Nathan Salomonis

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 55

Top Topics

Immune Response

Hematopoietic Stem Cell

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Nature immunology

Science translational medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Godhev Kumar Manakkat Vijay, Ming Zhou, Kairavee Thakkar, Abigail Rothrauff, Amanpreet Singh Chawla, Dianyu Chen, Louis Chi-Wai Lau, Peter Habib Gerges, Kashish Chetal, Prabal Chhibbar, Jingyu Fan, Jishnu Das, Alok V Joglekar, Lisa Borghesi, Nathan Salomonis, Heping Xu, Harinder Singh
Temporal dynamics and genomic programming of plasma cell fates. Nature immunology 25 (6) (2024)
Guangyuan Li, Shweta Mahajan, Siyuan Ma, Erin D Jeffery, Xuan Zhang, Anukana Bhattacharjee, Meenakshi Venkatasubramanian, Matthew T Weirauch, Emily R Miraldi, H Leighton Grimes, Gloria M Sheynkman, Tamara Tilburgs, Nathan Salomonis
Splicing neoantigen discovery with SNAF reveals shared targets for cancer immunotherapy. Science translational medicine 16 (730) (2024)
Meenakshi Venkatasubramanian, Leya Schwartz, Nandini Ramachandra, Joshua Bennett, Krithika R Subramanian, Xiaoting Chen, Shanisha Gordon-Mitchell, Ariel Fromowitz, Kith Pradhan, David Shechter, Srabani Sahu, Diane Heiser, Peggy Scherle, Kashish Chetal, Aishwarya Kulkarni, Kasiani C Myers, Matthew T Weirauch, H Leighton Grimes, Daniel T Starczynowski, Amit K Verma, Nathan Salomonis
Broad de-regulated U2AF1 splicing is prognostic and augments leukemic transformation via protein arginine methyltransferase activation. bioRxiv : the preprint server for biology (2024)
Xuan Zhang, Baobao Song, Maximillian J Carlino, Guangyuan Li, Kyle Ferchen, Mi Chen, Evrett N Thompson, Bailee N Kain, Dan Schnell, Kairavee Thakkar, Michal Kouril, Kang Jin, Stuart B Hay, Sidharth Sen, David Bernardicius, Siyuan Ma, Sierra N Bennett, Joshua Croteau, Ornella Salvatori, Melvin H Lye, Austin E Gillen, Craig T Jordan, Harinder Singh, Diane S Krause, Nathan Salomonis, H Leighton Grimes
An immunophenotype-coupled transcriptomic atlas of human hematopoietic progenitors. Nature immunology (2024)
Luke Lambourne, Kaia Mattioli, Clarissa Santoso, Gloria Sheynkman, Sachi Inukai, Babita Kaundal, Anna Berenson, Kerstin Spirohn-Fitzgerald, Anukana Bhattacharjee, Elisabeth Rothman, Shaleen Shrestha, Florent Laval, Zhipeng Yang, Deepa Bisht, Jared A Sewell, Guangyuan Li, Anisa Prasad, Sabrina Phanor, Ryan Lane, Devlin M Campbell, Toby Hunt, Dawit Balcha, Marinella Gebbia, Jean-Claude Twizere, Tong Hao, Adam Frankish, Josh A Riback, Nathan Salomonis, Michael A Calderwood, David E Hill, Nidhi Sahni, Marc Vidal, Martha L Bulyk, Juan Ignacio Fuxman Bass
Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms. bioRxiv : the preprint server for biology (2024)
Luke Lambourne, Kaia Mattioli, Clarissa Santoso, Gloria Sheynkman, Sachi Inukai, Babita Kaundal, Anna Berenson, Kerstin Spirohn-Fitzgerald, Anukana Bhattacharjee, Elisabeth Rothman, Shaleen Shrestha, Florent Laval, Zhipeng Yang, Deepa Bisht, Jared A Sewell, Guangyuan Li, Anisa Prasad, Sabrina Phanor, Ryan Lane, Devlin M Campbell, Toby Hunt, Dawit Balcha, Marinella Gebbia, Jean-Claude Twizere, Tong Hao, Adam Frankish, Josh A Riback, Nathan Salomonis, Michael A Calderwood, David E Hill, Nidhi Sahni, Marc Vidal, Martha L Bulyk, Juan Ignacio Fuxman Bass
Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms. bioRxiv : the preprint server for biology (2024)
Guangyuan Li, Shweta Mahajan, Siyuan Ma, Erin D Jeffery, Xuan Zhang, Anukana Bhattacharjee, Meenakshi Venkatasubramanian, Matthew T Weirauch, Emily R Miraldi, H Leighton Grimes, Gloria M Sheynkman, Tamara Tilburgs, Nathan Salomonis
Splicing neoantigen discovery with SNAF reveals shared targets for cancer immunotherapy. Science translational medicine 16 (730) (2024)
Meenakshi Venkatasubramanian, Leya Schwartz, Nandini Ramachandra, Joshua Bennett, Krithika R Subramanian, Xiaoting Chen, Shanisha Gordon-Mitchell, Ariel Fromowitz, Kith Pradhan, David Shechter, Srabani Sahu, Diane Heiser, Peggy Scherle, Kashish Chetal, Aishwarya Kulkarni, Kasiani C Myers, Matthew T Weirauch, H Leighton Grimes, Daniel T Starczynowski, Amit K Verma, Nathan Salomonis
Broad de-regulated U2AF1 splicing is prognostic and augments leukemic transformation via protein arginine methyltransferase activation. bioRxiv : the preprint server for biology (2024)
Luke Lambourne, Kaia Mattioli, Clarissa Santoso, Gloria Sheynkman, Sachi Inukai, Babita Kaundal, Anna Berenson, Kerstin Spirohn-Fitzgerald, Anukana Bhattacharjee, Elisabeth Rothman, Shaleen Shrestha, Florent Laval, Zhipeng Yang, Deepa Bisht, Jared A Sewell, Guangyuan Li, Anisa Prasad, Sabrina Phanor, Ryan Lane, Devlin M Campbell, Toby Hunt, Dawit Balcha, Marinella Gebbia, Jean-Claude Twizere, Tong Hao, Adam Frankish, Josh A Riback, Nathan Salomonis, Michael A Calderwood, David E Hill, Nidhi Sahni, Marc Vidal, Martha L Bulyk, Juan Ignacio Fuxman Bass
Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms. bioRxiv : the preprint server for biology (2024)
Godhev Kumar Manakkat Vijay, Ming Zhou, Kairavee Thakkar, Abigail Rothrauff, Amanpreet Singh Chawla, Dianyu Chen, Louis Chi-Wai Lau, Peter Habib Gerges, Kashish Chetal, Prabal Chhibbar, Jingyu Fan, Jishnu Das, Alok V Joglekar, Lisa Borghesi, Nathan Salomonis, Heping Xu, Harinder Singh
Temporal dynamics and genomic programming of plasma cell fates. Nature immunology 25 (6) (2024)
Godhev Kumar Manakkat Vijay, Ming Zhou, Kairavee Thakkar, Abigail Rothrauff, Amanpreet Singh Chawla, Dianyu Chen, Louis Chi-Wai Lau, Peter Habib Gerges, Kashish Chetal, Prabal Chhibbar, Jingyu Fan, Jishnu Das, Alok V Joglekar, Lisa Borghesi, Nathan Salomonis, Heping Xu, Harinder Singh
Temporal dynamics and genomic programming of plasma cell fates. Nature immunology (2024)
Godhev Kumar Manakkat Vijay, Ming Zhou, Kairavee Thakkar, Abigail Rothrauff, Amanpreet Singh Chawla, Dianyu Chen, Louis Chi-Wai Lau, Peter Habib Gerges, Kashish Chetal, Prabal Chhibbar, Jingyu Fan, Jishnu Das, Alok V Joglekar, Lisa Borghesi, Nathan Salomonis, Heping Xu, Harinder Singh
Temporal dynamics and genomic programming of plasma cell fates. Nature immunology (2024)
Xuan Zhang, Baobao Song, Maximillian J Carlino, Guangyuan Li, Kyle Ferchen, Mi Chen, Evrett N Thompson, Bailee N Kain, Dan Schnell, Kairavee Thakkar, Michal Kouril, Kang Jin, Stuart B Hay, Sidharth Sen, David Bernardicius, Siyuan Ma, Sierra N Bennett, Joshua Croteau, Ornella Salvatori, Melvin H Lye, Austin E Gillen, Craig T Jordan, Harinder Singh, Diane S Krause, Nathan Salomonis, H Leighton Grimes
