Peter Fraser

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 40

Top Topics

Gene Expression

Top Venues

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

Nature genetics

This page only lists publications with an associated author ORCID identifier.

Publications

François Serra, Andrea Nieto-Aliseda, Lucía Fanlo-Escudero, Llorenç Rovirosa, Mónica Cabrera-Pasadas, Aleksey Lazarenkov, Blanca Urmeneta, Alvaro Alcalde-Merino, Emanuele M Nola, Andrei L Okorokov, Peter Fraser, Mariona Graupera, Sandra D Castillo, Jose L Sardina, Alfonso Valencia, Biola-Maria Javierre
p53 rapidly restructures 3D chromatin organization to trigger a transcriptional response. Nature communications 15 (1) (2024)
François Serra, Andrea Nieto-Aliseda, Lucía Fanlo-Escudero, Llorenç Rovirosa, Mónica Cabrera-Pasadas, Aleksey Lazarenkov, Blanca Urmeneta, Alvaro Alcalde-Merino, Emanuele M Nola, Andrei L Okorokov, Peter Fraser, Mariona Graupera, Sandra D Castillo, Jose L Sardina, Alfonso Valencia, Biola-Maria Javierre
p53 rapidly restructures 3D chromatin organization to trigger a transcriptional response. Nature communications 15 (1) (2024)
Michael P Hogan, Matthew L Holding, Gunnar S Nystrom, Timothy J Colston, Daniel A Bartlett, Andrew J Mason, Schyler A Ellsworth, Rhett M Rautsaw, Kylie C Lawrence, Jason L Strickland, Bing He, Peter Fraser, Mark J Margres, David M Gilbert, H Lisle Gibbs, Christopher L Parkinson, Darin R Rokyta
The genetic regulatory architecture and epigenomic basis for age-related changes in rattlesnake venom. Proceedings of the National Academy of Sciences of the United States of America 121 (16) (2024)
Michael P Hogan, Matthew L Holding, Gunnar S Nystrom, Timothy J Colston, Daniel A Bartlett, Andrew J Mason, Schyler A Ellsworth, Rhett M Rautsaw, Kylie C Lawrence, Jason L Strickland, Bing He, Peter Fraser, Mark J Margres, David M Gilbert, H Lisle Gibbs, Christopher L Parkinson, Darin R Rokyta
The genetic regulatory architecture and epigenomic basis for age-related changes in rattlesnake venom. Proceedings of the National Academy of Sciences of the United States of America 121 (16) (2024)
Michael P Hogan, Matthew L Holding, Gunnar S Nystrom, Timothy J Colston, Daniel A Bartlett, Andrew J Mason, Schyler A Ellsworth, Rhett M Rautsaw, Kylie C Lawrence, Jason L Strickland, Bing He, Peter Fraser, Mark J Margres, David M Gilbert, H Lisle Gibbs, Christopher L Parkinson, Darin R Rokyta
The genetic regulatory architecture and epigenomic basis for age-related changes in rattlesnake venom. Proceedings of the National Academy of Sciences of the United States of America 121 (16) (2024)
François Serra, Andrea Nieto-Aliseda, Lucía Fanlo-Escudero, Llorenç Rovirosa, Mónica Cabrera-Pasadas, Aleksey Lazarenkov, Blanca Urmeneta, Alvaro Alcalde-Merino, Emanuele M Nola, Andrei L Okorokov, Peter Fraser, Mariona Graupera, Sandra D Castillo, Jose L Sardina, Alfonso Valencia, Biola-Maria Javierre
p53 rapidly restructures 3D chromatin organization to trigger a transcriptional response. Nature communications 15 (1) (2024)
Michael P Hogan, Matthew L Holding, Gunnar S Nystrom, Timothy J Colston, Daniel A Bartlett, Andrew J Mason, Schyler A Ellsworth, Rhett M Rautsaw, Kylie C Lawrence, Jason L Strickland, Bing He, Peter Fraser, Mark J Margres, David M Gilbert, H Lisle Gibbs, Christopher L Parkinson, Darin R Rokyta
The genetic regulatory architecture and epigenomic basis for age-related changes in rattlesnake venom. Proceedings of the National Academy of Sciences of the United States of America 121 (16) (2024)
