Dongze He

Publication Activity (10 Years)

Years Active: 2022-2024
Publications (10 Years): 18

Top Topics

Dna Methylation

Top Venues

bioRxiv : the preprint server for biology

Bioinformatics (Oxford, England)

Biostatistics (Oxford, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Dongze He, Stephen M Mount, Rob Patro
scCensus: Off-target scRNA-seq reads reveal meaningful biology. bioRxiv : the preprint server for biology (2024)
Dongze He, Stephen M Mount, Rob Patro
scCensus: Off-target scRNA-seq reads reveal meaningful biology. bioRxiv : the preprint server for biology (2024)
Dongze He, Yuan Gao, Spencer Skylar Chan, Natalia Quintana-Parrilla, Rob Patro
Forseti: A mechanistic and predictive model of the splicing status of scRNA-seq reads. bioRxiv : the preprint server for biology (2024)
Dongze He, Yuan Gao, Spencer Skylar Chan, Natalia Quintana-Parrilla, Rob Patro
Forseti: a mechanistic and predictive model of the splicing status of scRNA-seq reads. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Simone Tiberi, Joël Meili, Peiying Cai, Charlotte Soneson, Dongze He, Hirak Sarkar, Alejandra Avalos-Pacheco, Rob Patro, Mark D Robinson
DifferentialRegulation: a Bayesian hierarchical approach to identify differentially regulated genes. Biostatistics (Oxford, England) (2024)
Dongze He, Yuan Gao, Spencer Skylar Chan, Natalia Quintana-Parrilla, Rob Patro
Forseti: a mechanistic and predictive model of the splicing status of scRNA-seq reads. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Dongze He, Yuan Gao, Spencer Skylar Chan, Natalia Quintana-Parrilla, Rob Patro
Forseti: a mechanistic and predictive model of the splicing status of scRNA-seq reads. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Dongze He, Yuan Gao, Spencer Skylar Chan, Natalia Quintana-Parrilla, Rob Patro
Forseti: a mechanistic and predictive model of the splicing status of scRNA-seq reads. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Dongze He, Yuan Gao, Spencer Skylar Chan, Natalia Quintana-Parrilla, Rob Patro
Forseti: A mechanistic and predictive model of the splicing status of scRNA-seq reads. bioRxiv : the preprint server for biology (2024)
Dongze He, Yuan Gao, Spencer Skylar Chan, Natalia Quintana-Parrilla, Rob Patro
Forseti: a mechanistic and predictive model of the splicing status of scRNA-seq reads. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Dongze He, Yuan Gao, Spencer Skylar Chan, Natalia Quintana-Parrilla, Rob Patro
Forseti: A mechanistic and predictive model of the splicing status of scRNA-seq reads. bioRxiv : the preprint server for biology (2024)
Dongze He, Yuan Gao, Spencer Skylar Chan, Natalia Quintana-Parrilla, Rob Patro
Forseti: A mechanistic and predictive model of the splicing status of scRNA-seq reads. bioRxiv : the preprint server for biology (2024)
Simone Tiberi, Joël Meili, Peiying Cai, Charlotte Soneson, Dongze He, Hirak Sarkar, Alejandra Avalos-Pacheco, Rob Patro, Mark D Robinson
DifferentialRegulation: a Bayesian hierarchical approach to identify differentially regulated genes. Biostatistics (Oxford, England) (2024)
Dongze He, Charlotte Soneson, Rob Patro
Understanding and evaluating ambiguity in single-cell and single-nucleus RNA-sequencing. bioRxiv : the preprint server for biology (2023)
Dongze He, Charlotte Soneson, Rob Patro
Understanding and evaluating ambiguity in single-cell and single-nucleus RNA-sequencing. bioRxiv : the preprint server for biology (2023)
Simone Tiberi, Joël Meili, Peiying Cai, Charlotte Soneson, Dongze He, Hirak Sarkar, Alejandra Avalos-Pacheco, Rob Patro, Mark D Robinson
DifferentialRegulation: a Bayesian hierarchical approach to identify differentially regulated genes. bioRxiv : the preprint server for biology (2023)
Dongze He, Rob Patro
simpleaf: A simple, flexible, and scalable framework for single-cell transcriptomics data processing using alevin-fry. bioRxiv : the preprint server for biology (2023)
Dongze He, Mohsen Zakeri, Hirak Sarkar, Charlotte Soneson, Avi Srivastava, Rob Patro
Alevin-fry unlocks rapid, accurate and memory-frugal quantification of single-cell RNA-seq data. Nature methods 19 (3) (2022)