Joao B Xavier (Joao Xavier, J B Xavier)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 36

Top Venues

Nature microbiology

Biology methods & protocols

Proceedings of the National Academy of Sciences of the United States of America

PLoS computational biology

Instituto de Tecnologia Química e Biológica (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Instituto de Tecnologia Química e Biológica Jan 01 1999 - Feb 06 2003

Portugal

PHD

Universidade Técnica de Lisboa Instituto Superior Técnico Sep 01 1992 - Jan 31 1998

Portugal

BSC :: Chemical Engineering

Publications

Joao B Xavier
Machine learning of cellular metabolic rewiring. Biology methods & protocols 9 (1) (2024)
Chen Liao, Thierry Rolling, Ana Djukovic, Teng Fei, Vishwas Mishra, Hongbin Liu, Chloe Lindberg, Lei Dai, Bing Zhai, Jonathan U Peled, Marcel R M van den Brink, Tobias M Hohl, Joao B Xavier
Oral bacteria relative abundance in faeces increases due to gut microbiota depletion and is linked with patient outcomes. Nature microbiology 9 (6) (2024)
Chen Liao, Thierry Rolling, Ana Djukovic, Teng Fei, Vishwas Mishra, Hongbin Liu, Chloe Lindberg, Lei Dai, Bing Zhai, Jonathan U Peled, Marcel R M van den Brink, Tobias M Hohl, Joao B Xavier
Oral bacteria relative abundance in faeces increases due to gut microbiota depletion and is linked with patient outcomes. Nature microbiology 9 (6) (2024)
Bing Zhai, Chen Liao, Siddharth Jaggavarapu, Yuanyuan Tang, Thierry Rolling, Yating Ning, Tianshu Sun, Sean A Bergin, Mergim Gjonbalaj, Edwin Miranda, N Esther Babady, Oliver Bader, Ying Taur, Geraldine Butler, Li Zhang, Joao B Xavier, David S Weiss, Tobias M Hohl
Antifungal heteroresistance causes prophylaxis failure and facilitates breakthrough Candida parapsilosis infections. Nature medicine (2024)
Chen Liao, Thierry Rolling, Ana Djukovic, Teng Fei, Vishwas Mishra, Hongbin Liu, Chloe Lindberg, Lei Dai, Bing Zhai, Jonathan U Peled, Marcel R M van den Brink, Tobias M Hohl, Joao B Xavier
Oral bacteria relative abundance in faeces increases due to gut microbiota depletion and is linked with patient outcomes. Nature microbiology (2024)
Joao B Xavier
Machine learning of cellular metabolic rewiring. Biology methods & protocols 9 (1) (2024)
Joao B Xavier
Machine learning of cellular metabolic rewiring. Biology methods & protocols 9 (1) (2024)
Chen Liao, Thierry Rolling, Ana Djukovic, Teng Fei, Vishwas Mishra, Hongbin Liu, Chloe Lindberg, Lei Dai, Bing Zhai, Jonathan U Peled, Marcel R M van den Brink, Tobias M Hohl, Joao B Xavier
Oral bacteria relative abundance in faeces increases due to gut microbiota depletion and is linked with patient outcomes. Nature microbiology (2024)
Sam Sheppard, Katja Srpan, Wendy Lin, Mariah E Lee, Rebecca B Delconte, Mark Owyong, Peter Carmeliet, Daniel M Davis, Joao B Xavier, Katharine C Hsu, Joseph C Sun
Fatty acid oxidation fuels natural killer cell responses against infection and cancer. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Bing Zhai, Chen Liao, Siddharth Jaggavarapu, Yuanyuan Tang, Thierry Rolling, Yating Ning, Tianshu Sun, Sean A Bergin, Mergim Gjonbalaj, Edwin Miranda, N Esther Babady, Oliver Bader, Ying Taur, Geraldine Butler, Li Zhang, Joao B Xavier, David S Weiss, Tobias M Hohl
Antifungal heteroresistance causes prophylaxis failure and facilitates breakthrough Candida parapsilosis infections. Nature medicine (2024)
Sam Sheppard, Katja Srpan, Wendy Lin, Mariah E Lee, Rebecca B Delconte, Mark Owyong, Peter Carmeliet, Daniel M Davis, Joao B Xavier, Katharine C Hsu, Joseph C Sun
Fatty acid oxidation fuels natural killer cell responses against infection and cancer. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Chen Liao, Thierry Rolling, Ana Djukovic, Teng Fei, Vishwas Mishra, Hongbin Liu, Chloe Lindberg, Lei Dai, Bing Zhai, Jonathan U Peled, Marcel R M van den Brink, Tobias M Hohl, Joao B Xavier
Oral bacteria relative abundance in faeces increases due to gut microbiota depletion and is linked with patient outcomes. Nature microbiology (2024)
