Davis J McCarthy (Davis McCarthy)

ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 29

Top Venues

Nature genetics

Genome biology

Nature communications

GigaByte (Hong Kong, China)

University of Melbourne

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Melbourne Dec 10 2018

Australia

Holyoake Research Fellow :: Melbourne Integrative Genomics

St Vincent's Institute of Medical Research Dec 10 2018

Australia

Lab Head :: Bioinformatics & Cellular Genomics

EMBL-EBI

United Kingdom

Visiting postdoctoral fellow :: Statistical Genomics

Walter and Eliza Hall Institute of Medical Research

Australia

Research Technician :: Bioinformatics Division

Publications

Heini M Natri, Christina B Del Azodi, Lance Peter, Chase J Taylor, Sagrika Chugh, Robert Kendle, Mei-I Chung, David K Flaherty, Brittany K Matlock, Carla L Calvi, Timothy S Blackwell, Lorraine B Ware, Matthew D Bacchetta, Rajat Walia, Ciara M Shaver, Jonathan A Kropski, Davis J McCarthy, Nicholas E Banovich
Cell-type-specific and disease-associated expression quantitative trait loci in the human lung. Nature genetics (2024)
Jeffrey M Pullin, Davis J McCarthy
A comparison of marker gene selection methods for single-cell RNA sequencing data. Genome biology 25 (1) (2024)
Heini M Natri, Christina B Del Azodi, Lance Peter, Chase J Taylor, Sagrika Chugh, Robert Kendle, Mei-I Chung, David K Flaherty, Brittany K Matlock, Carla L Calvi, Timothy S Blackwell, Lorraine B Ware, Matthew D Bacchetta, Rajat Walia, Ciara M Shaver, Jonathan A Kropski, Davis J McCarthy, Nicholas E Banovich
Cell-type-specific and disease-associated expression quantitative trait loci in the human lung. Nature genetics 56 (4) (2024)
Heini M Natri, Christina B Del Azodi, Lance Peter, Chase J Taylor, Sagrika Chugh, Robert Kendle, Mei-I Chung, David K Flaherty, Brittany K Matlock, Carla L Calvi, Timothy S Blackwell, Lorraine B Ware, Matthew D Bacchetta, Rajat Walia, Ciara M Shaver, Jonathan A Kropski, Davis J McCarthy, Nicholas E Banovich
Cell-type-specific and disease-associated expression quantitative trait loci in the human lung. Nature genetics 56 (4) (2024)
Heini M Natri, Christina B Del Azodi, Lance Peter, Chase J Taylor, Sagrika Chugh, Robert Kendle, Mei-I Chung, David K Flaherty, Brittany K Matlock, Carla L Calvi, Timothy S Blackwell, Lorraine B Ware, Matthew D Bacchetta, Rajat Walia, Ciara M Shaver, Jonathan A Kropski, Davis J McCarthy, Nicholas E Banovich
Cell-type-specific and disease-associated expression quantitative trait loci in the human lung. Nature genetics 56 (4) (2024)
Jeffrey M Pullin, Davis J McCarthy
A comparison of marker gene selection methods for single-cell RNA sequencing data. Genome biology 25 (1) (2024)
Heini M Natri, Christina B Del Azodi, Lance Peter, Chase J Taylor, Sagrika Chugh, Robert Kendle, Mei-I Chung, David K Flaherty, Brittany K Matlock, Carla L Calvi, Timothy S Blackwell, Lorraine B Ware, Matthew D Bacchetta, Rajat Walia, Ciara M Shaver, Jonathan A Kropski, Davis J McCarthy, Nicholas E Banovich
Cell-type-specific and disease-associated expression quantitative trait loci in the human lung. Nature genetics (2024)
Heini M Natri, Christina B Del Azodi, Lance Peter, Chase J Taylor, Sagrika Chugh, Robert Kendle, Mei-I Chung, David K Flaherty, Brittany K Matlock, Carla L Calvi, Timothy S Blackwell, Lorraine B Ware, Matthew D Bacchetta, Rajat Walia, Ciara M Shaver, Jonathan A Kropski, Davis J McCarthy, Nicholas E Banovich