An immunophenotype-coupled transcriptomic atlas of human hematopoietic progenitors. Nature immunology 25 (4) (2024)
Xuan Zhang, Baobao Song, Maximillian J Carlino, Guangyuan Li, Kyle Ferchen, Mi Chen, Evrett N Thompson, Bailee N Kain, Dan Schnell, Kairavee Thakkar, Michal Kouril, Kang Jin, Stuart B Hay, Sidharth Sen, David Bernardicius, Siyuan Ma, Sierra N Bennett, Joshua Croteau, Ornella Salvatori, Melvin H Lye, Austin E Gillen, Craig T Jordan, Harinder Singh, Diane S Krause, Nathan Salomonis, H Leighton Grimes
An immunophenotype-coupled transcriptomic atlas of human hematopoietic progenitors. Nature immunology 25 (4) (2024)
Luke Lambourne, Kaia Mattioli, Clarissa Santoso, Gloria Sheynkman, Sachi Inukai, Babita Kaundal, Anna Berenson, Kerstin Spirohn-Fitzgerald, Anukana Bhattacharjee, Elisabeth Rothman, Shaleen Shrestha, Florent Laval, Zhipeng Yang, Deepa Bisht, Jared A Sewell, Guangyuan Li, Anisa Prasad, Sabrina Phanor, Ryan Lane, Devlin M Campbell, Toby Hunt, Dawit Balcha, Marinella Gebbia, Jean-Claude Twizere, Tong Hao, Adam Frankish, Josh A Riback, Nathan Salomonis, Michael A Calderwood, David E Hill, Nidhi Sahni, Marc Vidal, Martha L Bulyk, Juan Ignacio Fuxman Bass
Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms. bioRxiv : the preprint server for biology (2024)
Meenakshi Venkatasubramanian, Leya Schwartz, Nandini Ramachandra, Joshua Bennett, Krithika R Subramanian, Xiaoting Chen, Shanisha Gordon-Mitchell, Ariel Fromowitz, Kith Pradhan, David Shechter, Srabani Sahu, Diane Heiser, Peggy Scherle, Kashish Chetal, Aishwarya Kulkarni, Kasiani C Myers, Matthew T Weirauch, H Leighton Grimes, Daniel T Starczynowski, Amit K Verma, Nathan Salomonis
Broad de-regulated U2AF1 splicing is prognostic and augments leukemic transformation via protein arginine methyltransferase activation. bioRxiv : the preprint server for biology (2024)
Luke Lambourne, Kaia Mattioli, Clarissa Santoso, Gloria Sheynkman, Sachi Inukai, Babita Kaundal, Anna Berenson, Kerstin Spirohn-Fitzgerald, Anukana Bhattacharjee, Elisabeth Rothman, Shaleen Shrestha, Florent Laval, Zhipeng Yang, Deepa Bisht, Jared A Sewell, Guangyuan Li, Anisa Prasad, Sabrina Phanor, Ryan Lane, Devlin M Campbell, Toby Hunt, Dawit Balcha, Marinella Gebbia, Jean-Claude Twizere, Tong Hao, Adam Frankish, Josh A Riback, Nathan Salomonis, Michael A Calderwood, David E Hill, Nidhi Sahni, Marc Vidal, Martha L Bulyk, Juan Ignacio Fuxman Bass
Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms. bioRxiv : the preprint server for biology (2024)
Xuan Zhang, Baobao Song, Maximillian J Carlino, Guangyuan Li, Kyle Ferchen, Mi Chen, Evrett N Thompson, Bailee N Kain, Dan Schnell, Kairavee Thakkar, Michal Kouril, Kang Jin, Stuart B Hay, Sidharth Sen, David Bernardicius, Siyuan Ma, Sierra N Bennett, Joshua Croteau, Ornella Salvatori, Melvin H Lye, Austin E Gillen, Craig T Jordan, Harinder Singh, Diane S Krause, Nathan Salomonis, H Leighton Grimes
An immunophenotype-coupled transcriptomic atlas of human hematopoietic progenitors. Nature immunology 25 (4) (2024)