Michael P Hogan, Matthew L Holding, Gunnar S Nystrom, Timothy J Colston, Daniel A Bartlett, Andrew J Mason, Schyler A Ellsworth, Rhett M Rautsaw, Kylie C Lawrence, Jason L Strickland, Bing He, Peter Fraser, Mark J Margres, David M Gilbert, H Lisle Gibbs, Christopher L Parkinson, Darin R Rokyta
The genetic regulatory architecture and epigenomic basis for age-related changes in rattlesnake venom. Proceedings of the National Academy of Sciences of the United States of America 121 (16) (2024)
Michael P Hogan, Matthew L Holding, Gunnar S Nystrom, Timothy J Colston, Daniel A Bartlett, Andrew J Mason, Schyler A Ellsworth, Rhett M Rautsaw, Kylie C Lawrence, Jason L Strickland, Bing He, Peter Fraser, Mark J Margres, David M Gilbert, H Lisle Gibbs, Christopher L Parkinson, Darin R Rokyta
The genetic regulatory architecture and epigenomic basis for age-related changes in rattlesnake venom. Proceedings of the National Academy of Sciences of the United States of America 121 (16) (2024)
Michael P Hogan, Matthew L Holding, Gunnar S Nystrom, Timothy J Colston, Daniel A Bartlett, Andrew J Mason, Schyler A Ellsworth, Rhett M Rautsaw, Kylie C Lawrence, Jason L Strickland, Bing He, Peter Fraser, Mark J Margres, David M Gilbert, H Lisle Gibbs, Christopher L Parkinson, Darin R Rokyta
The genetic regulatory architecture and epigenomic basis for age-related changes in rattlesnake venom. Proceedings of the National Academy of Sciences of the United States of America 121 (16) (2024)
Michael P Hogan, Matthew L Holding, Gunnar S Nystrom, Timothy J Colston, Daniel A Bartlett, Andrew J Mason, Schyler A Ellsworth, Rhett M Rautsaw, Kylie C Lawrence, Jason L Strickland, Bing He, Peter Fraser, Mark J Margres, David M Gilbert, H Lisle Gibbs, Christopher L Parkinson, Darin R Rokyta
The genetic regulatory architecture and epigenomic basis for age-related changes in rattlesnake venom. Proceedings of the National Academy of Sciences of the United States of America 121 (16) (2024)
Nimrod Rappoport, Elad Chomsky, Takashi Nagano, Charlie Seibert, Yaniv Lubling, Yael Baran, Aviezer Lifshitz, Wing Leung, Zohar Mukamel, Ron Shamir, Peter Fraser, Amos Tanay
Single cell Hi-C identifies plastic chromosome conformations underlying the gastrulation enhancer landscape. Nature communications 14 (1) (2023)
Miao Wang, Bing He, Yueling Hao, Divyaa Srinivasan, Jatin Shrinet, Peter Fraser
Cellular reprogramming is driven by widespread rewiring of promoter-enhancer interactions. BMC biology 21 (1) (2023)
Nimrod Rappoport, Elad Chomsky, Takashi Nagano, Charlie Seibert, Yaniv Lubling, Yael Baran, Aviezer Lifshitz, Wing Leung, Zohar Mukamel, Ron Shamir, Peter Fraser, Amos Tanay
Single cell Hi-C identifies plastic chromosome conformations underlying the gastrulation enhancer landscape. Nature communications 14 (1) (2023)
Nimrod Rappoport, Elad Chomsky, Takashi Nagano, Charlie Seibert, Yaniv Lubling, Yael Baran, Aviezer Lifshitz, Wing Leung, Zohar Mukamel, Ron Shamir, Peter Fraser, Amos Tanay
Single cell Hi-C identifies plastic chromosome conformations underlying the gastrulation enhancer landscape. Nature communications 14 (1) (2023)
Shanshan Zhang, Dylan Plummer, Leina Lu, Jian Cui, Wanying Xu, Miao Wang, Xiaoxiao Liu, Nachiketh Prabhakar, Ramesh Kumar, Divyaa Srinivasan, Peter Fraser, Yan Li, Jing Li, Fulai Jin