Cell-type-specific and disease-associated expression quantitative trait loci in the human lung. Nature genetics (2024)
Jeffrey M Pullin, Davis J McCarthy
A comparison of marker gene selection methods for single-cell RNA sequencing data. Genome biology 25 (1) (2024)
Helen M L Frazer, Carlos A Peña-Solórzano, Chun Fung Kwok, Michael S Elliott, Yuanhong Chen, Chong Wang, null null, Jocelyn F Lippey, John L Hopper, Peter Brotchie, Gustavo Carneiro, Davis J McCarthy
Comparison of AI-integrated pathways with human-AI interaction in population mammographic screening for breast cancer. Nature communications 15 (1) (2024)
Helen M L Frazer, Carlos A Peña-Solórzano, Chun Fung Kwok, Michael S Elliott, Yuanhong Chen, Chong Wang, null null, Jocelyn F Lippey, John L Hopper, Peter Brotchie, Gustavo Carneiro, Davis J McCarthy
Comparison of AI-integrated pathways with human-AI interaction in population mammographic screening for breast cancer. Nature communications 15 (1) (2024)
Jeffrey M Pullin, Davis J McCarthy
A comparison of marker gene selection methods for single-cell RNA sequencing data. Genome biology 25 (1) (2024)
Neke Ibeh, Charles Y Feigin, Stephen R Frankenberg, Davis J McCarthy, Andrew J Pask, Irene Gallego Romero
De novo transcriptome assembly and genome annotation of the fat-tailed dunnart ( Sminthopsis crassicaudata ). GigaByte (Hong Kong, China) 2024 (2024)
Neke Ibeh, Charles Y Feigin, Stephen R Frankenberg, Davis J McCarthy, Andrew J Pask, Irene Gallego Romero
De novo transcriptome assembly and genome annotation of the fat-tailed dunnart ( Sminthopsis crassicaudata ). GigaByte (Hong Kong, China) 2024 (2024)
Heini M Natri, Christina B Del Azodi, Lance Peter, Chase J Taylor, Sagrika Chugh, Robert Kendle, Mei-I Chung, David K Flaherty, Brittany K Matlock, Carla L Calvi, Timothy S Blackwell, Lorraine B Ware, Matthew D Bacchetta, Rajat Walia, Ciara M Shaver, Jonathan A Kropski, Davis J McCarthy, Nicholas E Banovich
Cell-type-specific and disease-associated expression quantitative trait loci in the human lung. Nature genetics 56 (4) (2024)
Heini M Natri, Christina B Del Azodi, Lance Peter, Chase J Taylor, Sagrika Chugh, Robert Kendle, Mei-I Chung, David K Flaherty, Brittany K Matlock, Carla L Calvi, Timothy S Blackwell, Lorraine B Ware, Matthew D Bacchetta, Rajat Walia, Ciara M Shaver, Jonathan A Kropski, Davis J McCarthy, Nicholas E Banovich
Author Correction: Cell-type-specific and disease-associated expression quantitative trait loci in the human lung. Nature genetics (2024)
Heini M Natri, Christina B Del Azodi, Lance Peter, Chase J Taylor, Sagrika Chugh, Robert Kendle, Mei-I Chung, David K Flaherty, Brittany K Matlock, Carla L Calvi, Timothy S Blackwell, Lorraine B Ware, Matthew D Bacchetta, Rajat Walia, Ciara M Shaver, Jonathan A Kropski, Davis J McCarthy, Nicholas E Banovich
Cell-type-specific and disease-associated expression quantitative trait loci in the human lung. Nature genetics 56 (4) (2024)
Heini M Natri, Christina B Del Azodi, Lance Peter, Chase J Taylor, Sagrika Chugh, Robert Kendle, Mei-I Chung, David K Flaherty, Brittany K Matlock, Carla L Calvi, Timothy S Blackwell, Lorraine B Ware, Matthew D Bacchetta, Rajat Walia, Ciara M Shaver, Jonathan A Kropski, Davis J McCarthy, Nicholas E Banovich
Cell-type-specific and disease-associated expression quantitative trait loci in the human lung. Nature genetics 56 (4) (2024)
