Mark D Robinson (Mark Robinson)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 93

Top Venues

Genome biology

F1000Research

Nature communications

Life science alliance

University of Zurich

University of Melbourne (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Zurich May 01 2017

Switzerland

Associate Professor :: Department of Molecular Life Sciences

Swiss Institute of Bioinformatics Jul 01 2012

Switzerland

Group Leader :: Statistical Bioinformatics Group

University of Zurich Oct 01 2011 - Apr 30 2017

Switzerland

Assistant Professor :: Institute of Molecular Life Sciences

Garvan Institute of Medical Research Jun 01 2008 - Jul 31 2011

Australia

Postdoc :: Cancer Program

University of Toronto May 01 2004 - Feb 28 2005

Canada

Research Assistant :: Probabilistic and Statistical Inference Group

MDS Proteomics Jul 01 2003 - Apr 30 2004

Canada

Bioinformatics Associate :: Scientific Computing

University of Toronto Jul 01 2001 - Jun 30 2003

Canada

Data Analyst :: Banting and Best Department of Medical Research

Education History

University of Melbourne Mar 01 2005 - Oct 01 2008

Australia

PHD :: Medical Biology

University of British Columbia Sep 01 1999 - Apr 30 2001

Canada

MSC :: Statistics

University of Guelph Sep 01 1994 - Apr 30 1999

Canada

BSC :: Mathematics and Statistics

Publications

Xuan Li, Sander Visser, Jae Hak Son, Elzemiek Geuverink, Ece Naz Kıvanç, Yanli Wu, Stephan Schmeing, Martin Pippel, Seyed Yahya Anvar, Martijn A Schenkel, František Marec, Mark D Robinson, Richard P Meisel, Ernst A Wimmer, Louis van de Zande, Daniel Bopp, Leo W Beukeboom
Divergent evolution of male-determining loci on proto-Y chromosomes of the housefly. Nature communications 15 (1) (2024)
Simone Tiberi, Joël Meili, Peiying Cai, Charlotte Soneson, Dongze He, Hirak Sarkar, Alejandra Avalos-Pacheco, Rob Patro, Mark D Robinson
DifferentialRegulation: a Bayesian hierarchical approach to identify differentially regulated genes. Biostatistics (Oxford, England) (2024)
Felix Gerbaldo, Emanuel Sonder, Vincent Fischer, Selina Frei, Jiayi Wang, Katharina Gapp, Mark D Robinson, Pierre-Luc Germain
On the identification of differentially-active transcription factors from ATAC-seq data. bioRxiv : the preprint server for biology (2024)
Brandon Signal, Andrew J Phipps, Katherine A Giles, Shannon N Huskins, Timothy R Mercer, Mark D Robinson, Adele Woodhouse, Phillippa C Taberlay
Ageing-Related Changes to H3K4me3, H3K27ac, and H3K27me3 in Purified Mouse Neurons. Cells 13 (16) (2024)
Peiying Cai, Mark D Robinson, Simone Tiberi
DESpace: spatially variable gene detection via differential expression testing of spatial clusters. Bioinformatics (Oxford, England) 40 (2) (2024)
Xuan Li, Sander Visser, Jae Hak Son, Elzemiek Geuverink, Ece Naz Kıvanç, Yanli Wu, Stephan Schmeing, Martin Pippel, Seyed Yahya Anvar, Martijn A Schenkel, František Marec, Mark D Robinson, Richard P Meisel, Ernst A Wimmer, Louis van de Zande, Daniel Bopp, Leo W Beukeboom
Divergent evolution of male-determining loci on proto-Y chromosomes of the housefly. Nature communications 15 (1) (2024)
Brandon Signal, Andrew J Phipps, Katherine A Giles, Shannon N Huskins, Timothy R Mercer, Mark D Robinson, Adele Woodhouse, Phillippa C Taberlay
Ageing-Related Changes to H3K4me3, H3K27ac, and H3K27me3 in Purified Mouse Neurons. Cells 13 (16) (2024)