DeepLoop robustly maps chromatin interactions from sparse allele-resolved or single-cell Hi-C data at kilobase resolution. Nature genetics 54 (7) (2022)
Divyaa Srinivasan, Tarak Shisode, Ramesh Kumar, Peter Fraser
Chromosome organization through the cell cycle at a glance. Journal of cell science 135 (10) (2022)
Kosuke Tomimatsu, Dóra Bihary, Ioana Olan, Aled J Parry, Stefan Schoenfelder, Adelyne S L Chan, Guy St C Slater, Yoko Ito, Peter J Rugg-Gunn, Kristina Kirschner, Camino Bermejo-Rodriguez, Tomomi Seko, Hiroyuki Kugoh, Ken Shiraishi, Koji Sayama, Hitoshi Kurumizaka, Peter Fraser, Masako Narita, Shamith A Samarajiwa, Masashi Narita
Locus-specific induction of gene expression from heterochromatin loci during cellular senescence. Nature aging 2 (1) (2021)
Kosuke Tomimatsu, Dóra Bihary, Ioana Olan, Aled J Parry, Stefan Schoenfelder, Adelyne S L Chan, Guy St C Slater, Yoko Ito, Peter J Rugg-Gunn, Kristina Kirschner, Camino Bermejo-Rodriguez, Tomomi Seko, Hiroyuki Kugoh, Ken Shiraishi, Koji Sayama, Hitoshi Kurumizaka, Peter Fraser, Masako Narita, Shamith A Samarajiwa, Masashi Narita
Locus-specific induction of gene expression from heterochromatin loci during cellular senescence. Nature aging 2 (1) (2021)
Kosuke Tomimatsu, Dóra Bihary, Ioana Olan, Aled J Parry, Stefan Schoenfelder, Adelyne S L Chan, Guy St C Slater, Yoko Ito, Peter J Rugg-Gunn, Kristina Kirschner, Camino Bermejo-Rodriguez, Tomomi Seko, Hiroyuki Kugoh, Ken Shiraishi, Koji Sayama, Hitoshi Kurumizaka, Peter Fraser, Masako Narita, Shamith A Samarajiwa, Masashi Narita
Locus-specific induction of gene expression from heterochromatin loci during cellular senescence. Nature aging 2 (1) (2021)
Kosuke Tomimatsu, Dóra Bihary, Ioana Olan, Aled J Parry, Stefan Schoenfelder, Adelyne S L Chan, Guy St C Slater, Yoko Ito, Peter J Rugg-Gunn, Kristina Kirschner, Camino Bermejo-Rodriguez, Tomomi Seko, Hiroyuki Kugoh, Ken Shiraishi, Koji Sayama, Hitoshi Kurumizaka, Peter Fraser, Masako Narita, Shamith A Samarajiwa, Masashi Narita
Locus-specific induction of gene expression from heterochromatin loci during cellular senescence. Nature aging 2 (1) (2021)
Stephen Watt, Louella Vasquez, Klaudia Walter, Alice L Mann, Kousik Kundu, Lu Chen, Ying Sims, Simone Ecker, Frances Burden, Samantha Farrow, Ben Farr, Valentina Iotchkova, Heather Elding, Daniel Mead, Manuel Tardaguila, Hannes Ponstingl, David Richardson, Avik Datta, Paul Flicek, Laura Clarke, Kate Downes, Tomi Pastinen, Peter Fraser, Mattia Frontini, Biola-Maria Javierre, Mikhail Spivakov, Nicole Soranzo
Genetic perturbation of PU.1 binding and chromatin looping at neutrophil enhancers associates with autoimmune disease. Nature communications 12 (1) (2021)
Ian J Groves, Emma L A Drane, Marco Michalski, Jack Michael Monahan, Cinzia G Scarpini, Stephen P Smith, Giovanni Bussotti, Csilla Varnai, Stefan Schoenfelder, Peter Fraser, Anton J Enright, Nicholas Coleman
Short- and long-range cis interactions between integrated HPV genomes and cellular chromatin dysregulate host gene expression in early cervical carcinogenesis. PLoS pathogens 17 (8) (2021)
Samuel Collombet, Noémie Ranisavljevic, Takashi Nagano, Csilla Varnai, Tarak Shisode, Wing Leung, Tristan Piolot, Rafael Galupa, Maud Borensztein, Nicolas Servant, Peter Fraser, Katia Ancelin, Edith Heard
Parental-to-embryo switch of chromosome organization in early embryogenesis. Nature 580 (7801) (2020)
Steven W Wingett, Simon Andrews, Peter Fraser, Jörg Morf
RNA proximity sequencing data and analysis pipeline from a human neuroblastoma nuclear transcriptome. Scientific data 7 (1) (2020)