Heini M Natri, Christina B Del Azodi, Lance Peter, Chase J Taylor, Sagrika Chugh, Robert Kendle, Mei-I Chung, David K Flaherty, Brittany K Matlock, Carla L Calvi, Timothy S Blackwell, Lorraine B Ware, Matthew Bacchetta, Rajat Walia, Ciara M Shaver, Jonathan A Kropski, Davis J McCarthy, Nicholas E Banovich
Cell type-specific and disease-associated eQTL in the human lung. bioRxiv : the preprint server for biology (2023)
Stevan Novakovic, Vanessa Tsui, Tim Semple, Luciano Martelotto, Davis J McCarthy, Wayne Crismani
SSNIP-seq: A simple and rapid method for isolation of single-sperm nucleic acid for high-throughput sequencing. PloS one 17 (9) (2022)
Ruqian Lyu, Vanessa Tsui, Wayne Crismani, Ruijie Liu, Heejung Shim, Davis J McCarthy
sgcocaller and comapr: personalised haplotype assembly and comparative crossover map analysis using single-gamete sequencing data. Nucleic acids research 50 (20) (2022)
Helen M L Frazer, Jennifer S N Tang, Michael S Elliott, Katrina M Kunicki, Brendan Hill, Ravishankar Karthik, Chun Fung Kwok, Carlos A Peña-Solórzano, Yuanhong Chen, Chong Wang, Osamah M Al-Qershi, Samantha K Fox, Sherly X Li, Enes Makalic, Tuong Linh Nguyen, Daniel F Schmidt, Prabhathi Basnayake Ralalage, Jocelyn F Lippey, Peter Brotchie, John L Hopper, Gustavo Carneiro, Davis J McCarthy
ADMANI: Annotated Digital Mammograms and Associated Non-Image Datasets. Radiology. Artificial intelligence 5 (2) (2022)
Ruqian Lyu, Vanessa Tsui, Davis J McCarthy, Wayne Crismani
Personalized genome structure via single gamete sequencing. Genome biology 22 (1) (2021)
Musarat Ishaq, Nadeeka Bandara, Steven Morgan, Cameron J Nowell, Ahmad M Mehdi, Ruqian Lyu, Davis J McCarthy, Dovile Anderson, Darren J Creek, Marc G Achen, Ramin Shayan, Tara Karnezis
Key signaling networks are dysregulated in patients with the adipose tissue disorder, lipedema. International journal of obesity (2005) (2021)
Christina B Azodi, Luke Zappia, Alicia Oshlack, Davis J McCarthy
splatPop: simulating population scale single-cell RNA sequencing data. Genome biology 22 (1) (2021)
Davis J McCarthy, Raghd Rostom, Yuanhua Huang, Daniel J Kunz, Petr Danecek, Marc Jan Bonder, Tzachi Hagai, Ruqian Lyu, null null, Wenyi Wang, Daniel J Gaffney, Benjamin David Simons, Oliver Stegle, Sarah A Teichmann
Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes. Nature methods 17 (4) (2020)
Tallulah S Andrews, Vladimir Yu Kiselev, Davis J McCarthy, Martin Hemberg
Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data. Nature protocols 16 (1) (2020)
Anna S E Cuomo, Daniel D Seaton, Davis J McCarthy, Iker Martinez, Marc Jan Bonder, Jose Garcia-Bernardo, Shradha Amatya, Pedro Madrigal, Abigail Isaacson, Florian Buettner, Andrew J Knights, Kedar Nath Natrajan, null null, Ludovic Vallier, John C Marioni, Mariya Chhatriwala, Oliver Stegle
Publisher Correction: Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression. Nature communications 11 (1) (2020)
Anna S E Cuomo, Daniel D Seaton, Davis J McCarthy, Iker Martinez, Marc Jan Bonder, Jose Garcia-Bernardo, Shradha Amatya, Pedro Madrigal, Abigail Isaacson, Florian Buettner, Andrew J Knights, Kedar Nath Natrajan, null null, Ludovic Vallier, John C Marioni, Mariya Chhatriwala, Oliver Stegle
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression. Nature communications 11 (1) (2020)

Davis J McCarthy.css-eqlu8i{font-size:small;padding-left:4px;} (Davis McCarthy)

Publication Activity (10 Years)

Top Topics

Top Venues

Davis J McCarthy (Davis McCarthy)