Eduardo Eyras (E Eyras, Kathi Zarnack)

Scopus Author ID ResearcherID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 24

Top Venues

Nature communications

Genome biology

Nucleic acids research

NAR cancer

Australian National University

Rijksuniversiteit Groningen (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Australian National University Mar 18 2019

Australia

Professor - EMBL Group Leader :: John Curtin School of Medical Research

Pompeu Fabra University Jan 01 2005 - Jan 01 2019

Spain

ICREA Research Professor

Centre for Genomic Regulation Jan 01 2004 - Jan 01 2005

Spain

Postdoc :: Genome Bioinformatics

University of Cambridge

United Kingdom

Marie Curie Fellow :: Applied Mathematics and Theoretical Physics

University of Groningen Jan 09 1995 - Jan 09 1999

Netherlands

PhD student :: Institute for Theoretical Physics

Education History

Rijksuniversiteit Groningen Sep 01 1995 - Jun 11 1999

Netherlands

PHD :: Theoretical Physics

Publications

P Acera Mateos, A J Sethi, A Ravindran, Akanksha Srivastava, K Woodward, S Mahmud, M Kanchi, M Guarnacci, J Xu, Zaka Wing-Sze Yuen, You Zhou, Alexandra Sneddon, W Hamilton, J Gao, L M Starrs, Rippei Hayashi, Vihandha O Wickramasinghe, Kathi Zarnack, Thomas Preiss, Gaetan Burgio, N Dehorter, Nikolay E Shirokikh, Eduardo Eyras
Prediction of m6A and m5C at single-molecule resolution reveals a transcriptome-wide co-occurrence of RNA modifications. Nature communications 15 (1) (2024)
Aditya J Sethi, Pablo Acera Mateos, Rippei Hayashi, Nikolay E Shirokikh, Eduardo Eyras
R2Dtool: integration and visualization of isoform-resolved RNA features. Bioinformatics (Oxford, England) 40 (8) (2024)
P Acera Mateos, A J Sethi, A Ravindran, Akanksha Srivastava, K Woodward, S Mahmud, M Kanchi, M Guarnacci, J Xu, Zaka Wing-Sze Yuen, You Zhou, Alexandra Sneddon, W Hamilton, J Gao, L M Starrs, Rippei Hayashi, Vihandha O Wickramasinghe, Kathi Zarnack, Thomas Preiss, Gaetan Burgio, N Dehorter, Nikolay E Shirokikh, Eduardo Eyras
Prediction of m6A and m5C at single-molecule resolution reveals a transcriptome-wide co-occurrence of RNA modifications. Nature communications 15 (1) (2024)
Aditya J Sethi, Pablo Acera Mateos, Rippei Hayashi, Nikolay E Shirokikh, Eduardo Eyras
R2Dtool: integration and visualization of isoform-resolved RNA features. Bioinformatics (Oxford, England) 40 (8) (2024)
Alexandra Sneddon, Agin Ravindran, Somasundhari Shanmuganandam, Madhu Kanchi, Nadine Hein, Simon Jiang, Nikolay E Shirokikh, Eduardo Eyras
Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing with RISER. Nature communications 15 (1) (2024)
Alexandra Sneddon, Agin Ravindran, Somasundhari Shanmuganandam, Madhu Kanchi, Nadine Hein, Simon Jiang, Nikolay E Shirokikh, Eduardo Eyras
Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing with RISER. Nature communications 15 (1) (2024)
Attila Horvath, Yoshika Janapala, Katrina Woodward, Shafi Mahmud, Alice Cleynen, Elizabeth E Gardiner, Ross D Hannan, Eduardo Eyras, Thomas Preiss, Nikolay E Shirokikh
Comprehensive translational profiling and STE AI uncover rapid control of protein biosynthesis during cell stress. Nucleic acids research 52 (13) (2024)
P Acera Mateos, A J Sethi, A Ravindran, Akanksha Srivastava, K Woodward, S Mahmud, M Kanchi, M Guarnacci, J Xu, Zaka Wing-Sze Yuen, You Zhou, Alexandra Sneddon, W Hamilton, J Gao, L M Starrs, Rippei Hayashi, Vihandha O Wickramasinghe, Kathi Zarnack, Thomas Preiss, Gaetan Burgio, N Dehorter, Nikolay E Shirokikh, Eduardo Eyras
Prediction of m6A and m5C at single-molecule resolution reveals a transcriptome-wide co-occurrence of RNA modifications. Nature communications 15 (1) (2024)
Attila Horvath, Yoshika Janapala, Katrina Woodward, Shafi Mahmud, Alice Cleynen, Elizabeth E Gardiner, Ross D Hannan, Eduardo Eyras, Thomas Preiss, Nikolay E Shirokikh
Comprehensive translational profiling and STE AI uncover rapid control of protein biosynthesis during cell stress. Nucleic acids research 52 (13) (2024)
Attila Horvath, Yoshika Janapala, Katrina Woodward, Shafi Mahmud, Alice Cleynen, Elizabeth E Gardiner, Ross D Hannan, Eduardo Eyras, Thomas Preiss, Nikolay E Shirokikh
