Ilya J Finkelstein (Ilya Finkelstein)

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 53

Top Venues

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

eLife

Science (New York, N.Y.)

The University of Texas at Austin

This page only lists publications with an associated author ORCID identifier.

Affiliation History

The University of Texas at Austin Aug 01 2012

United States

Associate Professor :: Molecular Biosciences

Publications

Pedro Leão, Mary E Little, Kathryn E Appler, Daphne Sahaya, Emily Aguilar-Pine, Kathryn Currie, Ilya J Finkelstein, Valerie De Anda, Brett J Baker
Asgard archaea defense systems and their roles in the origin of eukaryotic immunity. Nature communications 15 (1) (2024)
Hung-Che Kuo, Joshua Prupes, Chia-Wei Chou, Ilya J Finkelstein
Massively parallel profiling of RNA-targeting CRISPR-Cas13d. Nature communications 15 (1) (2024)
Hung-Che Kuo, Joshua Prupes, Chia-Wei Chou, Ilya J Finkelstein
Massively parallel profiling of RNA-targeting CRISPR-Cas13d. Nature communications 15 (1) (2024)
Grace N Hibshman, Jack P K Bravo, Matthew M Hooper, Tyler L Dangerfield, Hongshan Zhang, Ilya J Finkelstein, Kenneth A Johnson, David W Taylor
Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9. Nature communications 15 (1) (2024)
Kuang Hu, Chia-Wei Chou, Claus O Wilke, Ilya J Finkelstein
Distinct horizontal transfer mechanisms for type I and type V CRISPR-associated transposons. Nature communications 15 (1) (2024)
Hung-Che Kuo, Joshua Prupes, Chia-Wei Chou, Ilya J Finkelstein
Massively parallel profiling of RNA-targeting CRISPR-Cas13d. Nature communications 15 (1) (2024)
Grace N Hibshman, Jack P K Bravo, Matthew M Hooper, Tyler L Dangerfield, Hongshan Zhang, Ilya J Finkelstein, Kenneth A Johnson, David W Taylor
Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9. Nature communications 15 (1) (2024)
Kuang Hu, Chia-Wei Chou, Claus O Wilke, Ilya J Finkelstein
Distinct horizontal transfer mechanisms for type I and type V CRISPR-associated transposons. Nature communications 15 (1) (2024)
Hung-Che Kuo, Joshua Prupes, Chia-Wei Chou, Ilya J Finkelstein
Massively parallel profiling of RNA-targeting CRISPR-Cas13d. Nature communications 15 (1) (2024)
Pedro Leão, Mary E Little, Kathryn E Appler, Daphne Sahaya, Emily Aguilar-Pine, Kathryn Currie, Ilya J Finkelstein, Valerie De Anda, Brett J Baker
Asgard archaea defense systems and their roles in the origin of eukaryotic immunity. Nature communications 15 (1) (2024)
Kuang Hu, Chia-Wei Chou, Claus O Wilke, Ilya J Finkelstein
Distinct horizontal transfer mechanisms for type I and type V CRISPR-associated transposons. Nature communications 15 (1) (2024)
Grace N Hibshman, Jack P K Bravo, Matthew M Hooper, Tyler L Dangerfield, Hongshan Zhang, Ilya J Finkelstein, Kenneth A Johnson, David W Taylor
Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9. Nature communications 15 (1) (2024)
Hung-Che Kuo, Joshua Prupes, Chia-Wei Chou, Ilya J Finkelstein
Massively parallel profiling of RNA-targeting CRISPR-Cas13d. Nature communications 15 (1) (2024)
Kuang Hu, Chia-Wei Chou, Claus O Wilke, Ilya J Finkelstein
Distinct horizontal transfer mechanisms for type I and type V CRISPR-associated transposons. Nature communications 15 (1) (2024)
Pedro Leão, Mary E Little, Kathryn E Appler, Daphne Sahaya, Emily Aguilar-Pine, Kathryn Currie, Ilya J Finkelstein, Valerie De Anda, Brett J Baker
Asgard archaea defense systems and their roles in the origin of eukaryotic immunity. Nature communications 15 (1) (2024)
Hung-Che Kuo, Joshua Prupes, Chia-Wei Chou, Ilya J Finkelstein
Massively parallel profiling of RNA-targeting CRISPR-Cas13d. Nature communications 15 (1) (2024)
Bryan A Gibson, Claudia Blaukopf, Tracy Lou, Lifeng Chen, Lynda K Doolittle, Ilya J Finkelstein, Geeta J Narlikar, Daniel W Gerlich, Michael K Rosen
In diverse conditions, intrinsic chromatin condensates have liquid-like material properties. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Bryan A Gibson, Claudia Blaukopf, Tracy Lou, Lifeng Chen, Lynda K Doolittle, Ilya J Finkelstein, Geeta J Narlikar, Daniel W Gerlich, Michael K Rosen
