Oliver Stegle

ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 46

Top Venues

Nature communications

Nature genetics

Nature methods

Nature biotechnology

European Molecular Biology Laboratory

University of Cambridge (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

European Molecular Biology Laboratory Jul 01 2018

Germany

Group leader :: Genome Biology

German Cancer Research Center Jul 01 2018

Germany

Division head :: Computational Genomics and Systems Genetics

European Molecular Biology Laboratory - Dec 31 2018

United Kingdom

Research group leader :: European Bioinformatics Institute

Max-Planck-Campus Tubingen

Germany

Postdoctoral fellow :: MPI for developmental biology & MPI for intelligent systems

Education History

University of Cambridge

United Kingdom

PHD :: Cavendish Laboratory

Publications

Marc Jan Bonder, Stephen J Clark, Felix Krueger, Siyuan Luo, João Agostinho de Sousa, Aida M Hashtroud, Thomas M Stubbs, Anne-Katrien Stark, Steffen Rulands, Oliver Stegle, Juan I Garaycoechea, Ferdinand von Meyenn
scEpiAge: an age predictor highlighting single-cell ageing heterogeneity in mouse blood. Nature communications 15 (1) (2024)
Jasper Panten, Tobias Heinen, Christina Ernst, Nils Eling, Rebecca E Wagner, Maja Satorius, John C Marioni, Oliver Stegle, Duncan T Odom
The dynamic genetic determinants of increased transcriptional divergence in spermatids. Nature communications 15 (1) (2024)
Antonia Hauth, Jasper Panten, Emma Kneuss, Christel Picard, Nicolas Servant, Isabell Rall, Yuvia A Pérez-Rico, Lena Clerquin, Nila Hendrika Servaas, Laura Villacorta, Ferris E Jung, Christy Luong, Howard Y Chang, Judith Barbara Zaugg, Oliver Stegle, Duncan T Odom, Agnese Loda, Edith Heard
Escape from X inactivation is directly modulated by levels of Xist non-coding RNA. bioRxiv : the preprint server for biology (2024)
Antonia Hauth, Jasper Panten, Emma Kneuss, Christel Picard, Nicolas Servant, Isabell Rall, Yuvia A Pérez-Rico, Lena Clerquin, Nila Hendrika Servaas, Laura Villacorta, Ferris E Jung, Christy Luong, Howard Y Chang, Judith Barbara Zaugg, Oliver Stegle, Duncan T Odom, Agnese Loda, Edith Heard
Escape from X inactivation is directly modulated by levels of Xist non-coding RNA. bioRxiv : the preprint server for biology (2024)
Jasper Panten, Tobias Heinen, Christina Ernst, Nils Eling, Rebecca E Wagner, Maja Satorius, John C Marioni, Oliver Stegle, Duncan T Odom
The dynamic genetic determinants of increased transcriptional divergence in spermatids. Nature communications 15 (1) (2024)
Michael Boutros, Michael Baumann, Anna Bigas, Linda Chaabane, Julien Guerin, Jens K Habermann, Aurélien Jobard, Pier Giuseppe Pelicci, Oliver Stegle, Giovanni Tonon, Alfonso Valencia, Eva C Winkler, Patricia Blanc, Ruggero De Maria, René H Medema, Peter Nagy, Josep Tabernero, Eric Solary
UNCAN.eu: Toward a European Federated Cancer Research Data Hub. Cancer discovery 14 (1) (2024)
Jasper Panten, Tobias Heinen, Christina Ernst, Nils Eling, Rebecca E Wagner, Maja Satorius, John C Marioni, Oliver Stegle, Duncan T Odom
The dynamic genetic determinants of increased transcriptional divergence in spermatids. Nature communications 15 (1) (2024)
Antonia Hauth, Jasper Panten, Emma Kneuss, Christel Picard, Nicolas Servant, Isabell Rall, Yuvia A Pérez-Rico, Lena Clerquin, Nila Hendrika Servaas, Laura Villacorta, Ferris E Jung, Christy Luong, Howard Y Chang, Judith Barbara Zaugg, Oliver Stegle, Duncan T Odom, Agnese Loda, Edith Heard
