Haopeng Yu

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 17

Top Venues

Nucleic acids research

Nature communications

Nature chemical biology

RNA biology

Northwest A and F University

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Northwest A and F University Sep 01 2016

China

Doc. :: College of Life Sciences and State Key Laboratory of Crop Stress Biology in Arid Areas

Publications

Yueying Zhang, Qianli Dong, Zhen Wang, Qinzhe Liu, Haopeng Yu, Wenqing Sun, Jitender Cheema, Qiancheng You, Ling Ding, Xiaofeng Cao, Chuan He, Yiliang Ding, Huakun Zhang
A fine-scale Arabidopsis chromatin landscape reveals chromatin conformation-associated transcriptional dynamics. Nature communications 15 (1) (2024)
Yueying Zhang, Qianli Dong, Zhen Wang, Qinzhe Liu, Haopeng Yu, Wenqing Sun, Jitender Cheema, Qiancheng You, Ling Ding, Xiaofeng Cao, Chuan He, Yiliang Ding, Huakun Zhang
A fine-scale Arabidopsis chromatin landscape reveals chromatin conformation-associated transcriptional dynamics. Nature communications 15 (1) (2024)
Bibo Yang, Dilek Guneri, Haopeng Yu, Elisé P Wright, Wenqian Chen, Zoë A E Waller, Yiliang Ding
Prediction of DNA i-motifs via machine learning. Nucleic acids research 52 (5) (2024)
Bibo Yang, Dilek Guneri, Haopeng Yu, Elisé P Wright, Wenqian Chen, Zoë A E Waller, Yiliang Ding
Prediction of DNA i-motifs via machine learning. Nucleic acids research 52 (5) (2024)
Yueying Zhang, Qianli Dong, Zhen Wang, Qinzhe Liu, Haopeng Yu, Wenqing Sun, Jitender Cheema, Qiancheng You, Ling Ding, Xiaofeng Cao, Chuan He, Yiliang Ding, Huakun Zhang
A fine-scale Arabidopsis chromatin landscape reveals chromatin conformation-associated transcriptional dynamics. Nature communications 15 (1) (2024)
Bibo Yang, Dilek Guneri, Haopeng Yu, Elisé P Wright, Wenqian Chen, Zoë A E Waller, Yiliang Ding
Prediction of DNA i-motifs via machine learning. Nucleic acids research (2024)
Haopeng Yu, Fan Li, Bibo Yang, Yiman Qi, Dilek Guneri, Wenqian Chen, Zoë A E Waller, Ke Li, Yiliang Ding
iM-Seeker: a webserver for DNA i-motifs prediction and scoring via automated machine learning. Nucleic acids research (2024)
Yueying Zhang, Qianli Dong, Zhen Wang, Qinzhe Liu, Haopeng Yu, Wenqing Sun, Jitender Cheema, Qiancheng You, Ling Ding, Xiaofeng Cao, Chuan He, Yiliang Ding, Huakun Zhang
A fine-scale Arabidopsis chromatin landscape reveals chromatin conformation-associated transcriptional dynamics. Nature communications 15 (1) (2024)
Haopeng Yu, Fan Li, Bibo Yang, Yiman Qi, Dilek Guneri, Wenqian Chen, Zoë A E Waller, Ke Li, Yiliang Ding
iM-Seeker: a webserver for DNA i-motifs prediction and scoring via automated machine learning. Nucleic acids research 52 (W1) (2024)
Haopeng Yu, Fan Li, Bibo Yang, Yiman Qi, Dilek Guneri, Wenqian Chen, Zoë A E Waller, Ke Li, Yiliang Ding
iM-Seeker: a webserver for DNA i-motifs prediction and scoring via automated machine learning. Nucleic acids research 52 (W1) (2024)
Bibo Yang, Dilek Guneri, Haopeng Yu, Elisé P Wright, Wenqian Chen, Zoë A E Waller, Yiliang Ding
Prediction of DNA i-motifs via machine learning. Nucleic acids research 52 (5) (2024)
Shaoyan Zheng, Jingfang Dong, Jingqin Lu, Jing Li, Dagang Jiang, Haopeng Yu, Simiao Ye, Wenli Bu, Zhenlan Liu, Hai Zhou, Yiliang Ding, Chuxiong Zhuang
A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice. The New phytologist 234 (5) (2022)
Haopeng Yu, Yiman Qi, Bibo Yang, Xiaofei Yang, Yiliang Ding
G4Atlas: a comprehensive transcriptome-wide G-quadruplex database. Nucleic acids research (2022)
Zhaowei Wu, Yifei Zhang, Haopeng Yu, Deng Pan, Yujue Wang, Yannan Wang, Fan Li, Chang Liu, Hao Nan, Weizhong Chen, Quanjiang Ji
Programmed genome editing by a miniature CRISPR-Cas12f nuclease. Nature chemical biology 17 (11) (2021)
Haopeng Yu, Yi Zhang, Qing Sun, Huijie Gao, Shiheng Tao
RSVdb: a comprehensive database of transcriptome RNA structure. Briefings in bioinformatics 22 (3) (2021)
Haopeng Yu, Zhaowei Wu, Xiangdan Chen, Quanjiang Ji, Shiheng Tao
CRISPR-CBEI: a Designing and Analyzing Tool Kit for Cytosine Base Editor-Mediated Gene Inactivation. mSystems 5 (5) (2020)
Haopeng Yu, Wenjing Meng, Yuanhui Mao, Yi Zhang, Qing Sun, Shiheng Tao
Deciphering the rules of mRNA structure differentiation in Saccharomyces cerevisiae in vivo and in vitro with deep neural networks. RNA biology 16 (8) (2019)

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Publication Activity (10 Years)

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Haopeng Yu