Joao B Xavier
Machine learning of cellular metabolic rewiring. Biology methods & protocols 9 (1) (2024)
Sam Sheppard, Katja Srpan, Wendy Lin, Mariah E Lee, Rebecca B Delconte, Mark Owyong, Peter Carmeliet, Daniel M Davis, Joao B Xavier, Katharine C Hsu, Joseph C Sun
Fatty acid oxidation fuels natural killer cell responses against infection and cancer. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Joao B Xavier
Machine learning of cellular metabolic rewiring. Biology methods & protocols 9 (1) (2024)
Sam Sheppard, Katja Srpan, Wendy Lin, Mariah E Lee, Rebecca B Delconte, Mark Owyong, Peter Carmeliet, Daniel M Davis, Joao B Xavier, Katharine C Hsu, Joseph C Sun
Fatty acid oxidation fuels natural killer cell responses against infection and cancer. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Sam Sheppard, Katja Srpan, Wendy Lin, Mariah E Lee, Rebecca B Delconte, Mark Owyong, Peter Carmeliet, Daniel M Davis, Joao B Xavier, Katharine C Hsu, Joseph C Sun
Fatty acid oxidation fuels natural killer cell responses against infection and cancer. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Chen Liao, Thierry Rolling, Ana Djukovic, Teng Fei, Vishwas Mishra, Hongbin Liu, Chloe Lindberg, Lei Dai, Bing Zhai, Jonathan U Peled, Marcel R M van den Brink, Tobias M Hohl, Joao B Xavier
Oral bacteria relative abundance in faeces increases due to gut microbiota depletion and is linked with patient outcomes. Nature microbiology 9 (6) (2024)
Chen Liao, Thierry Rolling, Ana Djukovic, Teng Fei, Vishwas Mishra, Hongbin Liu, Chloe Lindberg, Lei Dai, Bing Zhai, Jonathan U Peled, Marcel R M van den Brink, Tobias M Hohl, Joao B Xavier
Oral bacteria relative abundance in faeces increases due to gut microbiota depletion and is linked with patient outcomes. Nature microbiology (2024)
Deepti Mathur, Chen Liao, Wendy Lin, Alessandro La Ferlita, Salvatore Alaimo, Samuel R Taylor, Yi Zhong, Christine A Iacobuzio-Donahue, Alfredo Ferro, Joao B Xavier
The ratio of key metabolic transcripts is a predictive biomarker of breast cancer metastasis to the lung. Cancer research (2023)
Joao B Xavier
Machine learning of cellular metabolic rewiring. bioRxiv : the preprint server for biology (2023)
Ana Djukovic, María José Garzón, Cécile Canlet, Vitor Cabral, Rym Lalaoui, Marc García-Garcerá, Julia Woortman, Marie Tremblay-Franco, Iván Peñaranda, Leonor Puchades-Carrasco, Antonio Pineda-Lucena, Eva María González-Barberá, Miguel Salavert, José Luis López-Hontangas, Miguel Angel Sanz, Jaime Sanz, Bernhard Kuster, Jean-Marc Rolain, Laurent Debrauwer, Karina B Xavier, Joao B Xavier, Carles Ubeda
Lactobacillus supports Clostridiales to restrict gut colonization by multidrug-resistant Enterobacteriaceae. Nature communications 13 (1) (2022)
Hongbin Liu, Chen Liao, Lu Wu, Jinhui Tang, Junyu Chen, Chaobi Lei, Linggang Zheng, Chenhong Zhang, Yang-Yu Liu, Joao B Xavier, Lei Dai
Ecological dynamics of the gut microbiome in response to dietary fiber. The ISME journal 16 (8) (2022)
Hilary Monaco, Kevin S Liu, Tiago Sereno, Maxime Deforet, Bradford P Taylor, Yanyan Chen, Caleb C Reagor, Joao B Xavier
Spatial-temporal dynamics of a microbial cooperative behavior resistant to cheating. Nature communications 13 (1) (2022)
Jinyuan Yan, Chen Liao, Bradford P Taylor, Emily Fontana, Luigi A Amoretti, Roberta J Wright, Eric R Littmann, Anqi Dai, Nicholas R Waters, Jonathan U Peled, Ying Taur, Miguel-Ángel Perales, Benjamin A Siranosian, Ami S Bhatt, Marcel R M van den Brink, Eric G Pamer, Jonas Schluter, Joao B Xavier
A compilation of fecal microbiome shotgun metagenomics from hematopoietic cell transplantation patients. Scientific data 9 (1) (2022)
Guillem Santamaria, Chen Liao, Chloe Lindberg, Yanyan Chen, Zhe Wang, Kyu Rhee, Francisco Rodrigues Pinto, Jinyuan Yan, Joao B Xavier
Evolution and regulation of microbial secondary metabolism. eLife 11 (2022)
