Marc A Marti-Renom (Marc A Martí-Renom)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2015-2023
Publications (10 Years): 34

Top Topics

Embryonic Stem Cells

Top Venues

Nature communications

Nature genetics

Nucleic acids research

NAR genomics and bioinformatics

This page only lists publications with an associated author ORCID identifier.

Publications

Silvia Kocanova, Flavien Raynal, Isabelle Goiffon, Betul Akgol Oksuz, Davide Baú, Alain Kamgoué, Sylvain Cantaloube, Ye Zhan, Bryan Lajoie, Marc A Marti-Renom, Job Dekker, Kerstin Bystricky
Enhancer-driven 3D chromatin domain folding modulates transcription in human mammary tumor cells. Life science alliance 7 (2) (2023)
Glòria Mas, Fabio Santoro, Enrique Blanco, Gianni Paolo Gamarra Figueroa, François Le Dily, Gianmaria Frigè, Enrique Vidal, Francesca Mugianesi, Cecilia Ballaré, Arantxa Gutierrez, Aleksandra Sparavier, Marc A Marti-Renom, Saverio Minucci, Luciano Di Croce
In vivo temporal resolution of acute promyelocytic leukemia progression reveals a role of Klf4 in suppressing early leukemic transformation. Genes & development 36 (7-8) (2022)
Núria Serna-Pujol, Mónica Salinas-Pena, Francesca Mugianesi, François Le Dily, Marc A Marti-Renom, Albert Jordan
Coordinated changes in gene expression, H1 variant distribution and genome 3D conformation in response to H1 depletion. Nucleic acids research 50 (7) (2022)
Silvia Galan, François Serra, Marc A Marti-Renom
Identification of chromatin loops from Hi-C interaction matrices by CTCF-CTCF topology classification. NAR genomics and bioinformatics 4 (1) (2022)
Marc A Marti-Renom
Benchmarking experiments with polymer modeling. Nature methods 18 (5) (2021)
Julen Mendieta-Esteban, Marco Di Stefano, David Castillo, Irene Farabella, Marc A Marti-Renom
3D reconstruction of genomic regions from sparse interaction data. NAR genomics and bioinformatics 3 (1) (2021)
Roser Vilarrasa-Blasi, Paula Soler-Vila, Núria Verdaguer-Dot, Núria Russiñol, Marco Di Stefano, Vicente Chapaprieta, Guillem Clot, Irene Farabella, Pol Cuscó, Marta Kulis, Xabier Agirre, Felipe Prosper, Renée Beekman, Sílvia Beà, Dolors Colomer, Hendrik G Stunnenberg, Ivo Glynne Gut, Elias Campo, Marc A Marti-Renom, José Ignacio Martin-Subero
Dynamics of genome architecture and chromatin function during human B cell differentiation and neoplastic transformation. Nature communications 12 (1) (2021)
Irene Farabella, Marco Di Stefano, Paula Soler-Vila, Maria Marti-Marimon, Marc A Marti-Renom
Three-dimensional genome organization via triplex-forming RNAs. Nature structural & molecular biology 28 (11) (2021)
Laia Richart, Eleonora Lapi, Vera Pancaldi, Mirabai Cuenca-Ardura, Enrique Carrillo-de-Santa Pau, Miguel Madrid-Mencia, Hélène Neyret-Kahn, François Radvanyi, Juan Antonio Rodríguez, Yasmina Cuartero, François Serra, François Le Dily, Alfonso Valencia, Marc A Marti-Renom, Francisco X Real
STAG2 loss-of-function affects short-range genomic contacts and modulates the basal-luminal transcriptional program of bladder cancer cells. Nucleic acids research 49 (19) (2021)