Jesper Grud Skat Madsen, Maria Stahl Madsen, Alexander Rauch, Sofie Traynor, Elvira L Van Hauwaert, Anders K Haakonsson, Biola M Javierre, Mette Larsen, Peter Fraser, Susanne Mandrup
Highly interconnected enhancer communities control lineage-determining genes in human mesenchymal stem cells. Nature genetics 52 (11) (2020)
Ioana Olan, Aled J Parry, Stefan Schoenfelder, Masako Narita, Yoko Ito, Adelyne S L Chan, Guy St C Slater, Dóra Bihary, Masashige Bando, Katsuhiko Shirahige, Hitoshi Kurumizaka, Shamith A Samarajiwa, Peter Fraser, Masashi Narita
Transcription-dependent cohesin repositioning rewires chromatin loops in cellular senescence. Nature communications 11 (1) (2020)
Jing Yang, Amanda McGovern, Paul Martin, Kate Duffus, Xiangyu Ge, Peyman Zarrineh, Andrew P Morris, Antony D Adamson, Peter Fraser, Magnus Rattray, Stephen Eyre
Analysis of chromatin organization and gene expression in T cells identifies functional genes for rheumatoid arthritis. Nature communications 11 (1) (2020)
Emmanuel Debrand, Lyubomira Chakalova, Joanne Miles, Yan-Feng Dai, Beatriz Goyenechea, Sandra Dye, Cameron S Osborne, Alice Horton, Susanna Harju-Baker, Ryan C Pink, Daniel Caley, David R F Carter, Kenneth R Peterson, Peter Fraser
An intergenic non-coding RNA promoter required for histone modifications in the human β-globin chromatin domain. PloS one 14 (8) (2019)
Stefan Schoenfelder, Peter Fraser
Long-range enhancer-promoter contacts in gene expression control. Nature reviews. Genetics 20 (8) (2019)
Jörg Morf, Steven W Wingett, Irene Farabella, Jonathan Cairns, Mayra Furlan-Magaril, Luis F Jiménez-García, Xin Liu, Frank F Craig, Simon Walker, Anne Segonds-Pichon, Simon Andrews, Marc A Marti-Renom, Peter Fraser
RNA proximity sequencing reveals the spatial organization of the transcriptome in the nucleus. Nature biotechnology 37 (7) (2019)
Irene Miguel-Escalada, Silvia Bonàs-Guarch, Inês Cebola, Joan Ponsa-Cobas, Julen Mendieta-Esteban, Goutham Atla, Biola M Javierre, Delphine M Y Rolando, Irene Farabella, Claire C Morgan, Javier García-Hurtado, Anthony Beucher, Ignasi Moran, Lorenzo Pasquali, Mireia Ramos-Rodríguez, Emil Vincent R Appel, Allan Linneberg, Anette P Gjesing, Daniel R Witte, Oluf Pedersen, Niels Grarup, Philippe Ravassard, David Torrents, Josep Maria Mercader, Lorenzo Piemonti, Thierry Berney, Eelco J P de Koning, Julie Kerr-Conte, Francois Pattou, Iryna O Fedko, Leif C Groop, Inga Prokopenko, Torben Hansen, Marc A Marti-Renom, Peter Fraser, Jorge Ferrer
Human pancreatic islet three-dimensional chromatin architecture provides insights into the genetics of type 2 diabetes. Nature genetics 51 (7) (2019)
Mun-Kit Choy, Biola M Javierre, Simon G Williams, Stephanie L Baross, Yingjuan Liu, Steven W Wingett, Artur Akbarov, Chris Wallace, Paula Freire-Pritchett, Peter J Rugg-Gunn, Mikhail Spivakov, Peter Fraser, Bernard D Keavney
Author Correction: Promoter interactome of human embryonic stem cell-derived cardiomyocytes connects GWAS regions to cardiac gene networks. Nature communications 9 (1) (2018)