Peiying Cai, Mark D Robinson, Simone Tiberi
DESpace: spatially variable gene detection via differential expression testing of spatial clusters. Bioinformatics (Oxford, England) 40 (2) (2024)
Mark D Robinson, Peiying Cai, Martin Emons, Reto Gerber, Pierre-Luc Germain, Samuel Gunz, Siyuan Luo, Giulia Moro, Emanuel Sonder, Anthony Sonrel, Jiayi Wang, David Wissel, Izaskun Mallona
Ten simple rules for computational biologists collaborating with wet lab researchers. PLoS computational biology 20 (6) (2024)
Brandon Signal, Andrew J Phipps, Katherine A Giles, Shannon N Huskins, Timothy R Mercer, Mark D Robinson, Adele Woodhouse, Phillippa C Taberlay
Ageing-Related Changes to H3K4me3, H3K27ac, and H3K27me3 in Purified Mouse Neurons. Cells 13 (16) (2024)
Peiying Cai, Mark D Robinson, Simone Tiberi
DESpace: spatially variable gene detection via differential expression testing of spatial clusters. Bioinformatics (Oxford, England) 40 (2) (2024)
Xuan Li, Sander Visser, Jae Hak Son, Elzemiek Geuverink, Ece Naz Kıvanç, Yanli Wu, Stephan Schmeing, Martin Pippel, Seyed Yahya Anvar, Martijn A Schenkel, František Marec, Mark D Robinson, Richard P Meisel, Ernst A Wimmer, Louis van de Zande, Daniel Bopp, Leo W Beukeboom
Divergent evolution of male-determining loci on proto-Y chromosomes of the housefly. Nature communications 15 (1) (2024)
Felix Gerbaldo, Emanuel Sonder, Vincent Fischer, Selina Frei, Jiayi Wang, Katharina Gapp, Mark D Robinson, Pierre-Luc Germain
On the identification of differentially-active transcription factors from ATAC-seq data. bioRxiv : the preprint server for biology (2024)
Simone Tiberi, Joël Meili, Peiying Cai, Charlotte Soneson, Dongze He, Hirak Sarkar, Alejandra Avalos-Pacheco, Rob Patro, Mark D Robinson
DifferentialRegulation: a Bayesian hierarchical approach to identify differentially regulated genes. Biostatistics (Oxford, England) (2024)
Mark D Robinson, Peiying Cai, Martin Emons, Reto Gerber, Pierre-Luc Germain, Samuel Gunz, Siyuan Luo, Giulia Moro, Emanuel Sonder, Anthony Sonrel, Jiayi Wang, David Wissel, Izaskun Mallona
Ten simple rules for computational biologists collaborating with wet lab researchers. PLoS computational biology 20 (6) (2024)
Peiying Cai, Mark D Robinson, Simone Tiberi
DESpace: spatially variable gene detection via differential expression testing of spatial clusters. Bioinformatics (Oxford, England) 40 (2) (2024)
Anthony Sonrel, Almut Luetge, Charlotte Soneson, Izaskun Mallona, Pierre-Luc Germain, Sergey Knyazev, Jeroen Gilis, Reto Gerber, Ruth Seurinck, Dominique Paul, Emanuel Sonder, Helena L Crowell, Imran Fanaswala, Ahmad Al-Ajami, Elyas Heidari, Stephan Schmeing, Stefan Milosavljevic, Yvan Saeys, Serghei Mangul, Mark D Robinson
Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability. Genome biology 24 (1) (2023)
Mechthild Lütge, Angelina De Martin, Cristina Gil-Cruz, Christian Perez-Shibayama, Yves Stanossek, Lucas Onder, Hung-Wei Cheng, Lisa Kurz, Nadine Cadosch, Charlotte Soneson, Mark D Robinson, Sandro J Stoeckli, Burkhard Ludewig, Natalia Barbara Pikor
Conserved stromal-immune cell circuits secure B cell homeostasis and function. Nature immunology (2023)
Stephan Schmeing, Mark D Robinson
Gapless provides combined scaffolding, gap filling, and assembly correction with long reads. Life science alliance 6 (7) (2023)