Covadonga Vara, Andreu Paytuví-Gallart, Yasmina Cuartero, Lucía Álvarez-González, Laia Marin Gual, Francisca Garcia, Beatriu Florit-Sabater, Laia Capilla, Rosa Ana Sanchéz-Guillén, Sarrate Zaida, Riccardo Aiese Cigliano, Walter Sanseverino, Jeremy B Searle, Jacint Ventura, Marc A Marti-Renom, François Le Dily, Aurora Ruiz-Herrera
The impact of chromosomal fusions on 3D genome folding and recombination in the germ line. Nature communications 12 (1) (2021)
Nan Zhang, Julen Mendieta-Esteban, Alessandro Magli, Karin C Lilja, Rita C R Perlingeiro, Marc A Marti-Renom, Aristotelis Tsirigos, Brian David Dynlacht
Muscle progenitor specification and myogenic differentiation are associated with changes in chromatin topology. Nature communications 11 (1) (2020)
Silvia Galan, Nick Machnik, Kai Kruse, Noelia Díaz, Marc A Marti-Renom, Juan M Vaquerizas
CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction. Nature genetics 52 (11) (2020)
Nikolaus Rajewsky, Geneviève Almouzni, Stanislaw A Gorski, Stein Aerts, Bjørt K Kragesteen, Michela G Bertero, Christoph Bock, Annelien L Bredenoord, Giacomo Cavalli, Susanna Chiocca, Hans Clevers, Bart De Strooper, Angelika Eggert, Jan Ellenberg, Xosé M Fernández, Marek Figlerowicz, Susan M Gasser, Norbert Hübner, Jørgen Kjems, Jürgen Arthur Knoblich, Grietje Krabbe, Peter Lichter, Sten Linnarsson, Jean-Christophe Marine, John C Marioni, Marc A Marti-Renom, Mihai M Netea, Dörthe Nickel, Marcelo Nollmann, Halina R Novak, Helen Parkinson, Stefano Piccolo, Inês Pinheiro, Ana Pombo, Christian Popp, Juan I Garaycoechea, Sergio Roman-Roman, Philip Rosenstiel, Joachim L Schultze, Oliver Stegle, Amos Tanay, Giuseppe Testa, Dimitris Thanos, Fabian Joachim Theis, Maria-Elena Torres-Padilla, Alfonso Valencia, Céline Vallot, Alexander van Oudernaarden, Marie Vidal, Thierry Voet, null null
LifeTime and improving European healthcare through cell-based interceptive medicine. Nature 587 (7834) (2020)
Irene Farabella, Marc A Marti-Renom
TADs without borders. Nature genetics 52 (8) (2020)
Marco Di Stefano, Ralph Stadhouders, Irene Farabella, David Castillo, François Serra, Thomas Graf, Marc A Marti-Renom
Transcriptional activation during cell reprogramming correlates with the formation of 3D open chromatin hubs. Nature communications 11 (1) (2020)
Huy Q Nguyen, Shyamtanu Chattoraj, David Castillo, Son C Nguyen, Guy Nir, Antonios Lioutas, Elliot A Hershberg, Nuno M C Martins, Paul L Reginato, Mohammed Hannan, Brian J Beliveau, George M Church, Evan R Daugharthy, Marc A Marti-Renom, Chao-Ting Wu
3D mapping and accelerated super-resolution imaging of the human genome using in situ sequencing. Nature methods 17 (8) (2020)
Grégoire Stik, Enrique Vidal, Mercedes Barrero, Sergi Cuartero, Maria Vila-Casadesús, Julen Mendieta-Esteban, Tian V Tian, Jinmi Choi, Clara Berenguer, Amaya Abad, Beatrice Borsari, François Le Dily, Patrick Cramer, Marc A Marti-Renom, Ralph Stadhouders, Thomas Graf
CTCF is dispensable for immune cell transdifferentiation but facilitates an acute inflammatory response. Nature genetics 52 (7) (2020)
Núria Serna-Pujol, Mónica Salinas-Pena, Francesca Mugianesi, Natalia Lopez-Anguita, Francesc Torrent-Llagostera, Andrea Izquierdo-Bouldstridge, Marc A Marti-Renom, Albert Jordan