Escape from X inactivation is directly modulated by levels of Xist non-coding RNA. bioRxiv : the preprint server for biology (2024)
Jasper Panten, Tobias Heinen, Christina Ernst, Nils Eling, Rebecca E Wagner, Maja Satorius, John C Marioni, Oliver Stegle, Duncan T Odom
The dynamic genetic determinants of increased transcriptional divergence in spermatids. Nature communications 15 (1) (2024)
Michael Boutros, Michael Baumann, Anna Bigas, Linda Chaabane, Julien Guerin, Jens K Habermann, Aurélien Jobard, Pier Giuseppe Pelicci, Oliver Stegle, Giovanni Tonon, Alfonso Valencia, Eva C Winkler, Patricia Blanc, Ruggero De Maria, René H Medema, Peter Nagy, Josep Tabernero, Eric Solary
UNCAN.eu: Toward a European Federated Cancer Research Data Hub. Cancer discovery 14 (1) (2024)
Luca Marconato, Giovanni Palla, Kevin A Yamauchi, Isaac Virshup, Elyas Heidari, Tim Treis, Wouter-Michiel Vierdag, Marcella Toth, Sonja Stockhaus, Rahul B Shrestha, Benjamin Rombaut, Lotte Pollaris, Laurens Lehner, Harald Vöhringer, Ilia Kats, Yvan Saeys, Sinem K Saka, Wolfgang Huber, Moritz Gerstung, Josh Moore, Fabian Joachim Theis, Oliver Stegle
SpatialData: an open and universal data framework for spatial omics. Nature methods (2024)
Marc Jan Bonder, Stephen J Clark, Felix Krueger, Siyuan Luo, João Agostinho de Sousa, Aida M Hashtroud, Thomas M Stubbs, Anne-Katrien Stark, Steffen Rulands, Oliver Stegle, Juan I Garaycoechea, Ferdinand von Meyenn
scEpiAge: an age predictor highlighting single-cell ageing heterogeneity in mouse blood. Nature communications 15 (1) (2024)
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John A Bogovic, Jordao Bragantini, Jackson M Brown, Jean-Marie Burel, Xavier Casas Moreno, Gustavo de Medeiros, Erin E Diel, David Gault, Satrajit S Ghosh, Ilan Gold, Yaroslav O Halchenko, Matthew Hartley, David Horsfall, Mark S Keller, Mark Kittisopikul, Gabor Kovacs, Aybüke Küpcü Yoldaş, Koji Kyoda, Albane le Tournoulx de la Villegeorges, Tong Li, Prisca Liberali, Dominik Lindner, Melissa Linkert, Joel Lüthi, Jeremy Maitlin-Shepard, Trevor Manz, Luca Marconato, Matthew McCormick, Merlin Lange, Khaled Mohamed, William Moore, Nils Norlin, Wei Ouyang, Buğra Özdemir, Giovanni Palla, Constantin Pape, Lucas Pelkmans, Tobias Pietzsch, Stephan Preibisch, Martin Prete, Norman Rzepka, Sameeul Samee, Nicholas J Schaub, Hythem Sidky, Ahmet Can Solak, David R Stirling, Jonathan Striebel, Christian Tischer, Daniel M Toloudis, Isaac Virshup, Petr Walczysko, Alan M Watson, Erin Weisbart, Frances Wong, Kevin A Yamauchi, Omer Ali Bayraktar, Beth A Cimini, Nils Gehlenborg, Muzlifah A Haniffa, Nathan A Hotaling, Shuichi Onami, Loïc Alain Royer, Stephan Saalfeld, Oliver Stegle, Fabian Joachim Theis, Jason R Swedlow
OME-Zarr: a cloud-optimized bioimaging file format with international community support. Histochemistry and cell biology (2023)
Alexandra M Poos, Nina Prokoph, Moritz Jakob Przybilla, Jan-Philipp Mallm, Simon Steiger, Isabelle Seufert, Lukas John, Stephan M Tirier, Katharina Bauer, Anja Baumann, Jennifer Rohleder, Umair Munawar, Leo Rasche, Klaus Martin Kortüm, Nicola Giesen, Philipp Reichert, Stefanie Huhn, Carsten Muller-Tidow, Hartmut Goldschmidt, Oliver Stegle, Marc S Raab, Karsten Rippe, Niels Weinhold
Resolving therapy resistance mechanisms in multiple myeloma by multi-omics subclone analysis. Blood (2023)
