David Bednář (David Bednar)

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 17

Top Topics

Drug Administration

Protein Protein

Machine Learning

Top Venues

Nucleic acids research

Briefings in bioinformatics

This page only lists publications with an associated author ORCID identifier.

Publications

Sérgio M Marques, Petr Kouba, Anthony Legrand, Jiri Sedlar, Lucas Disson, Joan Planas-Iglesias, Zainab Sanusi, Antonin Kunka, Jiří Damborský, Tomas Pajdla, Zbynek Prokop, Stanislav Mazurenko, Josef Sivic, David Bednář
CoVAMPnet: Comparative Markov State Analysis for Studying Effects of Drug Candidates on Disordered Biomolecules. JACS Au 4 (6) (2024)
Joan Planas-Iglesias, Simeon Borko, Jan Swiatkowski, Matej Elias, Martin Havlasek, Ondrej Salamon, Ekaterina Grakova, Antonín Kunka, Tomas Martinovic, Jiří Damborský, Jan Martinovic, David Bednář
AggreProt: a web server for predicting and engineering aggregation prone regions in proteins. Nucleic acids research 52 (W1) (2024)
Sérgio M Marques, Petr Kouba, Anthony Legrand, Jiri Sedlar, Lucas Disson, Joan Planas-Iglesias, Zainab Sanusi, Antonin Kunka, Jiří Damborský, Tomas Pajdla, Zbynek Prokop, Stanislav Mazurenko, Josef Sivic, David Bednář
CoVAMPnet: Comparative Markov State Analysis for Studying Effects of Drug Candidates on Disordered Biomolecules. JACS Au 4 (6) (2024)
Joan Planas-Iglesias, Simeon Borko, Jan Swiatkowski, Matej Elias, Martin Havlasek, Ondrej Salamon, Ekaterina Grakova, Antonín Kunka, Tomas Martinovic, Jiří Damborský, Jan Martinovic, David Bednář
AggreProt: a web server for predicting and engineering aggregation prone regions in proteins. Nucleic acids research 52 (W1) (2024)
Joan Planas-Iglesias, Simeon Borko, Jan Swiatkowski, Matej Elias, Martin Havlasek, Ondrej Salamon, Ekaterina Grakova, Antonín Kunka, Tomas Martinovic, Jiří Damborský, Jan Martinovic, David Bednář
AggreProt: a web server for predicting and engineering aggregation prone regions in proteins. Nucleic acids research (2024)
Jan Stourac, Simeon Borko, Rayyan T Khan, Petra Pokorna, Adam Dobias, Joan Planas-Iglesias, Stanislav Mazurenko, Gaspar Pinto, Veronika Szotkowska, Jaroslav Sterba, Ondrej Slaby, Jiri Damborsky, David Bednář
PredictONCO: a web tool supporting decision-making in precision oncology by extending the bioinformatics predictions with advanced computing and machine learning. Briefings in bioinformatics 25 (1) (2023)
Karolina Snajdarova, Sérgio M Marques, Jiri Damborsky, David Bednář, Martin Marek
Atypical homodimerization revealed by the structure of the (S)-enantioselective haloalkane dehalogenase DmmarA from Mycobacterium marinum. Acta crystallographica. Section D, Structural biology (2023)
Michal Nemergut, Daniel Pluskal, Jana Horackova, Tereza Sustrova, Jan Tulis, Tomas Barta, Racha Baatallah, Glwadys Gagnot, Veronika Novakova, Marika Majerova, Karolina Sedlackova, Sergio M Marques, Martin Toul, Jiří Damborský, Zbynek Prokop, David Bednář, Yves L Janin, Martin Marek
Illuminating the mechanism and allosteric behavior of NanoLuc luciferase. Nature communications 14 (1) (2023)
Anna Špačková, Ondřej Vávra, Tomáš Raček, Václav Bazgier, David Sehnal, Jiří Damborský, Radka Svobodová, David Bednář, Karel Berka
ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era. Nucleic acids research (2023)
Jan Stourac, Simeon Borko, Rayyan T Khan, Petra Pokorna, Adam Dobias, Joan Planas-Iglesias, Stanislav Mazurenko, Gaspar Pinto, Veronika Szotkowska, Jaroslav Sterba, Ondrej Slaby, Jiri Damborsky, David Bednář
PredictONCO: a web tool supporting decision-making in precision oncology by extending the bioinformatics predictions with advanced computing and machine learning. Briefings in bioinformatics 25 (1) (2023)
Jan Stourac, Simeon Borko, Rayyan T Khan, Petra Pokorna, Adam Dobias, Joan Planas-Iglesias, Stanislav Mazurenko, Gaspar Pinto, Veronika Szotkowska, Jaroslav Sterba, Ondrej Slaby, Jiri Damborsky, David Bednář
PredictONCO: a web tool supporting decision-making in precision oncology by extending the bioinformatics predictions with advanced computing and machine learning. Briefings in bioinformatics 25 (1) (2023)
Milos Musil, Andrej Jezik, Jana Horackova, Simeon Borko, Petr Kabourek, Jiří Damborský, David Bednář
FireProt 2.0: web-based platform for the fully automated design of thermostable proteins. Briefings in bioinformatics 25 (1) (2023)
Martin Toul, Jan Mican, Veronika Slonkova, Dmitri Nikitin, Martin Marek, David Bednář, Jiří Damborský, Zbynek Prokop
Hidden Potential of Highly Efficient and Widely Accessible Thrombolytic Staphylokinase. Stroke 53 (10) (2022)
Marcel Zámocký, Miloš Musil, Maksym Danchenko, Peter Ferianc, Katarína Chovanová, Peter Baráth, Andrej Poljovka, David Bednář
Deep Insights into the Specific Evolution of Fungal Hybrid B Heme Peroxidases. Biology 11 (3) (2022)
Joan Planas-Iglesias, Filip Opaleny, Pavol Ulbrich, Jan Stourac, Zainab Sanusi, Gaspar P Pinto, Andrea Schenkmayerova, Jan Byska, Jiří Damborský, Barbora Kozlikova, David Bednář
LoopGrafter: a web tool for transplanting dynamical loops for protein engineering. Nucleic acids research (2022)
Sergio M Marques, Lucie Šupolíková, Lenka Molčanová, Karel Šmejkal, David Bednář, Iva Slaninová
Screening of Natural Compounds as P-Glycoprotein Inhibitors against Multidrug Resistance. Biomedicines 9 (4) (2021)
Piia Kokkonen, Andy Beier, Stanislav Mazurenko, Jiří Damborský, David Bednář, Zbynek Prokop
Substrate inhibition by the blockage of product release and its control by tunnel engineering. RSC chemical biology 2 (2) (2021)