François Serra

ResearcherID ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 16

Top Venues

Nature communications

Nature medicine

NAR genomics and bioinformatics

Nature genetics

Barcelona Supercomputing Center

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Barcelona Supercomputing Center Jan 07 2019

Spain

senior researcher - comparative epigenomics :: Computational Biology Group

Publications

François Serra, Andrea Nieto-Aliseda, Lucía Fanlo-Escudero, Llorenç Rovirosa, Mónica Cabrera-Pasadas, Aleksey Lazarenkov, Blanca Urmeneta, Alvaro Alcalde-Merino, Emanuele M Nola, Andrei L Okorokov, Peter Fraser, Mariona Graupera, Sandra D Castillo, Jose L Sardina, Alfonso Valencia, Biola-Maria Javierre
p53 rapidly restructures 3D chromatin organization to trigger a transcriptional response. Nature communications 15 (1) (2024)
François Serra, Andrea Nieto-Aliseda, Lucía Fanlo-Escudero, Llorenç Rovirosa, Mónica Cabrera-Pasadas, Aleksey Lazarenkov, Blanca Urmeneta, Alvaro Alcalde-Merino, Emanuele M Nola, Andrei L Okorokov, Peter Fraser, Mariona Graupera, Sandra D Castillo, Jose L Sardina, Alfonso Valencia, Biola-Maria Javierre
p53 rapidly restructures 3D chromatin organization to trigger a transcriptional response. Nature communications 15 (1) (2024)
François Serra, Andrea Nieto-Aliseda, Lucía Fanlo-Escudero, Llorenç Rovirosa, Mónica Cabrera-Pasadas, Aleksey Lazarenkov, Blanca Urmeneta, Alvaro Alcalde-Merino, Emanuele M Nola, Andrei L Okorokov, Peter Fraser, Mariona Graupera, Sandra D Castillo, Jose L Sardina, Alfonso Valencia, Biola-Maria Javierre
p53 rapidly restructures 3D chromatin organization to trigger a transcriptional response. Nature communications 15 (1) (2024)
Laureano Tomás-Daza, Llorenç Rovirosa, Paula López-Martí, Andrea Nieto-Aliseda, François Serra, Ainoa Planas-Riverola, William C Earnshaw, Rebecca McDonald, Cedric Ghevaert, Esther Cuatrecasas, Dolors Costa, Mireia Camós, Clara Bueno, Pablo Menéndez, Alfonso Valencia, Biola-Maria Javierre
Low input capture Hi-C (liCHi-C) identifies promoter-enhancer interactions at high-resolution. Nature communications 14 (1) (2023)
Laureano Tomás-Daza, Llorenç Rovirosa, Paula López-Martí, Andrea Nieto-Aliseda, François Serra, Ainoa Planas-Riverola, William C Earnshaw, Rebecca McDonald, Cedric Ghevaert, Esther Cuatrecasas, Dolors Costa, Mireia Camós, Clara Bueno, Pablo Menéndez, Alfonso Valencia, Biola-Maria Javierre
Low input capture Hi-C (liCHi-C) identifies promoter-enhancer interactions at high-resolution. Nature communications 14 (1) (2023)
Laureano Tomás-Daza, Llorenç Rovirosa, Paula López-Martí, Andrea Nieto-Aliseda, François Serra, Ainoa Planas-Riverola, William C Earnshaw, Rebecca McDonald, Cedric Ghevaert, Esther Cuatrecasas, Dolors Costa, Mireia Camós, Clara Bueno, Pablo Menéndez, Alfonso Valencia, Biola-Maria Javierre
Low input capture Hi-C (liCHi-C) identifies promoter-enhancer interactions at high-resolution. Nature communications 14 (1) (2023)
Laureano Tomás-Daza, Llorenç Rovirosa, Paula López-Martí, Andrea Nieto-Aliseda, François Serra, Ainoa Planas-Riverola, William C Earnshaw, Rebecca McDonald, Cedric Ghevaert, Esther Cuatrecasas, Dolors Costa, Mireia Camós, Clara Bueno, Pablo Menéndez, Alfonso Valencia, Biola-Maria Javierre
Low input capture Hi-C (liCHi-C) identifies promoter-enhancer interactions at high-resolution. Nature communications 14 (1) (2023)
Laureano Tomás-Daza, Llorenç Rovirosa, Paula López-Martí, Andrea Nieto-Aliseda, François Serra, Ainoa Planas-Riverola, William C Earnshaw, Rebecca McDonald, Cedric Ghevaert, Esther Cuatrecasas, Dolors Costa, Mireia Camós, Clara Bueno, Pablo Menéndez, Alfonso Valencia, Biola-Maria Javierre