Chen Liao, Bradford P Taylor, Camilla Ceccarani, Emily Fontana, Luigi A Amoretti, Roberta J Wright, Antonio L C Gomes, Jonathan U Peled, Ying Taur, Miguel-Angel Perales, Marcel R M van den Brink, Eric Littmann, Eric G Pamer, Jonas Schluter, Joao B Xavier
Author Correction: Compilation of longitudinal microbiota data and hospitalome from hematopoietic cell transplantation patients. Scientific data 8 (1) (2021)
Chen Liao, Bradford P Taylor, Camilla Ceccarani, Emily Fontana, Luigi A Amoretti, Roberta J Wright, Antonio L C Gomes, Jonathan U Peled, Ying Taur, Miguel-Angel Perales, Marcel R M van den Brink, Eric Littmann, Eric G Pamer, Jonas Schluter, Joao B Xavier
Compilation of longitudinal microbiota data and hospitalome from hematopoietic cell transplantation patients. Scientific data 8 (1) (2021)
Thierry Rolling, Bing Zhai, Mergim Gjonbalaj, Nicholas Tosini, Keiko Yasuma-Mitobe, Emily Fontana, Luigi A Amoretti, Roberta J Wright, Doris M Ponce, Miguel-Ángel Perales, Joao B Xavier, Marcel R M van den Brink, Kate A Markey, Jonathan U Peled, Ying Taur, Tobias M Hohl
Haematopoietic cell transplantation outcomes are linked to intestinal mycobiota dynamics and an expansion of Candida parapsilosis complex species. Nature microbiology 6 (12) (2021)
Christoph K Stein-Thoeringer, Katherine Nichols, A Lazrak, Melissa Docampo, A E Slingerland, J B Slingerland, A G Clurman, G Armijo, Antonio L C Gomes, Yusuke Shono, Anna Staffas, Marina Burgos da Silva, S M Devlin, Kate A Markey, D Bajic, R Pinedo, A Tsakmaklis, Eric R Littmann, Alessandro Pastore, Ying Taur, Sebastien Monette, M E Arcila, A J Pickard, M Maloy, Roberta J Wright, Luigi A Amoretti, E Fontana, Dung Pham, M A Jamal, D Weber, A D Sung, Daigo Hashimoto, C Scheid, Joao B Xavier, Julia A Messina, K Romero, M Lew, Amy T Bush, Lauren M Bohannon, K Hayasaka, Yuta Hasegawa, M J G T Vehreschild, J R Cross, D M Ponce, Miguel-Ángel Perales, Sergio A Giralt, Robert R Jenq, Takanori Teshima, E Holler, Nelson J Chao, Eric G Pamer, Jonathan U Peled, Marcel R M van den Brink
Lactose drives Enterococcus expansion to promote graft-versus-host disease. Science (New York, N.Y.) 366 (6469) (2020)
Chen Liao, Tong Wang, Sergei Maslov, Joao B Xavier
Modeling microbial cross-feeding at intermediate scale portrays community dynamics and species coexistence. PLoS computational biology 16 (8) (2020)
Chen Liao, Joao B Xavier, Zhenduo Zhu
Enhanced inference of ecological networks by parameterizing ensembles of population dynamics models constrained with prior knowledge. BMC ecology 20 (1) (2020)
Jonas Schluter, Jonathan U Peled, Bradford P Taylor, Kate A Markey, Melody Smith, Ying Taur, Rene Niehus, Anna Staffas, Anqi Dai, Emily Fontana, Luigi A Amoretti, Roberta J Wright, Sejal Morjaria, Maly Fenelus, Melissa S Pessin, Nelson J Chao, Meagan Lew, Lauren Bohannon, Amy Bush, Anthony D Sung, Tobias M Hohl, Miguel-Ángel Perales, Marcel R M van den Brink, Joao B Xavier
The gut microbiota is associated with immune cell dynamics in humans. Nature 588 (7837) (2020)
Tyler A Joseph, Liat Shenhav, Joao B Xavier, Eran Halperin, Itsik Pe'er
Compositional Lotka-Volterra describes microbial dynamics in the simplex. PLoS computational biology 16 (5) (2020)
Jinyuan Yan, Henri Estanbouli, Chen Liao, Wook Kim, Jonathan M Monk, Rayees Rahman, Mini Kamboj, Bernhard O Palsson, Wei-Gang Qiu, Joao B Xavier
Systems-level analysis of NalD mutation, a recurrent driver of rapid drug resistance in acute Pseudomonas aeruginosa infection. PLoS computational biology 15 (12) (2019)
Jinyuan Yan, Maxime Deforet, Kerry E Boyle, Rayees Rahman, Raymond Liang, Chinweike Okegbe, Lars E P Dietrich, Wei-Gang Qiu, Joao B Xavier
Bow-tie signaling in c-di-GMP: Machine learning in a simple biochemical network. PLoS computational biology 13 (8) (2017)

Joao B Xavier.css-eqlu8i{font-size:small;padding-left:4px;} (Joao Xavier, J B Xavier)

Publication Activity (10 Years)

Top Topics

Top Venues

Joao B Xavier (Joao Xavier, J B Xavier)