David Holcman (D Holcman)

Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 30

Top Venues

Science advances

PLoS computational biology

PloS one

Journal of mathematical biology

ENS

Université Pierre et Marie Curie (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

ENS Sep 13 2007

France

Director of Research, Group leader :: Computational Biology

University of Oxford

United Kingdom

Professor :: Applied Mathematics

Education History

Université Pierre et Marie Curie Oct 01 1995 - Jun 06 1998

France

PHD :: Mathematics

Publications

Andrea Papale, David Holcman
Chromatin phase separated nanoregions explored by polymer cross-linker models and reconstructed from single particle trajectories. PLoS computational biology 20 (1) (2024)
Andrea Papale, David Holcman
Chromatin phase separated nanoregions explored by polymer cross-linker models and reconstructed from single particle trajectories. PLoS computational biology 20 (1) (2024)
Andrea Papale, David Holcman
Chromatin phase separated nanoregions explored by polymer cross-linker models and reconstructed from single particle trajectories. PLoS computational biology 20 (1) (2024)
Frédéric Paquin-Lefebvre, David Holcman
Voltage mapping in subcellular nanodomains using electro-diffusion modeling. The Journal of chemical physics 161 (3) (2024)
Andrea Papale, David Holcman
Chromatin phase separated nanoregions explored by polymer cross-linker models and reconstructed from single particle trajectories. PLoS computational biology 20 (1) (2024)
Jürgen Reingruber, Andrea Papale, Stéphane Ruckly, Jean-Francois Timsit, David Holcman
Data-driven multiscale dynamical framework to control a pandemic evolution with non-pharmaceutical interventions. PloS one 18 (1) (2023)
Jürgen Reingruber, Andrea Papale, Stéphane Ruckly, Jean-Francois Timsit, David Holcman
Data-driven multiscale dynamical framework to control a pandemic evolution with non-pharmaceutical interventions. PloS one 18 (1) (2023)
Jürgen Reingruber, Andrea Papale, Stéphane Ruckly, Jean-Francois Timsit, David Holcman
Data-driven multiscale dynamical framework to control a pandemic evolution with non-pharmaceutical interventions. PloS one 18 (1) (2023)
Tina Ghelani, Marc Escher, Ulrich Thomas, Klara Esch, Janine Lützkendorf, Harald Depner, Marta Maglione, Pierre Parutto, Scott J Gratz, Tanja Matkovic-Rachid, Stefanie Ryglewski, Alexander M Walter, David Holcman, Kate M Oâ Connor-Giles, Martin Heine, Stephan J Sigrist
Interactive nanocluster compaction of the ELKS scaffold and Cacophony Ca 2+ channels drives sustained active zone potentiation. Science advances 9 (7) (2023)
Srinjan Basu, O Shukron, Dominic Hall, Pierre Parutto, Aleks Ponjavic, D Shah, W Boucher, David Lando, W Zhang, N Reynolds, L H Sober, A Jartseva, Ramy Ragheb, X Ma, Julie Cramard, R Floyd, J Balmer, T A Drury, A R Carr, Lisa-Maria Needham, A Aubert, G Communie, K Gor, M Steindel, Lluis Morey, Enrique Blanco, Till Bartke, Luciano Di Croce, Imre Berger, Christiane Schaffitzel, Steven F Lee, Tim J Stevens, David Klenerman, Brian Hendrich, David Holcman, Ernest D Laue
Publisher Correction: Live-cell three-dimensional single-molecule tracking reveals modulation of enhancer dynamics by NuRD. Nature structural & molecular biology (2023)
Jürgen Reingruber, Andrea Papale, Stéphane Ruckly, Jean-Francois Timsit, David Holcman
Data-driven multiscale dynamical framework to control a pandemic evolution with non-pharmaceutical interventions. PloS one 18 (1) (2023)
Srinjan Basu, O Shukron, Dominic Hall, Pierre Parutto, Aleks Ponjavic, D Shah, W Boucher, David Lando, W Zhang, N Reynolds, L H Sober, A Jartseva, Ramy Ragheb, X Ma, Julie Cramard, R Floyd, J Balmer, T A Drury, A R Carr, Lisa-Maria Needham, A Aubert, G Communie, K Gor, M Steindel, Lluis Morey, Enrique Blanco, Till Bartke, Luciano Di Croce, Imre Berger, Christiane Schaffitzel, Steven F Lee, Tim J Stevens, David Klenerman, Brian Hendrich, David Holcman, Ernest D Laue
Live-cell three-dimensional single-molecule tracking reveals modulation of enhancer dynamics by NuRD. Nature structural & molecular biology (2023)
Tina Ghelani, Marc Escher, Ulrich Thomas, Klara Esch, Janine Lützkendorf, Harald Depner, Marta Maglione, Pierre Parutto, Scott J Gratz, Tanja Matkovic-Rachid, Stefanie Ryglewski, Alexander M Walter, David Holcman, Kate M Oâ Connor-Giles, Martin Heine, Stephan J Sigrist
