Becker
DNA-methylation patterns imply a common cellular origin of virus- and UV-associated Merkel cell carcinoma. Oncogene (2021)
Niklas Tötsch, Daniel Hoffmann
Classifier uncertainty: evidence, potential impact, and probabilistic treatment. PeerJ. Computer science 7 (2021)
Yingying Cao, Simo Kitanovski, Ralf Küppers, Daniel Hoffmann
UMI or not UMI, that is the question for scRNA-seq zero-inflation. Nature biotechnology 39 (2) (2021)
Daniel Smolin, Niklas Tötsch, Jean-Noël Grad, Jürgen Linders, Farnusch Kaschani, Markus Kaiser, Michael Kirsch, Daniel Hoffmann, Thomas Schrader
Accelerated trypsin autolysis by affinity polymer templates. RSC advances 10 (48) (2020)
Ivelina Spassova, Selma Ugurel, Patrick Terheyden, Antje Sucker, Jessica C Hassel, Cathrin Ritter, Linda Kubat, Daniel Habermann, Farnoush Farahpour, Mohammadkarim Saeedghalati, Lukas Peiffer, Rajiv Kumar, David Schrama, Daniel Hoffmann, Dirk Schadendorf, Jürgen Christian Becker
Predominance of Central Memory T Cells with High T-Cell Receptor Repertoire Diversity is Associated with Response to PD-1/PD-L1 Inhibition in Merkel Cell Carcinoma. Clinical cancer research : an official journal of the American Association for Cancer Research 26 (9) (2020)
Li Yang, Feifei Liu, Xiankun Tong, Daniel Hoffmann, Jianping Zuo, Mengji Lu
Treatment of Chronic Hepatitis B Virus Infection Using Small Molecule Modulators of Nucleocapsid Assembly: Recent Advances and Perspectives. ACS infectious diseases 5 (5) (2019)
Nadine Schroeder, Manuela Wuelling, Daniel Hoffmann, Beate Brand-Saberi, Andrea Vortkamp
Atoh8 acts as a regulator of chondrocyte proliferation and differentiation in endochondral bones. PloS one 14 (8) (2019)
Farnoush Farahpour, Mohammadkarim Saeedghalati, Verena S Brauer, Daniel Hoffmann
Trade-off shapes diversity in eco-evolutionary dynamics. eLife 7 (2018)
Jean-Noël Grad, Alba Gigante, Christoph Wilms, Jan Nikolaj Dybowski, Ludwig Ohl, Christian Ottmann, Carsten Schmuck, Daniel Hoffmann
Locating Large, Flexible Ligands on Proteins. Journal of chemical information and modeling 58 (2) (2018)
Sabine Schürmann, Georg Steffes, Dominique Manikowski, Philipp Kastl, Ursula Malkus, Shyam Bandari, Stefanie Ohlig, Corinna Ortmann, Rocio Rebollido-Rios, Mandy Otto, Harald Nüsse, Daniel Hoffmann, Christian Klämbt, Milos Galic, Jürgen Klingauf, Kay Grobe
Proteolytic processing of palmitoylated Hedgehog peptides specifies the 3-4 intervein region of the Drosophila wing. eLife 7 (2018)
Petra Jakobs, Philipp Schulz, Sabine Schürmann, Stephan Niland, Sebastian Exner, Rocio Rebollido-Rios, Dominique Manikowski, Daniel Hoffmann, Daniela G Seidler, Kay Grobe
Ca2+ coordination controls sonic hedgehog structure and its Scube2-regulated release. Journal of cell science 130 (19) (2017)
Mike Nemec, Daniel Hoffmann
Quantitative Assessment of Molecular Dynamics Sampling for Flexible Systems. Journal of chemical theory and computation 13 (2) (2017)
Mohammadkarim Saeedghalati, Farnoush Farahpour, Bettina Budeus, Anja Lange, Astrid M Westendorf, Marc Seifert, Ralf Küppers, Daniel Hoffmann
Quantitative Comparison of Abundance Structures of Generalized Communities: From B-Cell Receptor Repertoires to Microbiomes. PLoS computational biology 13 (1) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Daniel Hoffmann