Agnese Kocere, Elena Chiavacci, Kevin Manuel Méndez-Acevedo, Charlotte Soneson, Max S Hiltabidle, Ekambaram Perumal, Jacalyn S MacGowan, Jordan A Shavit, Daniela Panakova, Margot Kossmann Williams, Mark D Robinson, Christian Mosimann, Alexa Burger
TAR Syndrome-associated Rbm8a deficiency causes hematopoietic defects and attenuates Wnt/PCP signaling. bioRxiv : the preprint server for biology (2023)
Agnese Kocere, Elena Chiavacci, Kevin Manuel Méndez-Acevedo, Charlotte Soneson, Max S Hiltabidle, Ekambaram Perumal, Jacalyn S MacGowan, Jordan A Shavit, Daniela Panakova, Margot Kossmann Williams, Mark D Robinson, Christian Mosimann, Alexa Burger
TAR Syndrome-associated Rbm8a deficiency causes hematopoietic defects and attenuates Wnt/PCP signaling. bioRxiv : the preprint server for biology (2023)
Vladimir B C de Souza, Ben T Jordan, Elizabeth Tseng, Elizabeth A Nelson, Karen K Hirschi, Gloria Sheynkman, Mark D Robinson
Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data. Genome biology 24 (1) (2023)
Vladimir B C de Souza, Ben T Jordan, Elizabeth Tseng, Elizabeth A Nelson, Karen K Hirschi, Gloria Sheynkman, Mark D Robinson
Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data. Genome biology 24 (1) (2023)
Vladimir B C de Souza, Ben T Jordan, Elizabeth Tseng, Elizabeth A Nelson, Karen K Hirschi, Gloria Sheynkman, Mark D Robinson
Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data. Genome biology 24 (1) (2023)
Simone Tiberi, Joël Meili, Peiying Cai, Charlotte Soneson, Dongze He, Hirak Sarkar, Alejandra Avalos-Pacheco, Rob Patro, Mark D Robinson
DifferentialRegulation: a Bayesian hierarchical approach to identify differentially regulated genes. bioRxiv : the preprint server for biology (2023)
Anthony Sonrel, Almut Luetge, Charlotte Soneson, Izaskun Mallona, Pierre-Luc Germain, Sergey Knyazev, Jeroen Gilis, Reto Gerber, Ruth Seurinck, Dominique Paul, Emanuel Sonder, Helena L Crowell, Imran Fanaswala, Ahmad Al-Ajami, Elyas Heidari, Stephan Schmeing, Stefan Milosavljevic, Yvan Saeys, Serghei Mangul, Mark D Robinson
Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability. Genome biology 24 (1) (2023)
Anthony Sonrel, Almut Luetge, Charlotte Soneson, Izaskun Mallona, Pierre-Luc Germain, Sergey Knyazev, Jeroen Gilis, Reto Gerber, Ruth Seurinck, Dominique Paul, Emanuel Sonder, Helena L Crowell, Imran Fanaswala, Ahmad Al-Ajami, Elyas Heidari, Stephan Schmeing, Stefan Milosavljevic, Yvan Saeys, Serghei Mangul, Mark D Robinson
Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability. Genome biology 24 (1) (2023)
Helena Lucia Crowell, Sarah X Morillo Leonardo, Charlotte Soneson, Mark D Robinson
The shaky foundations of simulating single-cell RNA sequencing data. Genome biology 24 (1) (2023)
Stephan Schmeing, Mark D Robinson
Gapless provides combined scaffolding, gap filling, and assembly correction with long reads. Life science alliance 6 (7) (2023)
Stephan Schmeing, Mark D Robinson
Gapless provides combined scaffolding, gap filling, and assembly correction with long reads. Life science alliance 6 (7) (2023)
Will Macnair, Mark D Robinson
SampleQC: robust multivariate, multi-cell type, multi-sample quality control for single-cell data. Genome biology 24 (1) (2023)
Will Macnair, Mark D Robinson
SampleQC: robust multivariate, multi-cell type, multi-sample quality control for single-cell data. Genome biology 24 (1) (2023)