Comprehensive translational profiling and STE AI uncover rapid control of protein biosynthesis during cell stress. Nucleic acids research (2024)
P Acera Mateos, A J Sethi, A Ravindran, Akanksha Srivastava, K Woodward, S Mahmud, M Kanchi, M Guarnacci, J Xu, Zaka Wing-Sze Yuen, You Zhou, Alexandra Sneddon, W Hamilton, J Gao, L M Starrs, Rippei Hayashi, Vihandha O Wickramasinghe, Kathi Zarnack, Thomas Preiss, Gaetan Burgio, N Dehorter, Nikolay E Shirokikh, Eduardo Eyras
Prediction of m6A and m5C at single-molecule resolution reveals a transcriptome-wide co-occurrence of RNA modifications. Nature communications 15 (1) (2024)
Eduardo Eyras, Eduardo Eyras
'Artificial intelligence and machine learning in RNA biology'. Briefings in bioinformatics 24 (6) (2023)
Marina Reixachs-Solé, Eduardo Eyras
Uncovering the impacts of alternative splicing on the proteome with current omics techniques. Wiley interdisciplinary reviews. RNA 13 (4) (2022)
Adria Closa, Marina Reixachs-Solé, Antonio C Fuentes-Fayos, Katharina E Hayer, Juan L Melero, Fabienne R S Adriaanse, Romy S Bos, Manuel Torres-Diz, Stephen P Hunger, Kathryn G Roberts, Charles G Mullighan, Ronald W Stam, Andrei Thomas-Tikhonenko, Justo P. Castaño, Raúl M Luque, Eduardo Eyras
A convergent malignant phenotype in B-cell acute lymphoblastic leukemia involving the splicing factor SRRM1. NAR cancer 4 (4) (2022)
Ivan de la Rubia, Akanksha Srivastava, Wenjing Xue, Joel A Indi, Silvia Carbonell-Sala, Julien Lagarde, M Mar Albà, Eduardo Eyras
RATTLE: reference-free reconstruction and quantification of transcriptomes from Nanopore sequencing. Genome biology 23 (1) (2022)
Adria Closa, Marina Reixachs-Solé, Antonio C Fuentes-Fayos, Katharina E Hayer, Juan L Melero, Fabienne R S Adriaanse, Romy S Bos, Manuel Torres-Diz, Stephen P Hunger, Kathryn G Roberts, Charles G Mullighan, Ronald W Stam, Andrei Thomas-Tikhonenko, Justo P. Castaño, Raúl M Luque, Eduardo Eyras
A convergent malignant phenotype in B-cell acute lymphoblastic leukemia involving the splicing factor SRRM1. NAR cancer 4 (4) (2022)
Zaka Wing-Sze Yuen, Akanksha Srivastava, Runa Daniel, Dennis McNevin, Cameron Jack, Eduardo Eyras
Systematic benchmarking of tools for CpG methylation detection from nanopore sequencing. Nature communications 12 (1) (2021)
Juan L Trincado, Marina Reixachs-Solé, Judith Pérez-Granado, Tim Fugmann, Ferran Sanz, Jun Yokota, Eduardo Eyras
ISOTOPE: ISOform-guided prediction of epiTOPEs in cancer. PLoS computational biology 17 (9) (2021)
Marina Reixachs-Solé, Jorge Ruiz-Orera, M Mar Albà, Eduardo Eyras
Ribosome profiling at isoform level reveals evolutionary conserved impacts of differential splicing on the proteome. Nature communications 11 (1) (2020)
Angel Ruiz-Reche, Akanksha Srivastava, Joel A Indi, Ivan de la Rubia, Eduardo Eyras
ReorientExpress: reference-free orientation of nanopore cDNA reads with deep learning. Genome biology 20 (1) (2019)
Juan L Trincado, Juan C Entizne, Gerald Hysenaj, Babita Singh, Miha Skalic, David J Elliott, Eduardo Eyras
SUPPA2: fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions. Genome biology 19 (1) (2018)
Metehan Cifdaloz, Lisa Osterloh, Osvaldo Graña, Erica Riveiro-Falkenbach, Pilar Ximénez-Embún, Javier Muñoz, Cristina Tejedo, Tonantzin G Calvo, Panagiotis Karras, David Olmeda, Belén Miñana, Gonzalo Gómez-López, Estela Cañon, Eduardo Eyras, Haihong Guo, Ferdinand Kappes, Pablo L Ortiz-Romero, Jose L Rodríguez-Peralto, Diego Megías, Juan Valcárcel, María S Soengas
Systems analysis identifies melanoma-enriched pro-oncogenic networks controlled by the RNA binding protein CELF1. Nature communications 8 (1) (2017)
Juan L Trincado, E Sebestyén, A Pagés, Eduardo Eyras
The prognostic potential of alternative transcript isoforms across human tumors. Genome medicine 8 (1) (2016)
Marina Falaleeva, Amadis Pages, Zaneta Matuszek, Sana Hidmi, Lily Agranat-Tamir, Konstantin Korotkov, Yuval Nevo, Eduardo Eyras, Ruth Sperling, Stefan Stamm
Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing. Proceedings of the National Academy of Sciences of the United States of America 113 (12) (2016)

Eduardo Eyras.css-eqlu8i{font-size:small;padding-left:4px;} (E Eyras, Kathi Zarnack)

Publication Activity (10 Years)

Top Topics

Top Venues

Eduardo Eyras (E Eyras, Kathi Zarnack)