TADs enriched in histone H1.2 strongly overlap with the B compartment, inaccessible chromatin, and AT-rich Giemsa bands. The FEBS journal 288 (6) (2020)
Yannick G Spill, David Castillo, Enrique Vidal, Marc A Marti-Renom
Binless normalization of Hi-C data provides significant interaction and difference detection independent of resolution. Nature communications 10 (1) (2019)
Jörg Morf, Steven W Wingett, Irene Farabella, Jonathan Cairns, Mayra Furlan-Magaril, Luis F Jiménez-García, Xin Liu, Frank F Craig, Simon Walker, Anne Segonds-Pichon, Simon Andrews, Marc A Marti-Renom, Peter Fraser
RNA proximity sequencing reveals the spatial organization of the transcriptome in the nucleus. Nature biotechnology 37 (7) (2019)
Irene Miguel-Escalada, Silvia Bonàs-Guarch, Inês Cebola, Joan Ponsa-Cobas, Julen Mendieta-Esteban, Goutham Atla, Biola M Javierre, Delphine M Y Rolando, Irene Farabella, Claire C Morgan, Javier García-Hurtado, Anthony Beucher, Ignasi Moran, Lorenzo Pasquali, Mireia Ramos-Rodríguez, Emil Vincent R Appel, Allan Linneberg, Anette P Gjesing, Daniel R Witte, Oluf Pedersen, Niels Grarup, Philippe Ravassard, David Torrents, Josep Maria Mercader, Lorenzo Piemonti, Thierry Berney, Eelco J P de Koning, Julie Kerr-Conte, Francois Pattou, Iryna O Fedko, Leif C Groop, Inga Prokopenko, Torben Hansen, Marc A Marti-Renom, Peter Fraser, Jorge Ferrer
Human pancreatic islet three-dimensional chromatin architecture provides insights into the genetics of type 2 diabetes. Nature genetics 51 (7) (2019)
Ralph Stadhouders, Enrique Vidal, François Serra, Bruno Di Stefano, François Le Dily, Javier Quilez, Antonio Gomez, Samuel Collombet, Clara Berenguer, Yasmina Cuartero, Jochen Hecht, Guillaume J Filion, Miguel Beato, Marc A Marti-Renom, Thomas Graf
Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming. Nature genetics 50 (2) (2018)
Aleksandar Kojic, Ana Cuadrado, Magali De Koninck, Daniel Giménez-Llorente, Miriam Rodríguez-Corsino, Gonzalo Gómez-López, François Le Dily, Marc A Marti-Renom, Ana Losada
Distinct roles of cohesin-SA1 and cohesin-SA2 in 3D chromosome organization. Nature structural & molecular biology 25 (6) (2018)
Laura Pascual-Reguant, Enrique Blanco, Silvia Galan, François Le Dily, Yasmina Cuartero, Gemma Serra-Bardenys, Valerio Di Carlo, Ane Iturbide, Joan Pau Cebrià-Costa, Lara Nonell, Antonio García de Herreros, Luciano Di Croce, Marc A Marti-Renom, Sandra Peiró
Lamin B1 mapping reveals the existence of dynamic and functional euchromatin lamin B1 domains. Nature communications 9 (1) (2018)
Renée Beekman, Vicente Chapaprieta, Núria Russiñol, Roser Vilarrasa-Blasi, Núria Verdaguer-Dot, Joost H A Martens, Martí Duran-Ferrer, Marta Kulis, François Serra, Biola M Javierre, Steven W Wingett, Guillem Clot, Ana C Queirós, Giancarlo Castellano, Julie Marie Blanc, Marta Gut, Angelika Merkel, Simon Charles Heath, Anna Vlasova, Sebastian Ullrich, Emilio Palumbo, Anna Enjuanes, David Martín-García, Sílvia Beà, Magda Pinyol, Marta Aymerich, Romina Royo, Montserrat Puiggros, David Torrents, Avik Datta, Ernesto Lowy-Gallego, Myrto Kostadima, Maša Roller, Laura Clarke, Paul Flicek, Xabier Agirre, Felipe Prosper, Tycho Baumann, Julio Delgado, Armando López-Guillermo, Peter Fraser, Marie-Laure Yaspo, Roderic Guigo, Reiner Siebert, Marc A Marti-Renom, Xose S Puente, Carlos López-Otín, Ivo Gut, Hendrik G Stunnenberg, Elias Campo, Jose I Martin-Subero