Will Macnair, Mark D Robinson
SampleQC: robust multivariate, multi-cell type, multi-sample quality control for single-cell data. Genome biology 24 (1) (2023)
Agnese Kocere, Elena Chiavacci, Kevin Manuel Méndez-Acevedo, Charlotte Soneson, Max S Hiltabidle, Ekambaram Perumal, Jacalyn S MacGowan, Jordan A Shavit, Daniela Panakova, Margot Kossmann Williams, Mark D Robinson, Christian Mosimann, Alexa Burger
TAR Syndrome-associated Rbm8a deficiency causes hematopoietic defects and attenuates Wnt/PCP signaling. bioRxiv : the preprint server for biology (2023)
Vladimir B C de Souza, Ben T Jordan, Elizabeth Tseng, Elizabeth A Nelson, Karen K Hirschi, Gloria Sheynkman, Mark D Robinson
Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data. Genome biology 24 (1) (2023)
Agnese Kocere, Elena Chiavacci, Kevin Manuel Méndez-Acevedo, Charlotte Soneson, Max S Hiltabidle, Ekambaram Perumal, Jacalyn S MacGowan, Jordan A Shavit, Daniela Panakova, Margot Kossmann Williams, Mark D Robinson, Christian Mosimann, Alexa Burger
TAR Syndrome-associated Rbm8a deficiency causes hematopoietic defects and attenuates Wnt/PCP signaling. bioRxiv : the preprint server for biology (2023)
Vladimir B C de Souza, Ben T Jordan, Elizabeth Tseng, Elizabeth A Nelson, Karen K Hirschi, Gloria Sheynkman, Mark D Robinson
Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data. Genome biology 24 (1) (2023)
Stephan Schmeing, Mark D Robinson
Gapless provides combined scaffolding, gap filling, and assembly correction with long reads. Life science alliance 6 (7) (2023)
Helena Lucia Crowell, Sarah X Morillo Leonardo, Charlotte Soneson, Mark D Robinson
The shaky foundations of simulating single-cell RNA sequencing data. Genome biology 24 (1) (2023)
Will Macnair, Mark D Robinson
SampleQC: robust multivariate, multi-cell type, multi-sample quality control for single-cell data. Genome biology 24 (1) (2023)
Vladimir B C de Souza, Ben T Jordan, Elizabeth Tseng, Elizabeth A Nelson, Karen K Hirschi, Gloria Sheynkman, Mark D Robinson
Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data. Genome biology 24 (1) (2023)
Ahmed Moursy, Antoine Cléry, Stefan Gerhardy, Katharina M Hembach, Sanjana Rao, Jarosław Mazur, Sébastien Campagne, Irene Beusch, Malgorzata M Duszczyk, Mark D Robinson, Vikram Govind Panse, Frédéric Hai-Trieu Allain
RNA recognition by Npl3p reveals U2 snRNA-binding compatible with a chaperone role during splicing. Nature communications 14 (1) (2023)
Stephan Schmeing, Mark D Robinson
Gapless provides combined scaffolding, gap filling, and assembly correction with long reads. Life science alliance 6 (7) (2023)
Helena Lucia Crowell, Sarah X Morillo Leonardo, Charlotte Soneson, Mark D Robinson
The shaky foundations of simulating single-cell RNA sequencing data. Genome biology 24 (1) (2023)
Stephan Schmeing, Mark D Robinson
Gapless provides combined scaffolding, gap filling, and assembly correction with long reads. Life science alliance 6 (7) (2023)
Karin D Prummel, Helena Lucia Crowell, Susan Nieuwenhuize, Eline C Brombacher, Stephan Daetwyler, Charlotte Soneson, Jelena Kresoja-Rakic, Agnese Kocere, Manuel Ronner, Alexander Ernst, Zahra Labbaf, David E Clouthier, Anthony B Firulli, Hector Sanchez-Iranzo, Sundar Ram Naganathan, Rebecca O'Rourke, Erez Raz, Nadia Mercader, Alexa Burger, Emanuela Felley-Bosco, Jan Huisken, Mark D Robinson, Christian Mosimann