In diverse conditions, intrinsic chromatin condensates have liquid-like material properties. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Bryan A Gibson, Claudia Blaukopf, Tracy Lou, Lifeng Chen, Lynda K Doolittle, Ilya J Finkelstein, Geeta J Narlikar, Daniel W Gerlich, Michael K Rosen
In diverse conditions, intrinsic chromatin condensates have liquid-like material properties. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Bryan A Gibson, Claudia Blaukopf, Tracy Lou, Lifeng Chen, Lynda K Doolittle, Ilya J Finkelstein, Geeta J Narlikar, Daniel W Gerlich, Michael K Rosen
In diverse conditions, intrinsic chromatin condensates have liquid-like material properties. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Hung-Che Kuo, Joshua Prupes, Chia-Wei Chou, Ilya J Finkelstein
Massively Parallel Profiling of RNA-targeting CRISPR-Cas13d. bioRxiv : the preprint server for biology (2023)
Bryan A Gibson, Claudia Blaukopf, Tracy Lou, Lifeng Chen, Lynda K Doolittle, Ilya J Finkelstein, Geeta J Narlikar, Daniel W Gerlich, Michael K Rosen
In diverse conditions, intrinsic chromatin condensates have liquid-like material properties. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Bryan A Gibson, Claudia Blaukopf, Tracy Lou, Lifeng Chen, Lynda K Doolittle, Ilya J Finkelstein, Geeta J Narlikar, Daniel W Gerlich, Michael K Rosen
In diverse conditions, intrinsic chromatin condensates have liquid-like material properties. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Kuang Hu, Chia-Wei Chou, Claus O Wilke, Ilya J Finkelstein
Distinct horizontal transfer mechanisms for type I and type V CRISPR-associated transposons. bioRxiv : the preprint server for biology (2023)
Bryan A Gibson, Claudia Blaukopf, Tracy Lou, Lifeng Chen, Lynda K Doolittle, Ilya J Finkelstein, Geeta J Narlikar, Daniel W Gerlich, Michael K Rosen
In diverse conditions, intrinsic chromatin condensates have liquid-like material properties. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Bryan A Gibson, Claudia Blaukopf, Tracy Lou, Lifeng Chen, Lynda K Doolittle, Ilya J Finkelstein, Geeta J Narlikar, Daniel W Gerlich, Michael K Rosen
In diverse conditions, intrinsic chromatin condensates have liquid-like material properties. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Bryan A Gibson, Claudia Blaukopf, Tracy Lou, Lifeng Chen, Lynda K Doolittle, Ilya J Finkelstein, Geeta J Narlikar, Daniel W Gerlich, Michael K Rosen
In diverse conditions, intrinsic chromatin condensates have liquid-like material properties. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Behrouz Eslami-Mossallam, Misha Klein, Constantijn V D Smagt, Koen V D Sanden, Stephen K Jones, John A Hawkins, Ilya J Finkelstein, Martin Depken
A kinetic model predicts SpCas9 activity, improves off-target classification, and reveals the physical basis of targeting fidelity. Nature communications 13 (1) (2022)
James R Rybarski, Kuang Hu, Alexis M Hill, Claus O Wilke, Ilya J Finkelstein
Metagenomic discovery of CRISPR-associated transposons. Proceedings of the National Academy of Sciences of the United States of America 118 (49) (2022)
Jeffrey M Schaub, Michael M Soniat, Ilya J Finkelstein
Polymerase theta-helicase promotes end joining by stripping single-stranded DNA-binding proteins and bridging DNA ends. Nucleic acids research 50 (7) (2022)
William N Voss, Yixuan J Hou, Nicole V Johnson, George Delidakis, Jin Eyun Kim, Kamyab Javanmardi, Andrew P Horton, Foteini Bartzoka, Chelsea J Paresi, Yuri Tanno, Chia-Wei Chou, Shawn A Abbasi, Whitney Pickens, Katia George, Daniel R Boutz, Dalton M Towers, Jonathan R McDaniel, Daniel Billick, Jule Goike, Lori A Rowe, Dhwani Batra, Jan Pohl, Justin Lee, Shivaprakash Gangappa, Suryaprakash Sambhara, Michelle V Gadush, Nianshuang Wang, Maria D Person, Brent L Iverson, Jimmy D Gollihar, John M Dye, Andrew S Herbert, Ilya J Finkelstein, Ralph S Baric, Jason S Mclellan, George Georgiou, Jason J Lavinder, Gregory C Ippolito
