David R Johnson (David Johnson)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 18

Top Topics

Escherichia Coli

Antimicrobial Resistance

Wastewater Treatment

Top Venues

The ISME journal

Nature communications

ISME communications

Environmental microbiology

This page only lists publications with an associated author ORCID identifier.

Publications

Chujin Ruan, Josep Ramoneda, Anton Kan, Timothy J Rudge, Gang Wang, David R Johnson
Phage predation accelerates the spread of plasmid-encoded antibiotic resistance. Nature communications 15 (1) (2024)
Chujin Ruan, Josep Ramoneda, Anton Kan, Timothy J Rudge, Gang Wang, David R Johnson
Phage predation accelerates the spread of plasmid-encoded antibiotic resistance. Nature communications 15 (1) (2024)
Chujin Ruan, Josep Ramoneda, Anton Kan, Timothy J Rudge, Gang Wang, David R Johnson
Phage predation accelerates the spread of plasmid-encoded antibiotic resistance. Nature communications 15 (1) (2024)
Chujin Ruan, Benedict Borer, Josep Ramoneda, Gang Wang, David R Johnson
Evaporation-induced hydrodynamics control plasmid transfer during surface-associated microbial growth. NPJ biofilms and microbiomes 9 (1) (2023)
Yinyin Ma, Josep Ramoneda, David R Johnson
Timing of antibiotic administration determines the spread of plasmid-encoded antibiotic resistance during microbial range expansion. Nature communications 14 (1) (2023)
Kohei Takahashi, Mamoru Oshiki, Chujin Ruan, Kana Morinaga, Masanori Toyofuku, Nobuhiko Nomura, David R Johnson
Denitrification in low oxic environments increases the accumulation of nitrogen oxide intermediates and modulates the evolutionary potential of microbial populations. Environmental microbiology reports (2023)
Zhan-Biao Ge, Zhi-Qiang Zhai, Wan-Ying Xie, Jun Dai, Ke Huang, David R Johnson, Fang-Jie Zhao, Peng Wang
Two-tiered mutualism improves survival and competitiveness of cross-feeding soil bacteria. The ISME journal (2023)
Davide Ciccarese, Gabriele Micali, Benedict Borer, Chujin Ruan, Dani Or, David R Johnson
Rare and localized events stabilize microbial community composition and patterns of spatial self-organization in a fluctuating environment. The ISME journal 16 (5) (2022)
Jan Dolinšek, Josep Ramoneda, David R Johnson
Initial community composition determines the long-term dynamics of a microbial cross-feeding interaction by modulating niche availability. ISME communications 2 (1) (2022)
Chujin Ruan, Josep Ramoneda, Guowei Chen, David R Johnson, Gang Wang
Evaporation-induced hydrodynamics promote conjugation-mediated plasmid transfer in microbial populations. ISME communications 1 (1) (2021)
Manupriyam Dubey, Noushin Hadadi, Serge Pelet, Nicolas Carraro, David R Johnson, Jan Roelof Van der Meer
Environmental connectivity controls diversity in soil microbial communities. Communications biology 4 (1) (2021)
Felix Goldschmidt, Lea Caduff, David R Johnson
Causes and consequences of pattern diversification in a spatially self-organizing microbial community. The ISME journal 15 (8) (2021)
Benedict Borer, Davide Ciccarese, David R Johnson, Dani Or
Spatial organization in microbial range expansion emerges from trophic dependencies and successful lineages. Communications biology 3 (1) (2020)
David R Johnson, Francesco Pomati
A brief guide for the measurement and interpretation of microbial functional diversity. Environmental microbiology 22 (8) (2020)
Cresten B Mansfeldt, Stefan Achermann, Yujie Men, Jean-Claude Walser, Kris Villez, Adriano Joss, David R Johnson, Kathrin Fenner
Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities. The ISME journal 13 (6) (2019)
Elin E Lilja, David R Johnson
Substrate cross-feeding affects the speed and trajectory of molecular evolution within a synthetic microbial assemblage. BMC evolutionary biology 19 (1) (2019)
Feng Ju, Karin Beck, Xiaole Yin, Andreas Maccagnan, Christa S McArdell, Heinz P Singer, David R Johnson, Tong Zhang, Helmut Bürgmann
Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes. The ISME journal 13 (2) (2018)
Deborah Patsch, Simon van Vliet, Lorenzo Garbani Marcantini, David R Johnson
Generality of associations between biological richness and the rates of metabolic processes across microbial communities. Environmental microbiology 20 (12) (2018)