Dionne K Vafeados (Dionne Vafeados)

Publication Activity (10 Years)

Years Active: 2023-2024
Publications (10 Years): 13

Top Topics

Top Venues

Science (New York, N.Y.)

Nature communications

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Nathaniel R Bennett, Joseph L Watson, Robert J Ragotte, Andrew J Borst, DéJenaé L See, Connor E Weidle, Riti Biswas, Ellen L Shrock, Philip J Y Leung, Buwei Huang, Inna Goreshnik, Russell Ault, Kenneth D Carr, Benedikt Singer, Cameron Criswell, Dionne K Vafeados, Mariana Garcia Sanchez, Ho Min Kim, Susana Vázquez Torres, Sidney Chan, Julien S Baker
Atomically accurate de novo design of single-domain antibodies. bioRxiv : the preprint server for biology (2024)
Linna An, Meerit Y Said, Long Tran, Sagardip Majumder, Inna Goreshnik, Gyu Rie Lee, David C Juergens, Justas Dauparas, Ivan Anishchenko, Brian Coventry, Asim K Bera, Alex Kang, Paul M Levine, Valentina Alvarez, Arvind S Pillai, Christoffer H Norn, David Feldman, Dmitri Zorine, Derrick R Hicks, Xinting Li, Mariana Garcia Sanchez, Dionne K Vafeados, Patrick J Salveson, Anastassia Andreevna Vorobieva, Julien S Baker
Binding and sensing diverse small molecules using shape-complementary pseudocycles. Science (New York, N.Y.) 385 (6706) (2024)
Linna An, Meerit Y Said, Long Tran, Sagardip Majumder, Inna Goreshnik, Gyu Rie Lee, David C Juergens, Justas Dauparas, Ivan Anishchenko, Brian Coventry, Asim K Bera, Alex Kang, Paul M Levine, Valentina Alvarez, Arvind S Pillai, Christoffer H Norn, David Feldman, Dmitri Zorine, Derrick R Hicks, Xinting Li, Mariana Garcia Sanchez, Dionne K Vafeados, Patrick J Salveson, Anastassia Andreevna Vorobieva, Julien S Baker
Binding and sensing diverse small molecules using shape-complementary pseudocycles. Science (New York, N.Y.) 385 (6706) (2024)
Nathaniel R Bennett, Joseph L Watson, Robert J Ragotte, Andrew J Borst, DéJenaé L See, Connor E Weidle, Riti Biswas, Ellen L Shrock, Philip J Y Leung, Buwei Huang, Inna Goreshnik, Russell Ault, Kenneth D Carr, Benedikt Singer, Cameron Criswell, Dionne K Vafeados, Mariana Garcia Sanchez, Ho Min Kim, Susana Vázquez Torres, Sidney Chan, Julien S Baker
Atomically accurate de novo design of single-domain antibodies. bioRxiv : the preprint server for biology (2024)
Rohith Krishna, Jue Wang, Woody Ahern, Pascal Sturmfels, Preetham Venkatesh, Indrek Kalvet, Gyu Rie Lee, Felix S Morey-Burrows, Ivan Anishchenko, Ian R Humphreys, Ryan McHugh, Dionne K Vafeados, Xinting Li, George A Sutherland, Andrew Hitchcock, Christopher Neil Hunter, Alex Kang, Evans Brackenbrough, Asim K Bera, Minkyung Baek, Frank Dimaio, Julien S Baker
Generalized biomolecular modeling and design with RoseTTAFold All-Atom. Science (New York, N.Y.) 384 (6693) (2024)
Rohith Krishna, Jue Wang, Woody Ahern, Pascal Sturmfels, Preetham Venkatesh, Indrek Kalvet, Gyu Rie Lee, Felix S Morey-Burrows, Ivan Anishchenko, Ian R Humphreys, Ryan McHugh, Dionne K Vafeados, Xinting Li, George A Sutherland, Andrew Hitchcock, Christopher Neil Hunter, Alex Kang, Evans Brackenbrough, Asim K Bera, Minkyung Baek, Frank Dimaio, Julien S Baker
Generalized biomolecular modeling and design with RoseTTAFold All-Atom. Science (New York, N.Y.) (2024)
Rohith Krishna, Jue Wang, Woody Ahern, Pascal Sturmfels, Preetham Venkatesh, Indrek Kalvet, Gyu Rie Lee, Felix S Morey-Burrows, Ivan Anishchenko, Ian R Humphreys, Ryan McHugh, Dionne K Vafeados, Xinting Li, George A Sutherland, Andrew Hitchcock, Christopher Neil Hunter, Alex Kang, Evans Brackenbrough, Asim K Bera, Minkyung Baek, Frank Dimaio, Julien S Baker
Generalized biomolecular modeling and design with RoseTTAFold All-Atom. Science (New York, N.Y.) 384 (6693) (2024)
Rohith Krishna, Jue Wang, Woody Ahern, Pascal Sturmfels, Preetham Venkatesh, Indrek Kalvet, Gyu Rie Lee, Felix S Morey-Burrows, Ivan Anishchenko, Ian R Humphreys, Ryan McHugh, Dionne K Vafeados, Xinting Li, George A Sutherland, Andrew Hitchcock, Christopher Neil Hunter, Alex Kang, Evans Brackenbrough, Asim K Bera, Minkyung Baek, Frank Dimaio, Julien S Baker
Generalized biomolecular modeling and design with RoseTTAFold All-Atom. Science (New York, N.Y.) 384 (6693) (2024)
Nathaniel R Bennett, Brian Coventry, Inna Goreshnik, Buwei Huang, Aza Allen, Dionne K Vafeados, Ying Po Peng, Justas Dauparas, Minkyung Baek, Lance J Stewart, Frank DiMaio, Steven De Munck, Savvas N Savvides, Julien S Baker
Improving de novo protein binder design with deep learning. Nature communications 14 (1) (2023)
Nathaniel R Bennett, Brian Coventry, Inna Goreshnik, Buwei Huang, Aza Allen, Dionne K Vafeados, Ying Po Peng, Justas Dauparas, Minkyung Baek, Lance J Stewart, Frank DiMaio, Steven De Munck, Savvas N Savvides, Julien S Baker
Improving de novo protein binder design with deep learning. Nature communications 14 (1) (2023)
Nathaniel R Bennett, Brian Coventry, Inna Goreshnik, Buwei Huang, Aza Allen, Dionne K Vafeados, Ying Po Peng, Justas Dauparas, Minkyung Baek, Lance J Stewart, Frank DiMaio, Steven De Munck, Savvas N Savvides, Julien S Baker
Improving de novo protein binder design with deep learning. Nature communications 14 (1) (2023)
Cameron J Glasscock, Robert Pecoraro, Ryan McHugh, Lindsey A Doyle, Wei Chen, Olivier Boivin, Beau Lonnquist, Emily Na, Yuliya Politanska, Hugh K Haddox, David Cox, Christoffer H Norn, Brian Coventry, Inna Goreshnik, Dionne K Vafeados, Gyu Rie Lee, Raluca Gordân, Barry L Stoddard, Frank DiMaio, David Baker
Computational design of sequence-specific DNA-binding proteins. bioRxiv : the preprint server for biology (2023)
Nathaniel R Bennett, Brian Coventry, Inna Goreshnik, Buwei Huang, Aza Allen, Dionne K Vafeados, Ying Po Peng, Justas Dauparas, Minkyung Baek, Lance J Stewart, Frank DiMaio, Steven De Munck, Savvas N Savvides, Julien S Baker
Improving de novo protein binder design with deep learning. Nature communications 14 (1) (2023)