Hand2 delineates mesothelium progenitors and is reactivated in mesothelioma. Nature communications 13 (1) (2022)
Mark P Rubinstein, Cameron Williams, Caroline Mart, Jonathan Beall, Linda MacPherson, Joseph Azar, Marzena Swiderska-Syn, Francesco Pantano, Barry C Gibney, Mark D Robinson, Carsten Krieg, Elizabeth G Hill, Sharif A Taha, Amy D Rock, John H Lee, Patrick Soon-Shiong, John Wrangle
Phase I Trial Characterizing the Pharmacokinetic Profile of N-803, a Chimeric IL-15 Superagonist, in Healthy Volunteers. Journal of immunology (Baltimore, Md. : 1950) 208 (6) (2022)
Johanna Wagner, Markus Masek, Andrea Jacobs, Charlotte Soneson, Sujana Sivapatham, Nicolas Damond, Natalie de Souza, Mark D Robinson, Bernd Bodenmiller
Mass cytometric and transcriptomic profiling of epithelial-mesenchymal transitions in human mammary cell lines. Scientific data 9 (1) (2022)
Ruizhu Huang, Charlotte Soneson, Pierre-Luc Germain, Thomas S B Schmidt, Christian Von Mering, Mark D Robinson
treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses. Genome biology 22 (1) (2021)
Pierre-Luc Germain, Aaron Lun, Will Macnair, Mark D Robinson
Doublet identification in single-cell sequencing data using scDblFinder. F1000Research 10 (2021)
Pierre-Luc Germain, Aaron Lun, Carlos Garcia Meixide, Will Macnair, Mark D Robinson
Doublet identification in single-cell sequencing data using scDblFinder . F1000Research 10 (2021)
Stefan Milosavljevic, Tony Kuo, Samuele Decarli, Lucas Mohn, Jun Sese, Kentaro K Shimizu, Rie Shimizu-Inatsugi, Mark D Robinson
ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw. BMC genomics 22 (1) (2021)
Reto Gerber, Mark D Robinson
pubassistant.ch: consolidating publication profiles of researchers. F1000Research 10 (2021)
Reto Gerber, Mark D Robinson
pubassistant.ch: consolidating publication profiles of researchers. F1000Research 10 (2021)
Reto Gerber, Mark D Robinson
pubassistant.ch: consolidating publication profiles of researchers. F1000Research 10 (2021)
Almut Lütge, Joanna Zyprych-Walczak, Urszula Brykczynska Kunzmann, Helena L Crowell, Daniela Calini, Dheeraj Malhotra, Charlotte Soneson, Mark D Robinson
CellMixS: quantifying and visualizing batch effects in single-cell RNA-seq data. Life science alliance 4 (6) (2021)
Stephany Orjuela, Hannah R Parker, Sija Sajibu, Fabrizio Cereatti, Matthias Sauter, Federico Buffoli, Mark D Robinson, Giancarlo Marra
Disentangling tumorigenesis-associated DNA methylation changes in colorectal tissues from those associated with ageing. Epigenetics (2021)
Reto Gerber, Mark D Robinson
Censcyt: censored covariates in differential abundance analysis in cytometry. BMC bioinformatics 22 (1) (2021)
David Lähnemann, Johannes Köster, Ewa Szczurek, Davis J McCarthy, Stephanie C Hicks, Mark D Robinson, Catalina A Vallejos, Kieran R Campbell, Niko Beerenwinkel, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M Keizer, Indu Khatri, Szymon M Kielbasa, Jan O Korbel, Alexey M Kozlov, Tzu-Hao Kuo, Boudewijn P F Lelieveldt, Ion I Mandoiu, John C Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J Theis, Huan Yang, Alex Zelikovsky, Alice C McHardy, Benjamin J Raphael, Sohrab P Shah, Alexander Schönhuth
Eleven grand challenges in single-cell data science. Genome biology 21 (1) (2020)
Ruizhu Huang, Charlotte Soneson, Felix G M Ernst, Kevin C Rue-Albrecht, Guangchuang Yu, Stephanie C Hicks, Mark D Robinson
