Radka Svobodová

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 11

Top Topics

Machine Learning

Binding Protein

Electron Microscopy

Top Venues

Nucleic acids research

Journal of cheminformatics

Bioinformatics (Oxford, England)

This page only lists publications with an associated author ORCID identifier.

Publications

David Procházka, Terézia Slanináková, Jaroslav Olha, Adrián Rošinec, Katarína Grešová, Miriama Jánošová, Jakub Čillík, Jana Porubská, Radka Svobodová, Vlastislav Dohnal, Matej Antol
AlphaFind: discover structure similarity across the proteome in AlphaFold DB. Nucleic acids research 52 (W1) (2024)
David Procházka, Terézia Slanináková, Jaroslav Olha, Adrián Rošinec, Katarína Grešová, Miriama Jánošová, Jakub Čillík, Jana Porubská, Radka Svobodová, Vlastislav Dohnal, Matej Antol
AlphaFind: discover structure similarity across the proteome in AlphaFold DB. Nucleic acids research 52 (W1) (2024)
David Procházka, Terézia Slanináková, Jaroslav Olha, Adrián Rošinec, Katarína Grešová, Miriama Jánošová, Jakub Čillík, Jana Porubská, Radka Svobodová, Vlastislav Dohnal, Matej Antol
AlphaFind: discover structure similarity across the proteome in AlphaFold DB. Nucleic acids research (2024)
David Procházka, Terézia Slanináková, Jaroslav Olha, Adrián Rošinec, Katarína Grešová, Miriama Jánošová, Jakub Čillík, Jana Porubská, Radka Svobodová, Vlastislav Dohnal, Matej Antol
AlphaFind: discover structure similarity across the proteome in AlphaFold DB. Nucleic acids research 52 (W1) (2024)
Anna Špačková, Ondřej Vávra, Tomáš Raček, Václav Bazgier, David Sehnal, Jiří Damborský, Radka Svobodová, David Bednář, Karel Berka
ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era. Nucleic acids research (2023)
Aliaksei Chareshneu, Adam Midlik, Crina-Maria Ionescu, Alexander Rose, Vladimír Horský, Alessio Cantara, Radka Svobodová, Karel Berka, David Sehnal
Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations. Nucleic acids research (2023)
Ondřej Schindler, Karel Berka, Alessio Cantara, Aleš Křenek, Dominik Tichý, Tomáš Raček, Radka Svobodová
αCharges: partial atomic charges for AlphaFold structures in high quality. Nucleic acids research (2023)
Adam Midlik, Ivana Hutařová Vařeková, Jan Hutař, Aliaksei Chareshneu, Karel Berka, Radka Svobodová
OverProt: secondary structure consensus for protein families. Bioinformatics (Oxford, England) 38 (14) (2022)
Ondřej Schindler, Tomáš Raček, Aleksandra Maršavelski, Jaroslav Koča, Karel Berka, Radka Svobodová
Optimized SQE atomic charges for peptides accessible via a web application. Journal of cheminformatics 13 (1) (2021)
Ondřej Schindler, Tomáš Raček, Aleksandra Maršavelski, Jaroslav Koča, Karel Berka, Radka Svobodová
Correction to: Optimized SQE atomic charges for peptides accessible via a web application. Journal of cheminformatics 13 (1) (2021)
David Sehnal, Sebastian Bittrich, Mandar S Deshpande, Radka Svobodová, Karel Berka, Václav Bazgier, Sameer Velankar, Stephen K Burley, Jaroslav Koča, Alexander S Rose
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures. Nucleic acids research 49 (W1) (2021)