Renée Beekman, Vicente Chapaprieta, Núria Russiñol, Roser Vilarrasa-Blasi, Núria Verdaguer-Dot, Joost H A Martens, Martí Duran-Ferrer, Marta Kulis, François Serra, Biola M Javierre, Steven W Wingett, Guillem Clot, Ana C Queirós, Giancarlo Castellano, Julie Marie Blanc, Marta Gut, Angelika Merkel, Simon Charles Heath, Anna Vlasova, Sebastian Ullrich, Emilio Palumbo, Anna Enjuanes, David Martín-García, Sílvia Beà, Magda Pinyol, Marta Aymerich, Romina Royo, Montserrat Puiggros, David Torrents, Avik Datta, Ernesto Lowy-Gallego, Myrto Kostadima, Maša Roller, Laura Clarke, Paul Flicek, Xabier Agirre, Felipe Prosper, Tycho Baumann, Julio Delgado, Armando López-Guillermo, Peter Fraser, Marie-Laure Yaspo, Roderic Guigo, Reiner Siebert, Marc A Marti-Renom, Xose S Puente, Carlos López-Otín, Ivo Gut, Hendrik G Stunnenberg, Elias Campo, Jose I Martin-Subero
The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia. Nature medicine 24 (6) (2018)
Marc A Marti-Renom, Genevieve Almouzni, Wendy A Bickmore, Kerstin Bystricky, Giacomo Cavalli, Peter Fraser, Susan M Gasser, Luca Giorgetti, Edith Heard, Mario Nicodemi, Marcelo Nollmann, Modesto Orozco, Ana Pombo, Maria-Elena Torres-Padilla
Challenges and guidelines toward 4D nucleome data and model standards. Nature genetics 50 (10) (2018)
Mun-Kit Choy, Biola M Javierre, Simon G Williams, Stephanie L Baross, Yingjuan Liu, Steven W Wingett, Artur Akbarov, Chris Wallace, Paula Freire-Pritchett, Peter J Rugg-Gunn, Mikhail Spivakov, Peter Fraser, Bernard D Keavney
Promoter interactome of human embryonic stem cell-derived cardiomyocytes connects GWAS regions to cardiac gene networks. Nature communications 9 (1) (2018)
Romina Petersen, John J Lambourne, Biola M Javierre, Luigi Grassi, Roman Kreuzhuber, Dace Ruklisa, Isabel M Rosa, Ana R Tomé, Heather Elding, Johanna P van Geffen, Tao Jiang, Samantha Farrow, Jonathan Cairns, Abeer M Al-Subaie, Sofie Ashford, Antony Attwood, Joana Batista, Heleen Bouman, Frances Burden, Fizzah A Choudry, Laura Clarke, Paul Flicek, Stephen F Garner, Matthias Haimel, Carly Kempster, Vasileios Ladopoulos, An-Sofie Lenaerts, Paulina M Materek, Harriet McKinney, Stuart Meacham, Daniel Mead, Magdolna Nagy, Christopher J Penkett, Augusto Rendon, Denis Seyres, Benjamin Sun, Salih Tuna, Marie-Elise van der Weide, Steven W Wingett, Joost H Martens, Oliver Stegle, Sylvia Richardson, Ludovic Vallier, David J Roberts, Kathleen Freson, Lorenz Wernisch, Hendrik G Stunnenberg, John Danesh, Peter Fraser, Nicole Soranzo, Adam S Butterworth, Johan W Heemskerk, Ernest Turro, Mikhail Spivakov, Willem H Ouwehand, William J Astle, Kate Downes, Myrto Kostadima, Mattia Frontini
Platelet function is modified by common sequence variation in megakaryocyte super enhancers. Nature communications 8 (2017)
Adam J Rubin, Brook C Barajas, Mayra Furlan-Magaril, Vanessa Lopez-Pajares, Maxwell R Mumbach, Imani Howard, Daniel S Kim, Lisa D Boxer, Jonathan Cairns, Mikhail Spivakov, Steven W Wingett, Minyi Shi, Zhixin Zhao, William J Greenleaf, Anshul Kundaje, Michael Snyder, Howard Y Chang, Peter Fraser, Paul A Khavari
Lineage-specific dynamic and pre-established enhancer-promoter contacts cooperate in terminal differentiation. Nature genetics 49 (10) (2017)
Louise Harewood, Kamal Kishore, Matthew D Eldridge, Steven Wingett, Danita Pearson, Stefan Schoenfelder, V Peter Collins, Peter Fraser
Hi-C as a tool for precise detection and characterisation of chromosomal rearrangements and copy number variation in human tumours. Genome biology 18 (1) (2017)
Paul Martin, Amanda McGovern, Jonathan Massey, Stefan Schoenfelder, Kate Duffus, Annie Yarwood, Anne Barton, Jane Worthington, Peter Fraser, Stephen Eyre, Gisela Orozco
Identifying Causal Genes at the Multiple Sclerosis Associated Region 6q23 Using Capture Hi-C. PloS one 11 (11) (2016)