Mohammed El-Kebir

Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 19

Top Venues

Journal of computational biology : a journal of computational molecular cell biology

PLoS computational biology

Nature communications

Genome research

University of Illinois at Urbana-Champaign

Centrum Wiskunde en Informatica (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Illinois at Urbana-Champaign Jan 16 2018

United States

Assistant Professor :: Computer Science

Princeton University Oct 01 2016 - Jan 12 2018

United States

Postdoctoral Research Associate :: Computer Science

Brown University Oct 15 2014 - Oct 01 2016

United States

Postdoctoral Research Associate :: Computer Science

Education History

Centrum Wiskunde en Informatica Jun 01 2010 - Oct 01 2014

Netherlands

PHD

Vrije Universiteit Amsterdam Sep 01 2006 - Aug 31 2010

Netherlands

MSC :: Bioinformatics

Technische Universiteit Eindhoven Jan 09 2007 - Aug 31 2009

Netherlands

MSC :: Computer Science and Engineering

Technische Universiteit Eindhoven Sep 01 2003 - Aug 31 2006

Netherlands

BSC :: Computer Science and Engineering

Publications

Mrinmoy Saha Roddur, Sagi Snir, Mohammed El-Kebir
Enforcing Temporal Consistency in Migration History Inference. Journal of computational biology : a journal of computational molecular cell biology (2024)
Mrinmoy Saha Roddur, Sagi Snir, Mohammed El-Kebir
Enforcing Temporal Consistency in Migration History Inference. Journal of computational biology : a journal of computational molecular cell biology 31 (5) (2024)
Xinyu Gu, Yuanyuan Qi, Mohammed El-Kebir
DERNA Enables Pareto Optimal RNA Design. Journal of computational biology : a journal of computational molecular cell biology 31 (3) (2024)
Xinyu Gu, Yuanyuan Qi, Mohammed El-Kebir
DERNA Enables Pareto Optimal RNA Design. Journal of computational biology : a journal of computational molecular cell biology 31 (3) (2024)
Xinyu Gu, Yuanyuan Qi, Mohammed El-Kebir
DERNA Enables Pareto Optimal RNA Design. Journal of computational biology : a journal of computational molecular cell biology (2024)
Xinyu Gu, Yuanyuan Qi, Mohammed El-Kebir
DERNA Enables Pareto Optimal RNA Design. Journal of computational biology : a journal of computational molecular cell biology 31 (3) (2024)
Mrinmoy Saha Roddur, Sagi Snir, Mohammed El-Kebir
Enforcing Temporal Consistency in Migration History Inference. Journal of computational biology : a journal of computational molecular cell biology 31 (5) (2024)
Mrinmoy Saha Roddur, Sagi Snir, Mohammed El-Kebir
Enforcing Temporal Consistency in Migration History Inference. Journal of computational biology : a journal of computational molecular cell biology 31 (5) (2024)
Leah L Weber, Chuanyi Zhang, Idoia Ochoa, Mohammed El-Kebir
Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors. PLoS computational biology 19 (10) (2023)
Yuanyuan Qi, Mohammed El-Kebir
Consensus Tree Under the Ancestor-Descendant Distance is NP-Hard. Journal of computational biology : a journal of computational molecular cell biology (2023)
Martin Stroet, Bertrand Caron, Martin S Engler, Jimi van der Woning, Aude Kauffmann, Marc van Dijk, Mohammed El-Kebir, Koen M Visscher, Josef Holownia, Callum Macfarlane, Brian J Bennion, Svetlana Gelpi-Dominguez, Felice C Lightstone, Tijs van der Storm, Daan P Geerke, Alan E Mark, Gunnar W Klau
OFraMP: a fragment-based tool to facilitate the parametrization of large molecules. Journal of computer-aided molecular design (2023)
Leah L Weber, Derek Reiman, Mrinmoy S Roddur, Yuanyuan Qi, Mohammed El-Kebir, Aly A Khan
TRIBAL: Tree Inference of B cell Clonal Lineages. bioRxiv : the preprint server for biology (2023)
Stefan Ivanovic, Mohammed El-Kebir
Modeling and predicting cancer clonal evolution with reinforcement learning. Genome research (2023)
Zubair Lalani, Gillian Chu, Silas Hsu, Shaw Kagawa, Michael Xiang, Simone Zaccaria, Mohammed El-Kebir
CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data. PLoS computational biology 18 (10) (2022)
Chuanyi Zhang, Palash Sashittal, Michael Xiang, Yichi Zhang, Ayesha Kazi, Mohammed El-Kebir
Accurate Identification of Transcription Regulatory Sequences and Genes in Coronaviruses. Molecular biology and evolution 39 (7) (2022)
Leah L Weber, Mohammed El-Kebir
Distinguishing linear and branched evolution given single-cell DNA sequencing data of tumors. Algorithms for molecular biology : AMB 16 (1) (2021)
Palash Sashittal, Chuanyi Zhang, Jian Peng, Mohammed El-Kebir
Jumper enables discontinuous transcript assembly in coronaviruses. Nature communications 12 (1) (2021)
Chuanyi Zhang, Mohammed El-Kebir, Idoia Ochoa
Moss enables high sensitivity single-nucleotide variant calling from multiple bulk DNA tumor samples. Nature communications 12 (1) (2021)
Leah L Weber, Nuraini Aguse, Nicholas Chia, Mohammed El-Kebir
PhyDOSE: Design of follow-up single-cell sequencing experiments of tumors. PLoS computational biology 16 (10) (2020)

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Publication Activity (10 Years)

Top Topics

Top Venues

Mohammed El-Kebir