Anna Arutyunyan, Kenny Roberts, Kevin Troulé, Frederick C K Wong, Megan A Sheridan, Ilia Kats, Luz Garcia-Alonso, Britta Velten, Regina Hoo, Elias R Ruiz-Morales, Carmen Sancho-Serra, Jarrod Shilts, Louis-Francois Handfield, Luca Marconato, Elizabeth Tuck, Lucy Gardner, Cecilia Icoresi Mazzeo, Qian Li, Iva Kelava, Gavin J Wright, Elena Prigmore, Sarah A Teichmann, Omer Ali Bayraktar, Ashley Moffett, Oliver Stegle, Margherita Y Turco, Roser Vento-Tormo
Spatial multiomics map of trophoblast development in early pregnancy. Nature (2023)
Britta Velten, Oliver Stegle
Principles and challenges of modeling temporal and spatial omics data. Nature methods (2023)
Anna Arutyunyan, Kenny Roberts, Kevin Troulé, Frederick C K Wong, Megan A Sheridan, Ilia Kats, Luz Garcia-Alonso, Britta Velten, Regina Hoo, Elias R Ruiz-Morales, Carmen Sancho-Serra, Jarrod Shilts, Louis-Francois Handfield, Luca Marconato, Elizabeth Tuck, Lucy Gardner, Cecilia Icoresi Mazzeo, Qian Li, Iva Kelava, Gavin J Wright, Elena Prigmore, Sarah A Teichmann, Omer Ali Bayraktar, Ashley Moffett, Oliver Stegle, Margherita Y Turco, Roser Vento-Tormo
Spatial multiomics map of trophoblast development in early pregnancy. Nature (2023)
Natushiko Kumasaka, Raghd Rostom, Ni Huang, Krzysztof Polański, Kerstin B Meyer, Sharad Patel, Rachel Boyd, Celine Gomez, Sam N Barnett, Nikolaos I Panousis, Jeremy Schwartzentruber, Maya Ghoussaini, Paul A Lyons, Fernando J Calero-Nieto, Berthold Göttgens, Josephine L Barnes, Kaylee B Worlock, Masahiro Yoshida, Marko Z Nikolić, Emily Stephenson, Gary Reynolds, Muzlifah A Haniffa, John C Marioni, Oliver Stegle, Tzachi Hagai, Sarah A Teichmann
Mapping interindividual dynamics of innate immune response at single-cell resolution. Nature genetics 55 (6) (2023)
Kousik Kundu, Manuel Tardaguila, Alice L Mann, Stephen Watt, Hannes Ponstingl, Louella Vasquez, Dominique Von Schiller, Nicholas W Morrell, Oliver Stegle, Tomi Pastinen, Stephen J Sawcer, Carl A Anderson, Klaudia Walter, Nicole Soranzo
Genetic associations at regulatory phenotypes improve fine-mapping of causal variants for 12 immune-mediated diseases. Nature genetics 54 (3) (2022)
Javier Rodríguez-Ubreva, Anna Arutyunyan, Marc Jan Bonder, Lucía Del Pino-Molina, Stephen J Clark, Carlos de la Calle-Fabregat, Luz Garcia-Alonso, Louis-François Handfield, Laura Ciudad, Eduardo Andrés León, Felix Krueger, Francesc Català-Moll, Virginia C Rodríguez-Cortez, Krzysztof Polanski, Lira Mamanova, Stijn van Dongen, Vladimir Yu Kiselev, María Teresa Martínez de Saavedra Álvarez, Holger Heyn, Javier Martín, Klaus Warnatz, Eduardo López-Granados, Carlos Flores, Oliver Stegle, Gavin Kelsey, Roser Vento-Tormo, Esteban Ballestar
Single-cell Atlas of common variable immunodeficiency shows germinal center-associated epigenetic dysregulation in B-cell responses. Nature communications 13 (1) (2022)
Britta Velten, Jana M Braunger, Ricard Argelaguet, Damien Arnol, Jakob Wirbel, Danila Bredikhin, Georg Zeller, Oliver Stegle
Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO. Nature methods 19 (2) (2022)
Tobias Heinen, Stefano Secchia, James P Reddington, Bingqing Zhao, Eileen E M Furlong, Oliver Stegle
scDALI: modeling allelic heterogeneity in single cells reveals context-specific genetic regulation. Genome biology 23 (1) (2022)
Vitalii Kleshchevnikov, Artem Shmatko, Emma Dann, Alexander Aivazidis, Hamish W King, Tong Li, Rasa Elmentaite, Artem Lomakin, Veronika Kedlian, Adam Gayoso, Mika Sarkin Jain, Jun Sung Park, Lauma Ramona, Elizabeth Tuck, Anna Arutyunyan, Roser Vento-Tormo, Moritz Gerstung, Louisa Katherine James, Oliver Stegle, Omer Ali Bayraktar