Xuan Zhang, Baobao Song, Maximillian J Carlino, Guangyuan Li, Kyle Ferchen, Mi Chen, Evrett N Thompson, Bailee N Kain, Dan Schnell, Kairavee Thakkar, Michal Kouril, Kang Jin, Stuart B Hay, Sidharth Sen, David Bernardicius, Siyuan Ma, Sierra N Bennett, Joshua Croteau, Ornella Salvatori, Melvin H Lye, Austin E Gillen, Craig T Jordan, Harinder Singh, Diane S Krause, Nathan Salomonis, H Leighton Grimes
An immunophenotype-coupled transcriptomic atlas of human hematopoietic progenitors. Nature immunology 25 (4) (2024)
Meenakshi Venkatasubramanian, Leya Schwartz, Nandini Ramachandra, Joshua Bennett, Krithika R Subramanian, Xiaoting Chen, Shanisha Gordon-Mitchell, Ariel Fromowitz, Kith Pradhan, David Shechter, Srabani Sahu, Diane Heiser, Peggy Scherle, Kashish Chetal, Aishwarya Kulkarni, Kasiani C Myers, Matthew T Weirauch, H Leighton Grimes, Daniel T Starczynowski, Amit K Verma, Nathan Salomonis
Broad de-regulated U2AF1 splicing is prognostic and augments leukemic transformation via protein arginine methyltransferase activation. bioRxiv : the preprint server for biology (2024)
Guangyuan Li, Baobao Song, Harinder Singh, V B Surya Prasath, H Leighton Grimes, Nathan Salomonis
Decision level integration of unimodal and multimodal single cell data with scTriangulate. Nature communications 14 (1) (2023)
Jayati Basu, Andre Olsson, Kyle Ferchen, Elizaveta K Titerina, Kashish Chetal, Emmanuelle Nicolas, Philip Czyzewicz, Dmitry Levchenko, Lu Ge, Xiang Hua, H Leighton Grimes, Nathan Salomonis, Dietmar J Kappes
ThPOK is a critical multifaceted regulator of myeloid lineage development. Nature immunology (2023)
Sarai T Dean, Chiharu Ishikawa, Xiaoqin Zhu, Sean Walulik, Timothy Nixon, Jessica K Jordan, Samantha Henderson, Michael Wyder, Nathan Salomonis, Mark Wunderlich, Kenneth D Greis, Daniel T Starczynowski, Andrew G Volk
Repression of TRIM13 by chromatin assembly factor CHAF1B is critical for AML development. Blood advances (2023)
Guangyuan Li, Anukana Bhattacharjee, Nathan Salomonis
Quantifying tumor specificity using Bayesian probabilistic modeling for drug target discovery and prioritization. bioRxiv : the preprint server for biology (2023)
Minzhe Guo, Michael P Morley, Cheng Jiang, Yixin Wu, Guangyuan Li, Yina Du, Shuyang Zhao, Andrew Wagner, Adnan Cihan Cakar, Michal Kouril, Kang Jin, Nathan Gaddis, Joseph A Kitzmiller, Kathleen Stewart, Maria C Basil, Susan M Lin, Yun Ying, Apoorva Babu, Kathryn A Wikenheiser-Brokamp, Kyu Shik Mun, Anjaparavanda P Naren, Geremy C Clair, Joshua N Adkins, Gloria S Pryhuber, Ravi S Misra, Bruce J Aronow, Timothy L Tickle, Nathan Salomonis, Xin Sun, Edward E Morrisey, Jeffrey A Whitsett, null null, Yan Xu
Guided construction of single cell reference for human and mouse lung. Nature communications 14 (1) (2023)
Guangyuan Li, Baobao Song, Harinder Singh, V B Surya Prasath, H Leighton Grimes, Nathan Salomonis
Decision level integration of unimodal and multimodal single cell data with scTriangulate. Nature communications 14 (1) (2023)
Michael Lape, Daniel Schnell, Sreeja Parameswaran, Kevin Ernst, Nathan Salomonis, Lisa J Martin, Brett M Harnett, Leah C Kottyan, Matthew T Weirauch
After the Infection: A Survey of Pathogens and Non-communicable Human Disease. medRxiv : the preprint server for health sciences (2023)