TreeSummarizedExperiment: a S4 class for data with hierarchical structure. F1000Research 9 (2020)
Helena Lucia Crowell, Stéphane Chevrier, Andrea Jacobs, Sujana Sivapatham, null null, Bernd Bodenmiller, Mark D Robinson
An R-based reproducible and user-friendly preprocessing pipeline for CyTOF data. F1000Research 9 (2020)
Helena Lucia Crowell, Stéphane Chevrier, Andrea Jacobs, Sujana Sivapatham, null null, Bernd Bodenmiller, Mark D Robinson
An R-based reproducible and user-friendly preprocessing pipeline for CyTOF data. F1000Research 9 (2020)
Stephany Orjuela, Dania Machlab, Mirco Menigatti, Giancarlo Marra, Mark D Robinson
DAMEfinder: a method to detect differential allele-specific methylation. Epigenetics & chromatin 13 (1) (2020)
Helena Lucia Crowell, Charlotte Soneson, Pierre-Luc Germain, Daniela Calini, Ludovic Collin, Catarina Raposo, Dheeraj Malhotra, Mark D Robinson
muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data. Nature communications 11 (1) (2020)
Angela Meccariello, Marco Salvemini, Pasquale Primo, A Brantley Hall, Panagiota Koskinioti, Martina Dalíková, Andrea Gravina, Michela Anna Gucciardino, Federica Forlenza, Maria-Eleni Gregoriou, Domenica Ippolito, Simona Maria Monti, Valeria Petrella, Maryanna Martina Perrotta, Stephan Schmeing, Alessia Ruggiero, Francesca Scolari, Ennio Giordano, Konstantina T Tsoumani, František Marec, Nikolai Windbichler, Kallare P Arunkumar, Kostas Bourtzis, Kostas D Mathiopoulos, Jiannis Ragoussis, Luigi Vitagliano, Zhijian Jake Tu, Philippos Aris Papathanos, Mark D Robinson, Giuseppe Saccone
Maleness-on-the-Y (MoY) orchestrates male sex determination in major agricultural fruit fly pests. Science (New York, N.Y.) 365 (6460) (2019)
Julia Kaiser, Martina Maibach, Iris Salpeter, Niels Hagenbuch, Vladimir B C de Souza, Mark D Robinson, Martin E Schwab
The Spinal Transcriptome after Cortical Stroke: In Search of Molecular Factors Regulating Spontaneous Recovery in the Spinal Cord. The Journal of neuroscience : the official journal of the Society for Neuroscience 39 (24) (2019)
Hung-Wei Cheng, Lucas Onder, Mario Novkovic, Charlotte Soneson, Mechthild Lütge, Natalia Pikor, Elke Scandella, Mark D Robinson, Jun-Ichi Miyazaki, Anne Tersteegen, Ursula Sorg, Klaus Pfeffer, Thomas Rülicke, Thomas Hehlgans, Burkhard Ludewig
Origin and differentiation trajectories of fibroblastic reticular cells in the splenic white pulp. Nature communications 10 (1) (2019)
Charlotte Soneson, Yao Yao, Anna Bratus-Neuenschwander, Andrea Patrignani, Mark D Robinson, Shobbir Hussain
A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes. Nature communications 10 (1) (2019)
Stephany Orjuela, Ruizhu Huang, Katharina M Hembach, Mark D Robinson, Charlotte Soneson
ARMOR: An Automated Reproducible MOdular Workflow for Preprocessing and Differential Analysis of RNA-seq Data. G3 (Bethesda, Md.) 9 (7) (2019)
Simon G Krattinger, Joohyun Kang, Stephanie Bräunlich, Rainer Boni, Harsh Chauhan, Liselotte L Selter, Mark D Robinson, Marc W Schmid, Elena Wiederhold, Goetz Hensel, Jochen Kumlehn, Justine Sucher, Enrico Martinoia, Beat Keller
Abscisic acid is a substrate of the ABC transporter encoded by the durable wheat disease resistance gene Lr34. The New phytologist 223 (2) (2019)