Low input capture Hi-C (liCHi-C) identifies promoter-enhancer interactions at high-resolution. Nature communications 14 (1) (2023)
Laureano Tomás-Daza, Llorenç Rovirosa, Paula López-Martí, Andrea Nieto-Aliseda, François Serra, Ainoa Planas-Riverola, William C Earnshaw, Rebecca McDonald, Cedric Ghevaert, Esther Cuatrecasas, Dolors Costa, Mireia Camós, Clara Bueno, Pablo Menéndez, Alfonso Valencia, Biola-Maria Javierre
Low input capture Hi-C (liCHi-C) identifies promoter-enhancer interactions at high-resolution. Nature communications 14 (1) (2023)
Alexandros Armaos, François Serra, Iker Núñez-Carpintero, Ji-Heui Seo, Sylvan C Baca, Stefano Gustincich, Alfonso Valencia, Matthew L Freedman, Davide Cirillo, Claudia Giambartolomei, Gian Gaetano Tartaglia
The PENGUIN approach to reconstruct protein interactions at enhancer-promoter regions and its application to prostate cancer. Nature communications 14 (1) (2023)
Silvia Galan, François Serra, Marc A Marti-Renom
Identification of chromatin loops from Hi-C interaction matrices by CTCF-CTCF topology classification. NAR genomics and bioinformatics 4 (1) (2022)
Laia Richart, Eleonora Lapi, Vera Pancaldi, Mirabai Cuenca-Ardura, Enrique Carrillo-de-Santa Pau, Miguel Madrid-Mencia, Hélène Neyret-Kahn, François Radvanyi, Juan Antonio Rodríguez, Yasmina Cuartero, François Serra, François Le Dily, Alfonso Valencia, Marc A Marti-Renom, Francisco X Real
STAG2 loss-of-function affects short-range genomic contacts and modulates the basal-luminal transcriptional program of bladder cancer cells. Nucleic acids research 49 (19) (2021)
Marco Di Stefano, Ralph Stadhouders, Irene Farabella, David Castillo, François Serra, Thomas Graf, Marc A Marti-Renom
Transcriptional activation during cell reprogramming correlates with the formation of 3D open chromatin hubs. Nature communications 11 (1) (2020)
Ralph Stadhouders, Enrique Vidal, François Serra, Bruno Di Stefano, François Le Dily, Javier Quilez, Antonio Gomez, Samuel Collombet, Clara Berenguer, Yasmina Cuartero, Jochen Hecht, Guillaume J Filion, Miguel Beato, Marc A Marti-Renom, Thomas Graf
Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming. Nature genetics 50 (2) (2018)
Renée Beekman, Vicente Chapaprieta, Núria Russiñol, Roser Vilarrasa-Blasi, Núria Verdaguer-Dot, Joost H A Martens, Martí Duran-Ferrer, Marta Kulis, François Serra, Biola M Javierre, Steven W Wingett, Guillem Clot, Ana C Queirós, Giancarlo Castellano, Julie Marie Blanc, Marta Gut, Angelika Merkel, Simon Charles Heath, Anna Vlasova, Sebastian Ullrich, Emilio Palumbo, Anna Enjuanes, David Martín-García, Sílvia Beà, Magda Pinyol, Marta Aymerich, Romina Royo, Montserrat Puiggros, David Torrents, Avik Datta, Ernesto Lowy-Gallego, Myrto Kostadima, Maša Roller, Laura Clarke, Paul Flicek, Xabier Agirre, Felipe Prosper, Tycho Baumann, Julio Delgado, Armando López-Guillermo, Peter Fraser, Marie-Laure Yaspo, Roderic Guigo, Reiner Siebert, Marc A Marti-Renom, Xose S Puente, Carlos López-Otín, Ivo Gut, Hendrik G Stunnenberg, Elias Campo, Jose I Martin-Subero
The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia. Nature medicine 24 (6) (2018)
François Serra, Davide Baù, Mike Goodstadt, David Castillo, Guillaume J Filion, Marc A Marti-Renom
Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors. PLoS computational biology 13 (7) (2017)

François Serra.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

François Serra