Sarai T Dean, Chiharu Ishikawa, Xiaoqin Zhu, Sean Walulik, Timothy Nixon, Jessica K Jordan, Samantha Henderson, Michael Wyder, Nathan Salomonis, Mark Wunderlich, Kenneth D Greis, Daniel T Starczynowski, Andrew G Volk
Repression of TRIM13 by chromatin assembly factor CHAF1B is critical for AML development. Blood advances (2023)
Guangyuan Li, Baobao Song, Harinder Singh, V B Surya Prasath, H Leighton Grimes, Nathan Salomonis
Decision level integration of unimodal and multimodal single cell data with scTriangulate. Nature communications 14 (1) (2023)
Guangyuan Li, Baobao Song, Harinder Singh, V B Surya Prasath, H Leighton Grimes, Nathan Salomonis
Decision level integration of unimodal and multimodal single cell data with scTriangulate. Nature communications 14 (1) (2023)
Kyle Ferchen, Nathan Salomonis, H Leighton Grimes
pyInfinityFlow: optimized imputation and analysis of high-dimensional flow cytometry data for millions of cells. Bioinformatics (Oxford, England) 39 (5) (2023)
Kyle Ferchen, Nathan Salomonis, H Leighton Grimes
pyInfinityFlow: optimized imputation and analysis of high-dimensional flow cytometry data for millions of cells. Bioinformatics (Oxford, England) 39 (5) (2023)
Michael Solomon, Baobao Song, Vinothini Govindarajah, Samantha Good, Ashok Arasu, E Broderick Hinton, Kairavee Thakkar, James Bartram, Marie-Dominique Filippi, Jose A Cancelas, Nathan Salomonis, H Leighton Grimes, Damien Reynaud
Slow cycling and durable Flt3+ progenitors contribute to hematopoiesis under native conditions. The Journal of experimental medicine 221 (1) (2023)
Jacob T Gafranek, Enrico D'Aniello, Padmapriyadarshini Ravisankar, Kairavee Thakkar, Ronald J Vagnozzi, Hee-Woong Lim, Nathan Salomonis, Joshua S Waxman
Sinus venosus adaptation models prolonged cardiovascular disease and reveals insights into evolutionary transitions of the vertebrate heart. Nature communications 14 (1) (2023)
Guangyuan Li, Baobao Song, Harinder Singh, V B Surya Prasath, H Leighton Grimes, Nathan Salomonis
Decision level integration of unimodal and multimodal single cell data with scTriangulate. Nature communications 14 (1) (2023)
María Piedad Menéndez-Gutiérrez, Jesús Porcuna, Ramesh C Nayak, Ana Paredes, Haixia Niu, Vanessa Núñez, Aditi Paranjpe, Manuel J Jose Gómez, Anukana Bhattacharjee, Daniel J Schnell, Fatima Sánchez-Cabo, John S S Welch, Nathan Salomonis, Jose A Cancelas, Mercedes Ricote
Retinoid X receptor promotes hematopoietic stem cell fitness and quiescence and preserves hematopoietic homeostasis. Blood (2022)
Joseph Stevens, Shelby Steinmeyer, Madeline Bonfield, Laura S Peterson, Timothy Wang, Jerilyn Gray, Ian P Lewkowich, Yan Xu, Yina Du, Minzhe Guo, James Lawrence Wynn, William J Zacharias, Nathan Salomonis, Lisa A Miller, Claire A Chougnet, Dennis Hartigan O'Connor, Hitesh Deshmukh
The balance between protective and pathogenic immune responses to pneumonia in the neonatal lung is enforced by gut microbiota. Science translational medicine 14 (649) (2022)
