Daisuke Kuroda

Scopus Author ID Researcher Name Resolver ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 22

Top Venues

Scientific reports

ACS nano

Communications biology

Journal of the American Chemical Society

The University of Tokyo

This page only lists publications with an associated author ORCID identifier.

Affiliation History

The University of Tokyo Apr 01 2019

Japan

Lecturer/Senior Assistant Professor :: Medical Device Development and Regulation Research Center, School of Engineering

Publications

Jumpei Norimatsu, Hayato L Mizuno, Takayoshi Watanabe, Takumi Obara, Makoto Nakakido, Kouhei Tsumoto, Horacio Cabral, Daisuke Kuroda, Yasutaka Anraku
Triphenylphosphonium-modified catiomers enhance in vivo mRNA delivery through stabilized polyion complexation. Materials horizons (2024)
Saya Moriyama, Yuki Anraku, Shunta Taminishi, Yu Adachi, Daisuke Kuroda, Shunsuke Kita, Yusuke Higuchi, Yuhei Kirita, Ryutaro Kotaki, Keisuke Tonouchi, Kohei Yumoto, Tateki Suzuki, Taiyou Someya, Hideo Fukuhara, Yudai Kuroda, Tsukasa Yamamoto, Taishi Onodera, Shuetsu Fukushi, Ken Maeda, Fukumi Nakamura-Uchiyama, Takao Hashiguchi, Atsushi Hoshino, Katsumi Maenaka, Yoshimasa Takahashi
Structural delineation and computational design of SARS-CoV-2-neutralizing antibodies against Omicron subvariants. Nature communications 14 (1) (2023)
Hanrui Liu, Toni A Baeumler, Kai Nakamura, Yuga Okada, Seojung Cho, Akihiro Eguchi, Daisuke Kuroda, Kouhei Tsumoto, Ryosuke Ueki, Shinsuke Sando
An Engineered Synthetic Receptor-Aptamer Pair for an Artificial Signal Transduction System. ACS nano (2023)
Hanrui Liu, Toni A Baeumler, Kai Nakamura, Yuga Okada, Seojung Cho, Akihiro Eguchi, Daisuke Kuroda, Kouhei Tsumoto, Ryosuke Ueki, Shinsuke Sando
An Engineered Synthetic Receptor-Aptamer Pair for an Artificial Signal Transduction System. ACS nano 17 (10) (2023)
Jungyeon Kim, Hiroka Kobayashi, Marin Yokomine, Yota Shiratori, Takumi Ueda, Koh Takeuchi, Koji Umezawa, Daisuke Kuroda, Kouhei Tsumoto, Jumpei Morimoto, Shinsuke Sando
Residue-based program of a β-peptoid twisted strand shape via a cyclopentane constraint. Organic & biomolecular chemistry 20 (35) (2022)
Ayana Isobe, Yasuha Arai, Daisuke Kuroda, Nobuaki Okumura, Takao Ono, Shota Ushiba, Shin-Ichi Nakakita, Tomo Daidoji, Yasuo Suzuki, Takaaki Nakaya, Kazuhiko Matsumoto, Yohei Watanabe
ACE2 N-glycosylation modulates interactions with SARS-CoV-2 spike protein in a site-specific manner. Communications biology 5 (1) (2022)
Rahul Khetan, Robin A Curtis, Charlotte M Deane, Johannes Thorling Hadsund, Uddipan Kar, Konrad Krawczyk, Daisuke Kuroda, Sarah A Robinson, Pietro Sormanni, Kouhei Tsumoto, Jim Warwicker, Andrew C R Martin
Current advances in biopharmaceutical informatics: guidelines, impact and challenges in the computational developability assessment of antibody therapeutics. mAbs 14 (1) (2022)
Marin Yokomine, Jumpei Morimoto, Yasuhiro Fukuda, Yota Shiratori, Daisuke Kuroda, Takumi Ueda, Koh Takeuchi, Kouhei Tsumoto, Shinsuke Sando