Christian Perez-Shibayama, Cristina Gil-Cruz, Hung-Wei Cheng, Lucas Onder, Andrea Printz, Urs M Mörbe, Mario Novkovic, Conglei Li, Constantino Lopez-Macias, Matthew B Buechler, Shannon J Turley, Matthias Mack, Charlotte Soneson, Mark D Robinson, Elke Scandella, Jennifer L Gommerman, Burkhard Ludewig
Fibroblastic reticular cells initiate immune responses in visceral adipose tissues and secure peritoneal immunity. Science immunology 3 (26) (2019)
Bithi Chatterjee, Yun Deng, Angelika Holler, Nicolás Gonzalo Nuñez, Tarik Azzi, Liliana Danusia Vanoaica, Anne Müller, Hana Zdimerova, Olga Antsiferova, Andrea Zbinden, Riccarda Capaul, Johannes H Dreyer, David Nadal, Burkhard Becher, Mark D Robinson, Hans Stauss, Christian Münz
CD8+ T cells retain protective functions despite sustained inhibitory receptor expression during Epstein-Barr virus infection in vivo. PLoS pathogens 15 (5) (2019)
Lukas M Weber, Malgorzata Nowicka, Charlotte Soneson, Mark D Robinson
diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering. Communications biology 2 (2019)
Charlotte Soneson, Michael I Love, Rob Patro, Shobbir Hussain, Dheeraj Malhotra, Mark D Robinson
A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs. Life science alliance 2 (1) (2019)
Lukas M Weber, Wouter Saelens, Robrecht Cannoodt, Charlotte Soneson, Alexander Hapfelmeier, Paul P Gardner, Anne-Laure Boulesteix, Yvan Saeys, Mark D Robinson
Essential guidelines for computational method benchmarking. Genome biology 20 (1) (2019)
Charlotte Soneson, Mark D Robinson
Bias, robustness and scalability in single-cell differential expression analysis. Nature methods 15 (4) (2018)
Carsten Krieg, Malgorzata Nowicka, Silvia Guglietta, Sabrina Schindler, Felix J Hartmann, Lukas M Weber, Reinhard Dummer, Mark D Robinson, Mitchell Paul Levesque, Burkhard Becher
High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy. Nature medicine 24 (2) (2018)
Angelo Duò, Mark D Robinson, Charlotte Soneson
A systematic performance evaluation of clustering methods for single-cell RNA-seq data. F1000Research (2018)
Hannah R Parker, Stephany Orjuela, Andreia Martinho Oliveira, Fabrizio Cereatti, Matthias Sauter, Henriette Heinrich, Giulia Tanzi, Achim Weber, Paul Komminoth, Stephan Vavricka, Luca Albanese, Federico Buffoli, Mark D Robinson, Giancarlo Marra
The proto CpG island methylator phenotype of sessile serrated adenomas/polyps. Epigenetics 13 (10-11) (2018)
Lukas Villiger, Hiu Man Grisch-Chan, Helen Lindsay, Femke Ringnalda, Chiara B Pogliano, Gabriella Allegri, Ralph Fingerhut, Johannes Häberle, Joao Matos, Mark D Robinson, Beat Thöny, Gerald Schwank
Treatment of a metabolic liver disease by in vivo genome base editing in adult mice. Nature medicine 24 (10) (2018)
Angelo Duò, Mark D Robinson, Charlotte Soneson
A systematic performance evaluation of clustering methods for single-cell RNA-seq data. F1000Research (2018)
Nikolaos Doumpas, Franziska Lampart, Mark D Robinson, Antonio Lentini, Colm E Nestor, Claudio Cantú, Konrad Basler
TCF/LEF dependent and independent transcriptional regulation of Wnt/β-catenin target genes. The EMBO journal 38 (2) (2018)
Helen Lindsay, Alexa Burger, Berthin Biyong, Anastasia Felker, Christopher Hess, Jonas Zaugg, Elena Chiavacci, Carolin Anders, Martin Jinek, Christian Mosimann, Mark D Robinson
CrispRVariants charts the mutation spectrum of genome engineering experiments. Nature biotechnology 34 (7) (2018)
