Derek Reiman

Publication Activity (10 Years)

Years Active: 2019-2023
Publications (10 Years): 5

Top Topics

Microbial Community

Positron Emission Tomography

Top Venues

PLoS computational biology

Nature biotechnology

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Leah L Weber, Derek Reiman, Mrinmoy S Roddur, Yuanyuan Qi, Mohammed El-Kebir, Aly A Khan
TRIBAL: Tree Inference of B cell Clonal Lineages. bioRxiv : the preprint server for biology (2023)
Francisca Rojas Ringeling, Shounak Chakraborty, Caroline Vissers, Derek Reiman, Akshay M Patel, Ki-Heon Lee, Ari Hong, Chan-Woo Park, Tim Reska, Julien Gagneur, Hyeshik Chang, Maria L Spletter, Ki-Jun Yoon, Guo-Li Ming, Hongjun Song, Stefan Canzar
Partitioning RNAs by length improves transcriptome reconstruction from short-read RNA-seq data. Nature biotechnology 40 (5) (2022)
Derek Reiman, Brian T Layden, Yang Dai
MiMeNet: Exploring microbiome-metabolome relationships using neural networks. PLoS computational biology 17 (5) (2021)
Derek Reiman, Godhev Kumar Manakkat Vijay, Heping Xu, Andrew Sonin, Dianyu Chen, Nathan Salomonis, Harinder Singh, Aly A Khan
Pseudocell Tracer-A method for inferring dynamic trajectories using scRNAseq and its application to B cells undergoing immunoglobulin class switch recombination. PLoS computational biology 17 (5) (2021)
Ahmed A Metwally, Philip S Yu, Derek Reiman, Yang Dai, Patricia W Finn, David L Perkins
Utilizing longitudinal microbiome taxonomic profiles to predict food allergy via Long Short-Term Memory networks. PLoS computational biology 15 (2) (2019)