Eran Halperin

Publication Activity (10 Years)

Years Active: 2017-2022
Publications (10 Years): 14

Top Topics

Body Mass Index

Insulin Resistance

Microbial Community

Top Venues

Nature communications

PLoS computational biology

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Leah Briscoe, Brunilda Balliu, Sriram Sankararaman, Eran Halperin, Nandita R Garud
Evaluating supervised and unsupervised background noise correction in human gut microbiome data. PLoS computational biology 18 (2) (2022)
Nadav Rakocz, Jeffrey N Chiang, Muneeswar G Nittala, Giulia Corradetti, Liran Tiosano, Swetha Velaga, Michael Thompson, Brian L Hill, Sriram Sankararaman, Jonathan L Haines, Margaret A Pericak-Vance, Dwight Stambolian, Srinivas R Sadda, Eran Halperin
Automated identification of clinical features from sparsely annotated 3-dimensional medical imaging. NPJ digital medicine 4 (1) (2021)
Cameron Martino, Liat Shenhav, Clarisse A Marotz, George Armstrong, Daniel McDonald, Yoshiki Vázquez-Baeza, James T Morton, Lingjing Jiang, Maria Gloria Dominguez Bello, Austin D Swafford, Eran Halperin, Rob Knight
Context-aware dimensionality reduction deconvolutes gut microbial community dynamics. Nature biotechnology 39 (2) (2020)
Zong Miao, Marcus Alvarez, Arthur Ko, Yash V Bhagat, Elior Rahmani, Brandon Jew, Sini Heinonen, Linda Liliana Muñoz-Hernandez, Miguel Herrera-Hernandez, Carlos Aguilar-Salinas, Teresa Tusie-Luna, Karen L Mohlke, Markku Laakso, Kirsi H Pietiläinen, Eran Halperin, Päivi Pajukanta
The causal effect of obesity on prediabetes and insulin resistance reveals the important role of adipose tissue in insulin resistance. PLoS genetics 16 (9) (2020)
Aman Agrawal, Alec M Chiu, Minh Le, Eran Halperin, Sriram Sankararaman
Scalable probabilistic PCA for large-scale genetic variation data. PLoS genetics 16 (5) (2020)
Igor Mandric, Tommer Schwarz, Arunabha Majumdar, Kangcheng Hou, Leah Briscoe, Richard Perez, Meena Subramaniam, Christoph Hafemeister, Rahul Satija, Chun Jimmie Ye, Bogdan Pasaniuc, Eran Halperin
Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis. Nature communications 11 (1) (2020)
Brandon Jew, Marcus Alvarez, Elior Rahmani, Zong Miao, Arthur Ko, Kristina M Garske, Jae Hoon Sul, Kirsi H Pietiläinen, Päivi Pajukanta, Eran Halperin
Publisher Correction: Accurate estimation of cell composition in bulk expression through robust integration of single-cell information. Nature communications 11 (1) (2020)
Tyler A Joseph, Liat Shenhav, Joao B Xavier, Eran Halperin, Itsik Pe'er
Compositional Lotka-Volterra describes microbial dynamics in the simplex. PLoS computational biology 16 (5) (2020)
Brandon Jew, Marcus Alvarez, Elior Rahmani, Zong Miao, Arthur Ko, Kristina M Garske, Jae Hoon Sul, Kirsi H Pietiläinen, Päivi Pajukanta, Eran Halperin
Accurate estimation of cell composition in bulk expression through robust integration of single-cell information. Nature communications 11 (1) (2020)
Liat Shenhav, Mike Thompson, Tyler A Joseph, Leah Briscoe, Ori Furman, David Bogumil, Itzhak Mizrahi, Itsik Pe'er, Eran Halperin
FEAST: fast expectation-maximization for microbial source tracking. Nature methods 16 (7) (2019)
Eyal Fisher, Rafael Y Brzezinski, Michal Ehrenwald, Itzhak Shapira, David Zeltser, Shlomo Berliner, Yonit Marcus, Gabi Shefer, Naftali Stern, Ori Rogowski, Eran Halperin, Saharon Rosset, Shani Shenhar-Tsarfaty
Increase of body mass index and waist circumference predicts development of metabolic syndrome criteria in apparently healthy individuals with 2 and 5 years follow-up. International journal of obesity (2005) 43 (4) (2019)
Elior Rahmani, Regev Schweiger, Brooke Rhead, Lindsey A Criswell, Lisa F Barcellos, Eleazar Eskin, Saharon Rosset, Sriram Sankararaman, Eran Halperin
Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology. Nature communications 10 (1) (2019)
Regev Schweiger, Eyal Fisher, Omer Weissbrod, Elior Rahmani, Martina Müller-Nuraysid, Sonja Kunze, Christian Gieger, Melanie Waldenberger, Saharon Rosset, Eran Halperin
Detecting heritable phenotypes without a model using fast permutation testing for heritability and set-tests. Nature communications 9 (1) (2018)
Regev Schweiger, Omer Weissbrod, Elior Rahmani, Martina Müller-Nurasyid, Sonja Kunze, Christian Gieger, Melanie Waldenberger, Saharon Rosset, Eran Halperin
RL-SKAT: An Exact and Efficient Score Test for Heritability and Set Tests. Genetics 207 (4) (2017)