Akash Sharma, Svenia D Heinze, Yanli Wu, Tea Kohlbrenner, Ian Morilla, Claudia Brunner, Ernst A Wimmer, Louis van de Zande, Mark D Robinson, Leo W Beukeboom, Daniel Bopp
Male sex in houseflies is determined by Mdmd, a paralog of the generic splice factor gene CWC22. Science (New York, N.Y.) 356 (6338) (2018)
Angelo Duò, Mark D Robinson, Charlotte Soneson
A systematic performance evaluation of clustering methods for single-cell RNA-seq data. F1000Research 7 (2018)
Malgorzata Nowicka, Carsten Krieg, Lukas M Weber, Felix J Hartmann, Silvia Guglietta, Burkhard Becher, Mitchell P Levesque, Mark D Robinson
CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets. F1000Research (2017)
Angela Meccariello, Simona Maria Monti, Alessandra Romanelli, Rita Colonna, Pasquale Primo, Maria Grazia Inghilterra, Giuseppe Del Corsano, Antonio Ramaglia, Giovanni Iazzetti, Antonia Chiarore, Francesco Patti, Svenia D Heinze, Marco Salvemini, Helen Lindsay, Elena Chiavacci, Alexa Burger, Mark D Robinson, Christian Mosimann, Daniel Bopp, Giuseppe Saccone
Highly efficient DNA-free gene disruption in the agricultural pest Ceratitis capitata by CRISPR-Cas9 ribonucleoprotein complexes. Scientific reports 7 (1) (2017)
Malgorzata Nowicka, Carsten Krieg, Lukas M Weber, Felix J Hartmann, Silvia Guglietta, Burkhard Becher, Mitchell P Levesque, Mark D Robinson
CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets. F1000Research 6 (2017)
Julia Sauerwald, Charlotte Soneson, Mark D Robinson, Stefan Luschnig
Faithful mRNA splicing depends on the Prp19 complex subunit faint sausage and is required for tracheal branching morphogenesis in Drosophila. Development (Cambridge, England) 144 (4) (2017)
Malgorzata Nowicka, Carsten Krieg, Lukas M Weber, Felix J Hartmann, Silvia Guglietta, Burkhard Becher, Mitchell P Levesque, Mark D Robinson
CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets. F1000Research (2017)
Felix J Hartmann, Raphael Bernard-Valnet, Clémence Quériault, Dunja Mrjden, Lukas M Weber, Edoardo Galli, Carsten Krieg, Mark D Robinson, Xuan-Hung Nguyen, Yves Dauvilliers, Roland S Liblau, Burkhard Becher
High-dimensional single-cell analysis reveals the immune signature of narcolepsy. The Journal of experimental medicine 213 (12) (2016)
Charlotte Soneson, Mark D Robinson
iCOBRA: open, reproducible, standardized and live method benchmarking. Nature methods 13 (4) (2016)
Alexa Burger, Helen Lindsay, Anastasia Felker, Christopher Hess, Carolin Anders, Elena Chiavacci, Jonas Zaugg, Lukas M Weber, Raul Catena, Martin Jinek, Mark D Robinson, Christian Mosimann
Maximizing mutagenesis with solubilized CRISPR-Cas9 ribonucleoprotein complexes. Development (Cambridge, England) 143 (11) (2016)
Lei Gu, Sandra C Frommel, Christopher C Oakes, Ronald Simon, Katharina Grupp, Cristina Y Gerig, Dominik Bär, Mark D Robinson, Constance Baer, Melanie Weiss, Zuguang Gu, Matthieu Schapira, Ruprecht Kuner, Holger Sültmann, Maurizio Provenzano, null null, Marie-Laure Yaspo, Benedikt Brors, Jan O Korbel, Thorsten Schlomm, Guido Sauter, Roland Eils, Christoph Plass, Raffaella Santoro
BAZ2A (TIP5) is involved in epigenetic alterations in prostate cancer and its overexpression predicts disease recurrence. Nature genetics 47 (1) (2014)

Mark D Robinson.css-eqlu8i{font-size:small;padding-left:4px;} (Mark Robinson)

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Mark D Robinson (Mark Robinson)