Oligo(N-methylalanine) as a Peptide-Based Molecular Scaffold with a Minimal Structure and High Density of Functionalizable Sites. Angewandte Chemie (International ed. in English) 61 (14) (2022)
Akinobu Senoo, Sho Ito, Satoru Nagatoishi, Yutaro Saito, Go Ueno, Daisuke Kuroda, Kouhei Yoshida, Takumi Tashima, Shota Kudo, Shinsuke Sando, Kouhei Tsumoto
Regulation of cadherin dimerization by chemical fragments as a trigger to inhibit cell adhesion. Communications biology 4 (1) (2021)
Chihoko Yoshimura, Satoru Nagatoishi, Daisuke Kuroda, Yasuo Kodama, Takao Uno, Makoto Kitade, Khoontee Chong-Takata, Hiromi Oshiumi, Hiromi Muraoka, Satoshi Yamashita, Yuichi Kawai, Shuichi Ohkubo, Kouhei Tsumoto
Thermodynamic Dissection of Potency and Selectivity of Cytosolic Hsp90 Inhibitors. Journal of medicinal chemistry 64 (5) (2021)
Yasuhiro Fukuda, Marin Yokomine, Daisuke Kuroda, Kouhei Tsumoto, Jumpei Morimoto, Shinsuke Sando
Peptoid-based reprogrammable template for cell-permeable inhibitors of protein-protein interactions. Chemical science 12 (40) (2021)
Jumpei Morimoto, Jungyeon Kim, Daisuke Kuroda, Satoru Nagatoishi, Kouhei Tsumoto, Shinsuke Sando
Per-Residue Program of Multiple Backbone Dihedral Angles of β-Peptoids via Backbone Substitutions. Journal of the American Chemical Society 142 (5) (2020)
Julia Koehler Leman, Brian D Weitzner, Steven M Lewis, Jared Adolf-Bryfogle, Nawsad Alam, Rebecca F Alford, Melanie Aprahamian, Julien S Baker, Kyle A Barlow, Patrick Barth, Benjamin Basanta, Brian J Bender, Kristin Blacklock, Jaume Bonet, Scott E Boyken, Philip G Bradley, Chris Bystroff, Patrick Conway, Seth Cooper, Bruno E Correia, Brian Coventry, Rachel J Hagey, René M De Jong, Frank DiMaio, Lorna Dsilva, Roland L Dunbrack, Alexander S Ford, Brandon Frenz, Darwin Y Fu, Caleb Geniesse, Lukasz Goldschmidt, Ragul Gowthaman, Jeffrey J Gray, Dominik Gront, Sharon Guffy, Scott Horowitz, Po-Ssu Huang, Thomas Huber, Tim M Jacobs, Jeliazko R Jeliazkov, David K Johnson, Kalli Kappel, John Karanicolas, Hamed Khakzad, Karen R Khar, Sagar D Khare, Firas Khatib, Alisa Khramushin, Indigo C King, Robert Kleffner, Brian Koepnick, Tanja Kortemme, Georg Kuenze, Brian Kuhlman, Daisuke Kuroda, Jason W Labonte, Jason K Lai, Gideon Lapidoth, Andrew Leaver-Fay, Steffen Lindert, Thomas Linsky, Nir London, Joseph H Lubin, Sergey Lyskov, Jack Maguire, Lars Malmström, Enrique Marcos, Orly Marcu, Nicholas A Marze, Jens Meiler, Rocco Moretti, Vikram Khipple Mulligan, Santrupti Nerli, Christoffer Norn, Shane Ó'Conchúir, Noah Ollikainen, Sergey Ovchinnikov, Michael S Pacella, Xingjie Pan, Hahnbeom Park, Ryan E Pavlovicz, Manasi Pethe, Brian G Pierce, Kala Bharath Pilla, Barak Raveh, P Douglas Renfrew, Shourya S Roy Burman, Aliza Rubenstein, Marion F Sauer, Andreas Scheck, William R Schief, Ora Schueler-Furman, Yuval Sedan, Alexander M Sevy, Nikolaos G Sgourakis, Lei Shi, Justin B Siegel, Daniel-Adriano Silva, Shannon Smith, Yifan Song, Amelie Stein, Maria Szegedy, Frank D Teets, Summer B Thyme, Ray Yu-Ruei Wang, Andrew Watkins, Lior Zimmerman, Richard A Bonneau
Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature methods 17 (7) (2020)
Kouhei Yoshida, Satoru Nagatoishi, Daisuke Kuroda, Nanao Suzuki, Takeshi Murata, Kouhei Tsumoto
Phospholipid Membrane Fluidity Alters Ligand Binding Activity of a G Protein-Coupled Receptor by Shifting the Conformational Equilibrium. Biochemistry 58 (6) (2019)
Kouhei Yoshida, Daisuke Kuroda, Masato Kiyoshi, Makoto Nakakido, Satoru Nagatoishi, Shinji Soga, Hiroki Shirai, Kouhei Tsumoto
Exploring designability of electrostatic complementarity at an antigen-antibody interface directed by mutagenesis, biophysical analysis, and molecular dynamics simulations. Scientific reports 9 (1) (2019)
Jumpei Morimoto, Yasuhiro Fukuda, Daisuke Kuroda, Takumu Watanabe, Fumihiko Yoshida, Mizue Asada, Toshikazu Nakamura, Akinobu Senoo, Satoru Nagatoishi, Kouhei Tsumoto, Shinsuke Sando
A Peptoid with Extended Shape in Water. Journal of the American Chemical Society 141 (37) (2019)
Akihiro Eguchi, Makoto Nakakido, Satoru Nagatoishi, Daisuke Kuroda, Kouhei Tsumoto, Teruyuki Nagamune, Masahiro Kawahara
An epitope-directed antibody affinity maturation system utilizing mammalian cell survival as readout. Biotechnology and bioengineering 116 (7) (2019)
Raiji Kawade, Daisuke Kuroda, Kouhei Tsumoto
How the protonation state of a phosphorylated amino acid governs molecular recognition: insights from classical molecular dynamics simulations. FEBS letters 594 (5) (2019)
Hiroko X Kondo, Ryo Kiribayashi, Daisuke Kuroda, Jiro Kohda, Akimitsu Kugimiya, Yasuhisa Nakano, Kouhei Tsumoto, Yu Takano
Effects of a remote mutation from the contact paratope on the structure of CDR-H3 in the anti-HIV neutralizing antibody PG16. Scientific reports 9 (1) (2019)
Tomoya Takahashi, Satoru Nagatoishi, Daisuke Kuroda, Kouhei Tsumoto
Thermodynamic and computational analyses reveal the functional roles of the galloyl group of tea catechins in molecular recognition. PloS one 13 (10) (2018)
Masato Kiyoshi, José M M Caaveiro, Minoru Tada, Hiroko Tamura, Toru Tanaka, Yosuke Terao, Koldo Morante, Akira Harazono, Noritaka Hashii, Hiroko Shibata, Daisuke Kuroda, Satoru Nagatoishi, Seigo Oe, Teruhiko Ide, Kouhei Tsumoto, Akiko Ishii-Watabe
Assessing the Heterogeneity of the Fc-Glycan of a Therapeutic Antibody Using an engineered FcγReceptor IIIa-Immobilized Column. Scientific reports 8 (1) (2018)
Takao Hashiguchi, Yoshinari Fukuda, Rei Matsuoka, Daisuke Kuroda, Marie Kubota, Yuta Shirogane, Shumpei Watanabe, Kouhei Tsumoto, Daisuke Kohda, Richard Karl Plemper, Yusuke Yanagi
Structures of the prefusion form of measles virus fusion protein in complex with inhibitors. Proceedings of the National Academy of Sciences of the United States of America 115 (10) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Daisuke Kuroda