Cell2location maps fine-grained cell types in spatial transcriptomics. Nature biotechnology 40 (5) (2022)
Anna S E Cuomo, Tobias Heinen, Danai Vagiaki, Danilo Horta, John C Marioni, Oliver Stegle
CellRegMap: a statistical framework for mapping context-specific regulatory variants using scRNA-seq. Molecular systems biology 18 (8) (2022)
Peter Ebert, Peter A Audano, Qihui Zhu, Bernardo Rodriguez-Martin, David Porubsky, Marc Jan Bonder, Arvis Sulovari, Jana Ebler, Weichen Zhou, Rebecca Serra Mari, Feyza Yilmaz, Xuefang Zhao, PingHsun Hsieh, Joyce Lee, Sushant Kumar, Jiadong Lin, Tobias Rausch, Yu Chen, Jingwen Ren, Martin Santamarina, Wolfram Höps, Hufsah Ashraf, Nelson T Chuang, Xiaofei Yang, Katherine M Munson, Alexandra P Lewis, Susan Fairley, Luke J Tallon, Wayne E Clarke, Anna O Basile, Marta Byrska-Bishop, André Corvelo, Uday S Evani, Tsung-Yu Lu, Mark J P Chaisson, Junjie Chen, Chong Li, Harrison Brand, Aaron M Wenger, Maryam Ghareghani, William T Harvey, Benjamin Raeder, Patrick Hasenfeld, Allison A Regier, Haley J Abel, Ira M Hall, Paul Flicek, Oliver Stegle, Mark B Gerstein, Jose M C Tubio, Zepeng Mu, Yang I Li, Xinghua Shi, Alex R Hastie, Kai Ye, Zechen Chong, Ashley D Sanders, Michael C Zody, Michael E Talkowski, Ryan E Mills, Scott E Devine, Charles Lee, Jan O Korbel, Tobias Marschall, Evan E Eichler
Haplotype-resolved diverse human genomes and integrated analysis of structural variation. Science (New York, N.Y.) 372 (6537) (2021)
Ricard Argelaguet, Anna S E Cuomo, Oliver Stegle, John C Marioni
Computational principles and challenges in single-cell data integration. Nature biotechnology 39 (10) (2021)
Mathias Kalxdorf, Torsten Müller, Oliver Stegle, Jeroen Krijgsveld
IceR improves proteome coverage and data completeness in global and single-cell proteomics. Nature communications 12 (1) (2021)
Urmo Võsa, Annique A J Claringbould, Harm-Jan Westra, Marc Jan Bonder, Patrick Deelen, Biao Zeng, Holger Kirsten, Ashis Saha, Roman Kreuzhuber, Seyhan Yazar, Harm Brugge, Roy Oelen, Dylan H de Vries, Monique G P van der Wijst, Silva Kasela, Natalia Pervjakova, Isabel Alves, Marie-Julie Favé, Mawussé Agbessi, Mark W Christiansen, Rick Jansen, Ilkka Seppälä, Lin Tong, Alexander Teumer, Katharina Schramm, Gibran Hemani, Joost A M Verlouw, Hanieh Yaghootkar, Reyhan Sönmez Flitman, Andrew Anand Brown, Viktorija Kukushkina, Anette Kalnapenkis, Sina Rueger, Eleonora Porcu, Jaanika Kronberg, Johannes Kettunen, Bernett Lee, Futao Zhang, Ting Qi, Jose Alquicira Hernandez, Wibowo Arindrarto, Frank Beutner, null null, null null, Julia Dmitrieva, Mahmoud Elansary, Benjamin P Fairfax, Michel Georges, Bastiaan T Heijmans, Alex W Hewitt, Mika Kähönen, Yungil Kim, Julian C Knight, Peter Kovacs, Knut Krohn, Shuang Li, Markus Loeffler, Urko M Marigorta, Hailang Mei, Yukihide Momozawa, Martina Müller-Nuraysid, Matthias Nauck, Michel G Nivard, Brenda W J H Penninx, Jonathan K Pritchard, Olli T Raitakari, Olaf Rotzschke, Pieternella Eline Slagboom, Coen D A Stehouwer, Michael Stumvoll, Patrick Sullivan, Peter A C 't Hoen, Joachim Thiery, Anke Tönjes, Jenny Van Dongen, Maarten van Iterson, Jan Herman Veldink, Linus Völker, C A Robert Warmerdam, Cisca Wijmenga, Morris A Swertz, Anand Kumar Andiappan, Grant W Montgomery, Samuli Ripatti, Markus Perola, Zoltan Kutalik, Emmanouil T Dermitzakis, Sven Bergmann, Timothy M Frayling, Joyce van Meurs, Holger Prokisch, Habibul Ahsan, Brandon L Pierce, Terho Lehtimäki, Dorret I Boomsma, Bruce M Psaty, Sina A Gharib, Philip Awadalla, Lili A Milani, Willem Hendrik Ouwehand, Kate Downes, Oliver Stegle, Alexis Battle, Peter M Visscher, Jian Yang, Markus Scholz, Joseph Powell, Greg Gibson, Tõnu Esko, Lude H Franke
Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression. Nature genetics 53 (9) (2021)
Julie Jerber, Daniel D Seaton, Anna S E Cuomo, Natushiko Kumasaka, James Haldane, Juliette Steer, Minal Patel, Daniel Pearce, Malin H L Andersson, Marc Jan Bonder, Ed Mountjoy, Maya Ghoussaini, Madeline A Lancaster, null null, John C Marioni, Florian T Merkle, Daniel J Gaffney, Oliver Stegle
Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation. Nature genetics 53 (3) (2021)
Marc Jan Bonder, Craig Smail, Michael J Gloudemans, Laure Frésard, David Jakubosky, Matteo D'Antonio, Xin Li, Nicole M Ferraro, Ivan Carcamo-Orive, Bogdan Mirauta, Daniel D Seaton, Na Cai, Dara Vakili, Danilo Horta, Chunli Zhao, Diane B Zastrow, Devon E Bonner, null null, null null, null null, null null, Matthew T Wheeler, Helena Kilpinen, Joshua W Knowles, Erin N Smith, Kelly A Frazer, Stephen B Montgomery, Oliver Stegle
Identification of rare and common regulatory variants in pluripotent cells using population-scale transcriptomics. Nature genetics 53 (3) (2021)
Na Cai, Aurora Gomez-Duran, Ekaterina Yonova-Doing, Kousik Kundu, Annette I Burgess, Zoe J Golder, Claudia Calabrese, Marc J Bonder, Marta Camacho, Rachael A Lawson, Lixin Li, Caroline H Williams-Gray, null null, Emanuele Di Angelantonio, David J Roberts, Nick A Watkins, Willem H Ouwehand, Adam S Butterworth, Isobel D Stewart, Maik Pietzner, Nicholas J Wareham, Claudia Langenberg, John Danesh, Klaudia Walter, Peter M Rothwell, Joanna M M Howson, Oliver Stegle, Patrick F Chinnery, Nicole Soranzo
Mitochondrial DNA variants modulate N-formylmethionine, proteostasis and risk of late-onset human diseases. Nature medicine 27 (9) (2021)
Davis J McCarthy, Raghd Rostom, Yuanhua Huang, Daniel J Kunz, Petr Danecek, Marc Jan Bonder, Tzachi Hagai, Ruqian Lyu, null null, Wenyi Wang, Daniel J Gaffney, Benjamin David Simons, Oliver Stegle, Sarah A Teichmann
Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes. Nature methods 17 (4) (2020)
Bogdan Andrei Mirauta, Daniel D Seaton, Dalila Bensaddek, Alejandro Brenes, Marc Jan Bonder, Helena Kilpinen, null null, Oliver Stegle, Angus I Lamond
Population-scale proteome variation in human induced pluripotent stem cells. eLife 9 (2020)
Stephen J Clark, Ricard Argelaguet, Chantriolnt-Andreas Kapourani, Thomas M Stubbs, Heather J Lee, Celia Alda-Catalinas, Felix Krueger, Guido Sanguinetti, Gavin Kelsey, John C Marioni, Oliver Stegle, Wolf Reik
scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells. Nature communications 9 (1) (2018)
Rachel Moore, Francesco Paolo Casale, Marc Jan Bonder, Danilo Horta, null null, Lude H Franke, Inês A Barroso, Oliver Stegle
A linear mixed-model approach to study multivariate gene-environment interactions. Nature genetics 51 (1) (2018)
Gavin Kelsey, Oliver Stegle, Juan I Garaycoechea
Single-cell epigenomics: Recording the past and predicting the future. Science (New York, N.Y.) 358 (6359) (2018)
Valentine Svensson, Sarah A Teichmann, Oliver Stegle
SpatialDE: identification of spatially variable genes. Nature methods 15 (5) (2018)
Michael P Menden, Francesco Paolo Casale, Johannes Stephan, Graham R Bignell, Francesco Iorio, Ultan McDermott, Mathew J Garnett, Julio Saez-Rodriguez, Oliver Stegle