Nathan Gaddis, Joshua Fortriede, Minzhe Guo, Eric E Bardes, Michal Kouril, Scott Tabar, Kevin Burns, Maryanne E Ardini-Poleske, Stephanie Loos, Daniel Schnell, Kang Jin, Balaji Iyer, Yina Du, Bing-Xing Huo, Anukana Bhattacharjee, Jeff Korte, Ruchi Munshi, Victoria Smith, Andrew Herbst, Joseph A Kitzmiller, Geremy C Clair, James P Carson, Joshua Adkins, Edward E Morrisey, Gloria S Pryhuber, Ravi Misra, Jeffrey A Whitsett, Xin Sun, Trevor Heathorn, Benedict Paten, V B Surya Prasath, Yan Xu, Tim Tickle, Bruce J Aronow, Nathan Salomonis, null null
LungMAP Portal Ecosystem: Systems-Level Exploration of the Lung. American journal of respiratory cell and molecular biology (2022)
Laurel Romano, Katie M Giger, Julien Papoin, David E Muench, Diamantis Konstantinidis, André Olsson, Katrina Schlum, Kashish Chetal, Joel Anne Chasis, Narla Mohandas, Betsy J Barnes, Yi Zheng, H Leighton Grimes, Nathan Salomonis, Lionel Blanc, Theodosia A Kalfa
Erythroblastic islands foster granulopoiesis in parallel to terminal erythropoiesis. Blood 140 (14) (2022)
Andrea Toth, Shelby Steinmeyer, Paranthaman Kannan, Jerilyn Gray, Courtney M Jackson, Shibabrata Mukherjee, Martin Demmert, Joshua R Sheak, Daniel Benson, Joseph Kitzmiller, Joseph A Wayman, Pietro Presicce, Christopher Cates, Rhea Rubin, Kashish Chetal, Yina Du, Yifei Miao, Mingxia Gu, Minzhe Guo, Vladimir V Kalinichenko, Suhas G Kallapur, Emily R Miraldi, Yan Xu, Daniel T Swarr, Ian P Lewkowich, Nathan Salomonis, Lisa A Miller, Jennifer M S Sucre, Jeffrey A Whitsett, Claire A Chougnet, Alan H Jobe, Hitesh Deshmukh, William J Zacharias
Inflammatory blockade prevents injury to the developing pulmonary gas exchange surface in preterm primates. Science translational medicine 14 (638) (2022)
Kang Jin, Daniel Schnell, Guangyuan Li, Nathan Salomonis, V B Surya Prasath, Rhonda Szczesniak, Bruce J Aronow
CellDrift: inferring perturbation responses in temporally sampled single-cell data. Briefings in bioinformatics 23 (5) (2022)
Alison J Perl, Eric W Brunskill, Praneet Chaturvedi, Nathan Salomonis, Raphael Kopan
Progenitor translatome changes coordinated by Tsc1 increase perception of Wnt signals to end nephrogenesis. Nature communications 12 (1) (2021)
Aidan M Fenix, Yuichiro Miyaoka, Alessandro Bertero, Steven M Blue, Matthew J Spindler, Kenneth K B Tan, Juan A Perez-Bermejo, Amanda H Chan, Steven J Mayerl, Trieu D Nguyen, Caitlin R Russell, Paweena P Lizarraga, Annie Truong, Po-Lin So, Aishwarya Kulkarni, Kashish Chetal, Shashank Sathe, Nathan J Sniadecki, Gene W Yeo, Charles E Murry, Bruce R Conklin, Nathan Salomonis
Gain-of-function cardiomyopathic mutations in RBM20 rewire splicing regulation and re-distribute ribonucleoprotein granules within processing bodies. Nature communications 12 (1) (2021)
Roberto Avelino, Roger Mulet-Lazaro, Marije Havermans, Remco Hoogenboezem, Leonie Smeenk, Nathan Salomonis, Rebekka K Schneider, Elwin J C Rombouts, Eric Bindels, H Leighton Grimes, Ruud Delwel
Induced cell-autonomous neutropenia systemically perturbs hematopoiesis in Cebpa enhancer-null mice. Blood advances (2021)
Jizhou Zhang, Qingqing Wu, Courtney B Johnson, Giang Pham, Jeremy M Kinder, Andre Olsson, Anastasiya Slaughter, Margot May, Benjamin Weinhaus, Angelo D'Alessandro, James Douglas Engel, Jean X Jiang, J Matthew Kofron, L Frank Huang, V B Surya Prasath, Sing Sing Way, Nathan Salomonis, H Leighton Grimes, Daniel Lucas
