Hiroko X Kondo

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 19

Top Topics

Molecular Dynamics Simulations

Electron Transfer

Binding Protein

Top Venues

International journal of molecular sciences

Biophysical reviews

Scientific reports

This page only lists publications with an associated author ORCID identifier.

Publications

Hiroko X Kondo, Hiroyuki Iizuka, Gen Masumoto, Yuichi Kabaya, Yusuke Kanematsu, Yu Takano
Prediction of Protein Function from Tertiary Structure of the Active Site in Heme Proteins by Convolutional Neural Network. Biomolecules 13 (1) (2023)
Hiroko X Kondo, Hiroyuki Iizuka, Gen Masumoto, Yuichi Kabaya, Yusuke Kanematsu, Yu Takano
Prediction of Protein Function from Tertiary Structure of the Active Site in Heme Proteins by Convolutional Neural Network. Biomolecules 13 (1) (2023)
Yu Takano, Hiroko X Kondo, Haruki Nakamura
Quantum chemical studies on hydrogen bonds in helical secondary structures. Biophysical reviews 14 (6) (2023)
Yusuke Kanematsu, Hiroko X Kondo, Yu Takano
Computational Exploration of Minimum Energy Reaction Pathway of N 2 O Formation from Intermediate I of P450nor Using an Active Center Model. International journal of molecular sciences 24 (24) (2023)
Hiroko X Kondo, Hiroyuki Iizuka, Gen Masumoto, Yuichi Kabaya, Yusuke Kanematsu, Yu Takano
Prediction of Protein Function from Tertiary Structure of the Active Site in Heme Proteins by Convolutional Neural Network. Biomolecules 13 (1) (2023)
Hiroko X Kondo, Hiroyuki Iizuka, Gen Masumoto, Yuichi Kabaya, Yusuke Kanematsu, Yu Takano
Prediction of Protein Function from Tertiary Structure of the Active Site in Heme Proteins by Convolutional Neural Network. Biomolecules 13 (1) (2023)
Yu Takano, Hiroko X Kondo, Haruki Nakamura
Quantum chemical studies on hydrogen bonds in helical secondary structures. Biophysical reviews 14 (6) (2023)
Yusuke Kanematsu, Hiroko X Kondo, Yu Takano
Computational Exploration of Minimum Energy Reaction Pathway of N 2 O Formation from Intermediate I of P450nor Using an Active Center Model. International journal of molecular sciences 24 (24) (2023)
Hiroko X Kondo, Hiroyuki Iizuka, Gen Masumoto, Yuichi Kabaya, Yusuke Kanematsu, Yu Takano
Elucidation of the Correlation between Heme Distortion and Tertiary Structure of the Heme-Binding Pocket Using a Convolutional Neural Network. Biomolecules 12 (9) (2022)
Hiroko X Kondo, Haruki Nakamura, Yu Takano
Depolarizing Effects in Hydrogen Bond Energy in 3 10 -Helices Revealed by Quantum Chemical Analysis. International journal of molecular sciences 23 (16) (2022)
Tomoki Nakayoshi, Yusuke Ohnishi, Hideaki Tanaka, Genji Kurisu, Hiroko X Kondo, Yu Takano
Effects of Active-Center Reduction of Plant-Type Ferredoxin on Its Structure and Dynamics: Computational Analysis Using Molecular Dynamics Simulations. International journal of molecular sciences 23 (24) (2022)
Tomoki Nakayoshi, Yusuke Ohnishi, Hideaki Tanaka, Genji Kurisu, Hiroko X Kondo, Yu Takano
Effects of Active-Center Reduction of Plant-Type Ferredoxin on Its Structure and Dynamics: Computational Analysis Using Molecular Dynamics Simulations. International journal of molecular sciences 23 (24) (2022)
Tomoki Nakayoshi, Yusuke Ohnishi, Hideaki Tanaka, Genji Kurisu, Hiroko X Kondo, Yu Takano
Effects of Active-Center Reduction of Plant-Type Ferredoxin on Its Structure and Dynamics: Computational Analysis Using Molecular Dynamics Simulations. International journal of molecular sciences 23 (24) (2022)
Hiroko X Kondo, Yu Takano
Analysis of Fluctuation in the Heme-Binding Pocket and Heme Distortion in Hemoglobin and Myoglobin. Life (Basel, Switzerland) 12 (2) (2022)
Tomoki Nakayoshi, Yusuke Ohnishi, Hideaki Tanaka, Genji Kurisu, Hiroko X Kondo, Yu Takano
Effects of Active-Center Reduction of Plant-Type Ferredoxin on Its Structure and Dynamics: Computational Analysis Using Molecular Dynamics Simulations. International journal of molecular sciences 23 (24) (2022)
Hiroko X Kondo, Masanori Fujii, Takuma Tanioka, Yusuke Kanematsu, Takashi Yoshida, Yu Takano
Global Analysis of Heme Proteins Elucidates the Correlation between Heme Distortion and the Heme-Binding Pocket. Journal of chemical information and modeling 62 (4) (2022)
Hiroko X Kondo, Ayumi Kusaka, Colin K Kitakawa, Jinta Onari, Shusuke Yamanaka, Haruki Nakamura, Yu Takano
Hydrogen bond donors and acceptors are generally depolarized in α-helices as revealed by a molecular tailoring approach. Journal of computational chemistry 40 (23) (2019)
Hiroko X Kondo, Ryo Kiribayashi, Daisuke Kuroda, Jiro Kohda, Akimitsu Kugimiya, Yasuhisa Nakano, Kouhei Tsumoto, Yu Takano
Effects of a remote mutation from the contact paratope on the structure of CDR-H3 in the anti-HIV neutralizing antibody PG16. Scientific reports 9 (1) (2019)
Hiroko X Kondo, Norio Yoshida, Matsuyuki Shirota, Kengo Kinoshita
Molecular Mechanism of Depolarization-Dependent Inactivation in W366F Mutant of Kv1.2. The journal of physical chemistry. B 122 (48) (2018)