The germline genetic component of drug sensitivity in cancer cell lines. Nature communications 9 (1) (2018)
Ricard Argelaguet, Britta Velten, Damien Arnol, Sascha Dietrich, Thorsten Zenz, John C Marioni, Florian Buettner, Wolfgang Huber, Oliver Stegle
Multi-Omics Factor Analysis-a framework for unsupervised integration of multi-omics data sets. Molecular systems biology 14 (6) (2018)
Martha Imprialou, André Kahles, Joshua G Steffen, Edward J Osborne, Xiangchao Gan, Janne Lempe, Amarjit Bhomra, Eric Belfield, Anne Visscher, Robert Greenhalgh, Nicholas P Harberd, Richard Goram, Jotun Hein, Alexandre Robert-Seilaniantz, Jonathan D G Jones, Oliver Stegle, Paula Kover, Miltos Tsiantis, Magnus Nordborg, Gunnar Rätsch, Richard M Clark, Richard F Mott
Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits. Genetics 205 (4) (2017)
Herbert Schulz, Ann-Kathrin Ruppert, Stefan Herms, Christiane Wolf, Nazanin Mirza-Schreiber, Oliver Stegle, Darina Czamara, Andreas J Forstner, Sugirthan Sivalingam, Susanne Schoch, Susanne Moebus, Benno Pütz, Axel Hillmer, Nadine Fricker, Hartmut Vatter, Bertram Müller-Myhsok, Markus M Nöthen, Albert J Becker, Per Hoffmann, Thomas Sander, Sven Cichon
Genome-wide mapping of genetic determinants influencing DNA methylation and gene expression in human hippocampus. Nature communications 8 (1) (2017)
Romina Petersen, John J Lambourne, Biola M Javierre, Luigi Grassi, Roman Kreuzhuber, Dace Ruklisa, Isabel M Rosa, Ana R Tomé, Heather Elding, Johanna P van Geffen, Tao Jiang, Samantha Farrow, Jonathan Cairns, Abeer M Al-Subaie, Sofie Ashford, Antony Attwood, Joana Batista, Heleen Bouman, Frances Burden, Fizzah A Choudry, Laura Clarke, Paul Flicek, Stephen F Garner, Matthias Haimel, Carly Kempster, Vasileios Ladopoulos, An-Sofie Lenaerts, Paulina M Materek, Harriet McKinney, Stuart Meacham, Daniel Mead, Magdolna Nagy, Christopher J Penkett, Augusto Rendon, Denis Seyres, Benjamin Sun, Salih Tuna, Marie-Elise van der Weide, Steven W Wingett, Joost H Martens, Oliver Stegle, Sylvia Richardson, Ludovic Vallier, David J Roberts, Kathleen Freson, Lorenz Wernisch, Hendrik G Stunnenberg, John Danesh, Peter Fraser, Nicole Soranzo, Adam S Butterworth, Johan W Heemskerk, Ernest Turro, Mikhail Spivakov, Willem H Ouwehand, William J Astle, Kate Downes, Myrto Kostadima, Mattia Frontini
Platelet function is modified by common sequence variation in megakaryocyte super enhancers. Nature communications 8 (2017)
Ignacio E Schor, Jacob F Degner, Dermot Harnett, Enrico Cannavò, Francesco P Casale, Heejung Shim, David A Garfield, Ewan Birney, Matthew Stephens, Oliver Stegle, Eileen E M Furlong
Promoter shape varies across populations and affects promoter evolution and expression noise. Nature genetics 49 (4) (2017)
Florian Buettner, Naruemon Pratanwanich, Davis J McCarthy, John C Marioni, Oliver Stegle
f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq. Genome biology 18 (1) (2017)
Christof Angermueller, Tanel Pärnamaa, Leopold Parts, Oliver Stegle
Deep learning for computational biology. Molecular systems biology 12 (7) (2016)
Florian Buettner, Kedar N Natarajan, F Paolo Casale, Valentina Proserpio, Antonio Scialdone, Fabian Joachim Theis, Sarah A Teichmann, John C Marioni, Oliver Stegle
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells. Nature biotechnology 33 (2) (2015)

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Publication Activity (10 Years)

Top Topics

Top Venues

Oliver Stegle