Interactive nanocluster compaction of the ELKS scaffold and Cacophony Ca 2+ channels drives sustained active zone potentiation. Science advances 9 (7) (2023)
Tina Ghelani, Marc Escher, Ulrich Thomas, Klara Esch, Janine Lützkendorf, Harald Depner, Marta Maglione, Pierre Parutto, Scott J Gratz, Tanja Matkovic-Rachid, Stefanie Ryglewski, Alexander M Walter, David Holcman, Kate M Oâ Connor-Giles, Martin Heine, Stephan J Sigrist
Interactive nanocluster compaction of the ELKS scaffold and Cacophony Ca 2+ channels drives sustained active zone potentiation. Science advances 9 (7) (2023)
Tina Ghelani, Marc Escher, Ulrich Thomas, Klara Esch, Janine Lützkendorf, Harald Depner, Marta Maglione, Pierre Parutto, Scott J Gratz, Tanja Matkovic-Rachid, Stefanie Ryglewski, Alexander M Walter, David Holcman, Kate M Oâ Connor-Giles, Martin Heine, Stephan J Sigrist
Interactive nanocluster compaction of the ELKS scaffold and Cacophony Ca 2+ channels drives sustained active zone potentiation. Science advances 9 (7) (2023)
Jürgen Reingruber, Andrea Papale, Stéphane Ruckly, Jean-Francois Timsit, David Holcman
Data-driven multiscale dynamical framework to control a pandemic evolution with non-pharmaceutical interventions. PloS one 18 (1) (2023)
Tina Ghelani, Marc Escher, Ulrich Thomas, Klara Esch, Janine Lützkendorf, Harald Depner, Marta Maglione, Pierre Parutto, Scott J Gratz, Tanja Matkovic-Rachid, Stefanie Ryglewski, Alexander M Walter, David Holcman, Kate M Oâ Connor-Giles, Martin Heine, Stephan J Sigrist
Interactive nanocluster compaction of the ELKS scaffold and Cacophony Ca 2+ channels drives sustained active zone potentiation. Science advances 9 (7) (2023)
Ulrich Dobramysl, David Holcman
Computational methods and diffusion theory in triangulation sensing to model neuronal navigation. Reports on progress in physics. Physical Society (Great Britain) 85 (10) (2022)
A Tricot, I M Sokolov, David Holcman
Modeling the voltage distribution in a non-locally but globally electroneutral confined electrolyte medium: applications for nanophysiology. Journal of mathematical biology 82 (7) (2021)
Kanishka Basnayake, David Mazaud, Liliia Kushnireva, Alexis Pierre Bemelmans, Nathalie Rouach, Eduard Korkotian, David Holcman
Nanoscale molecular architecture controls calcium diffusion and ER replenishment in dendritic spines. Science advances 7 (38) (2021)
Andrea Papale, David Holcman
Chromatin stability generated by stochastic binding and unbinding of cross-linkers at looping sites revealed by Markov models. Physical biology 18 (4) (2021)
Lou Zonca, David Holcman
Emergence and fragmentation of the alpha-band driven by neuronal network dynamics. PLoS computational biology 17 (12) (2021)
David Holcman, Rafael Yuste
Reply to 'Only negligible deviations from electroneutrality are expected in dendritic spines'. Nature reviews. Neuroscience 21 (1) (2020)
Kanishka Basnayake, David Holcman
Extreme escape from a cusp: When does geometry matter for the fastest Brownian particles moving in crowded cellular environments? The Journal of chemical physics 152 (13) (2020)
Kanishka Basnayake, David Mazaud, Alexis Bemelmans, Nathalie Rouach, Eduard Korkotian, David Holcman
Fast calcium transients in dendritic spines driven by extreme statistics. PLoS biology 17 (6) (2019)
J Cartailler, David Holcman
Steady-state voltage distribution in three-dimensional cusp-shaped funnels modeled by PNP. Journal of mathematical biology 79 (1) (2019)
Jérôme Cartailler, Pierre Parutto, Cyril Touchard, Fabrice Vallée, David Holcman
Alpha rhythm collapse predicts iso-electric suppressions during anesthesia. Communications biology 2 (2019)
O Shukron, Vincent Piras, Daan Noordermeer, David Holcman
Statistics of chromatin organization during cell differentiation revealed by heterogeneous cross-linked polymers. Nature communications 10 (1) (2019)
David Holcman, Pierre Parutto, Joseph E Chambers, Marcus Fantham, Laurence J Young, Stefan J Marciniak, Clemens F Kaminski, David Ron, Edward Avezov
Single particle trajectories reveal active endoplasmic reticulum luminal flow. Nature cell biology 20 (10) (2018)
Ofir Shukron, David Holcman
Transient chromatin properties revealed by polymer models and stochastic simulations constructed from Chromosomal Capture data. PLoS computational biology 13 (4) (2017)

David Holcman.css-eqlu8i{font-size:small;padding-left:4px;} (D Holcman)

Publication Activity (10 Years)

Top Topics

Top Venues

David Holcman (D Holcman)