The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia. Nature medicine 24 (6) (2018)
Guy Nir, Irene Farabella, Cynthia Pérez Estrada, Carl G Ebeling, Brian J Beliveau, Hiroshi M Sasaki, S Dean Lee, Son C Nguyen, Ruth B McCole, Shyamtanu Chattoraj, Jelena Erceg, Jumana AlHaj Abed, Nuno M C Martins, Huy Q Nguyen, Mohammed A Hannan, Sheikh Russell, Neva C Durand, Suhas S P Rao, Jocelyn Y Kishi, Paula Soler-Vila, Michele Di Pierro, José Nelson Onuchic, Steven P Callahan, John M Schreiner, Jeff A Stuckey, Peng Yin, Erez Lieberman Aiden, Marc A Marti-Renom, Chao-Ting Wu
Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling. PLoS genetics 14 (12) (2018)
Gloria Mas Martin, Enrique Blanco, Cecilia Ballaré, Miriam Sansó, Yannick G Spill, Deqing Hu, Yuki Aoi, François Le Dily, Ali Shilatifard, Marc A Marti-Renom, Luciano Di Croce
Promoter bivalency favors an open chromatin architecture in embryonic stem cells. Nature genetics 50 (10) (2018)
Marc A Marti-Renom, Genevieve Almouzni, Wendy A Bickmore, Kerstin Bystricky, Giacomo Cavalli, Peter Fraser, Susan M Gasser, Luca Giorgetti, Edith Heard, Mario Nicodemi, Marcelo Nollmann, Modesto Orozco, Ana Pombo, Maria-Elena Torres-Padilla
Challenges and guidelines toward 4D nucleome data and model standards. Nature genetics 50 (10) (2018)
François Serra, Davide Baù, Mike Goodstadt, David Castillo, Guillaume J Filion, Marc A Marti-Renom
Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors. PLoS computational biology 13 (7) (2017)
Mike Goodstadt, Marc A Marti-Renom
Challenges for visualizing three-dimensional data in genomic browsers. FEBS letters 591 (17) (2017)
Diego I Cattoni, Andrés M Cardozo Gizzi, Mariya Georgieva, Marco Di Stefano, Alessandro Valeri, Delphine Chamousset, Christophe Houbron, Stephanie Déjardin, Jean-Bernard Fiche, Inma González, Jia-Ming Chang, Thomas Sexton, Marc A Marti-Renom, Frédéric Bantignies, Giacomo Cavalli, Marcelo Nollmann
Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions. Nature communications 8 (1) (2017)
Marie Trussart, Eva Yus, Sira Martinez, Davide Baù, Yuhei O Tahara, Thomas Pengo, Michael Widjaja, Simon Kretschmer, Jim Swoger, Steven Djordjevic, Lynne Turnbull, Cynthia B Whitchurch, Makoto Miyata, Marc A Marti-Renom, Maria Lluch-Senar, Luís Serrano
Defined chromosome structure in the genome-reduced bacterium Mycoplasma pneumoniae. Nature communications 8 (2017)
Marie Trussart, François Serra, Davide Baù, Ivan Junier, Luís Serrano, Marc A Marti-Renom
Assessing the limits of restraint-based 3D modeling of genomes and genomic domains. Nucleic acids research 43 (7) (2015)
Gireesh K Bogu, Pedro Vizán, Lawrence W Stanton, Miguel Beato, Luciano Di Croce, Marc A Marti-Renom
Chromatin and RNA Maps Reveal Regulatory Long Noncoding RNAs in Mouse. Molecular and cellular biology 36 (5) (2015)