In situ mapping identifies distinct vascular niches for myelopoiesis. Nature 590 (7846) (2021)
Derek Reiman, Godhev Kumar Manakkat Vijay, Heping Xu, Andrew Sonin, Dianyu Chen, Nathan Salomonis, Harinder Singh, Aly A Khan
Pseudocell Tracer-A method for inferring dynamic trajectories using scRNAseq and its application to B cells undergoing immunoglobulin class switch recombination. PLoS computational biology 17 (5) (2021)
Svetlana S Itskovich, Arun Gurunathan, Jason Clark, Matthew Burwinkel, Mark Wunderlich, Mikaela R Berger, Aishwarya Kulkarni, Kashish Chetal, Meenakshi Venkatasubramanian, Nathan Salomonis, Ashish R Kumar, Lynn H Lee
MBNL1 regulates essential alternative RNA splicing patterns in MLL-rearranged leukemia. Nature communications 11 (1) (2020)
Svetlana S Itskovich, Arun Gurunathan, Jason Clark, Matthew Burwinkel, Mark Wunderlich, Mikaela R Berger, Aishwarya Kulkarni, Kashish Chetal, Meenakshi Venkatasubramanian, Nathan Salomonis, Ashish R Kumar, Lynn H Lee
Publisher Correction: MBNL1 regulates essential alternative RNA splicing patterns in MLL-rearranged leukemia. Nature communications 11 (1) (2020)
Michael J Petrany, Casey O Swoboda, Chengyi Sun, Kashish Chetal, Xiaoting Chen, Matthew T Weirauch, Nathan Salomonis, Douglas P Millay
Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers. Nature communications 11 (1) (2020)
Daniel Lucas, Nathan Salomonis, H Leighton Grimes
Unraveling bone marrow architecture. Nature cell biology 22 (1) (2020)
Andrew Holowiecki, Kelsey Linstrum, Padmapriyadarshini Ravisankar, Kashish Chetal, Nathan Salomonis, Joshua S Waxman
Pbx4 limits heart size and fosters arch artery formation by partitioning second heart field progenitors and restricting proliferation. Development (Cambridge, England) 147 (5) (2020)
David E Muench, Andre Olsson, Kyle Ferchen, Giang Pham, Rachel A Serafin, Somchai Chutipongtanate, Pankaj Dwivedi, Baobao Song, Stuart Hay, Kashish Chetal, Lisa R Trump-Durbin, Jayati Mookerjee-Basu, Kejian Zhang, Jennifer C Yu, Carolyn Lutzko, Kasiani C Myers, Kristopher L Nazor, Kenneth D Greis, Dietmar J Kappes, Sing Sing Way, Nathan Salomonis, H Leighton Grimes
Mouse models of neutropenia reveal progenitor-stage-specific defects. Nature 582 (7810) (2020)
Alexia Hulin, Luis Hortells, M Victoria Gomez-Stallons, Anna O'Donnell, Kashish Chetal, Mike Adam, Patrizio Lancellotti, Cecile Oury, S Steven Potter, Nathan Salomonis, Katherine E Yutzey
Maturation of heart valve cell populations during postnatal remodeling. Development (Cambridge, England) 146 (12) (2019)
Emmalee R Adelman, Hsuan-Ting Huang, Alejandro Roisman, André Olsson, Antonio Colaprico, Tingting Qin, R Coleman Lindsley, Rafael Bejar, Nathan Salomonis, H Leighton Grimes, Maria E Figueroa
Aging Human Hematopoietic Stem Cells Manifest Profound Epigenetic Reprogramming of Enhancers That May Predispose to Leukemia. Cancer discovery 9 (8) (2019)
David E Muench, Kyle Ferchen, Chinavenmeni S Velu, Kith Pradhan, Kashish Chetal, Xiaoting Chen, Matthew T Weirauch, Clemencia Colmenares, Amit Verma, Nathan Salomonis, H Leighton Grimes
SKI controls MDS-associated chronic TGF-β signaling, aberrant splicing, and stem cell fitness. Blood 132 (21) (2018)