Prevalent, protective, and convergent IgG recognition of SARS-CoV-2 non-RBD spike epitopes. Science (New York, N.Y.) 372 (6546) (2021)
Isabel Strohkendl, Fatema A Saifuddin, Bryan A Gibson, Michael K Rosen, Rick Russell, Ilya J Finkelstein
Inhibition of CRISPR-Cas12a DNA targeting by nucleosomes and chromatin. Science advances 7 (11) (2021)
Jeffrey M Schaub, Chia-Wei Chou, Hung-Che Kuo, Kamyab Javanmardi, Ching-Lin Hsieh, Jory Goldsmith, Andrea M DiVenere, Kevin-Phu C Le, Daniel Wrapp, Patrick O Byrne, Christy K Hjorth, Nicole V Johnson, John Ludes-Meyers, Annalee W Nguyen, Nianshuang Wang, Jason J Lavinder, Gregory C Ippolito, Jennifer A Maynard, Jason S Mclellan, Ilya J Finkelstein
Expression and characterization of SARS-CoV-2 spike proteins. Nature protocols 16 (11) (2021)
Molly S Blevins, Jada N Walker, Jeffrey M Schaub, Ilya J Finkelstein, Jennifer S Brodbelt
Characterization of the T4 gp32-ssDNA complex by native, cross-linking, and ultraviolet photodissociation mass spectrometry. Chemical science 12 (41) (2021)
Carlos Calcines-Cruz, Ilya J Finkelstein, Armando Hernández Garcia
CRISPR-Guided Programmable Self-Assembly of Artificial Virus-Like Nucleocapsids. Nano letters 21 (7) (2021)
Chien-Hui Ma, Kamyab Javanmardi, Ilya J Finkelstein, Makkuni Jayaram
Disintegration promotes protospacer integration by the Cas1-Cas2 complex. eLife 10 (2021)
Corey Frazer, Mae I Staples, Yoori Kim, Matthew Hirakawa, Maureen A Dowell, Nicole V Johnson, Aaron D Hernday, Veronica H Ryan, Nicolas L Fawzi, Ilya J Finkelstein, Richard J Bennett
Epigenetic cell fate in Candida albicans is controlled by transcription factor condensates acting at super-enhancer-like elements. Nature microbiology 5 (11) (2020)
Ching-Lin Hsieh, Jory A Goldsmith, Jeffrey M Schaub, Andrea M DiVenere, Hung-Che Kuo, Kamyab Javanmardi, Kevin-Phu C Le, Daniel Wrapp, Alison G Lee, Yutong Liu, Chia-Wei Chou, Patrick O Byrne, Christy K Hjorth, Nicole V Johnson, John Ludes-Meyers, Annalee W Nguyen, Juyeon Park, Nianshuang Wang, Dzifa Amengor, Jason J Lavinder, Gregory C Ippolito, Jennifer A Maynard, Ilya J Finkelstein, Jason S Mclellan
Structure-based design of prefusion-stabilized SARS-CoV-2 spikes. Science (New York, N.Y.) 369 (6510) (2020)
Stephen K Jones, John A Hawkins, Nicole V Johnson, Cheulhee Jung, Kuang Hu, James R Rybarski, Janice S Chen, Jennifer A Doudna, William H Press, Ilya J Finkelstein
Massively parallel kinetic profiling of natural and engineered CRISPR nucleases. Nature biotechnology 39 (1) (2020)
William H Press, John A Hawkins, Stephen K Jones, Jeffrey M Schaub, Ilya J Finkelstein
HEDGES error-correcting code for DNA storage corrects indels and allows sequence constraints. Proceedings of the National Academy of Sciences of the United States of America 117 (31) (2020)
Scott Wesley Long, Randall J Olsen, Paul A Christensen, David W Bernard, James J Davis, Maulik Shukla, Marcus Nguyen, Matthew Ojeda Saavedra, Prasanti Yerramilli, Layne Pruitt, Sishir Subedi, Hung-Che Kuo, Heather Hendrickson, Ghazaleh Eskandari, Hoang A T Nguyen, J Hunter Long, Muthiah Kumaraswami, Jule Goike, Daniel Boutz, Jimmy Gollihar, Jason S Mclellan, Chia-Wei Chou, Kamyab Javanmardi, Ilya J Finkelstein, James M Musser
Molecular Architecture of Early Dissemination and Massive Second Wave of the SARS-CoV-2 Virus in a Major Metropolitan Area. mBio 11 (6) (2020)
Rajashree A Deshpande, Logan R Myler, Michael M Soniat, Nodar Makharashvili, Linda Lee, Susan P Lees-Miller, Ilya J Finkelstein, Tanya T Paull
DNA-dependent protein kinase promotes DNA end processing by MRN and CtIP. Science advances 6 (2) (2020)
Yoori Kim, Zhubing Shi, Hongshan Zhang, Ilya J Finkelstein, Hongtao Yu
Human cohesin compacts DNA by loop extrusion. Science (New York, N.Y.) 366 (6471) (2019)
Marie-Christine Caron, Ajit K Sharma, Julia O'Sullivan, Logan R Myler, Maria Tedim Ferreira, Amélie Rodrigue, Yan Coulombe, Chantal Ethier, Jean-Philippe Gagné, Marie-France Langelier, John M Pascal, Ilya J Finkelstein, Michael J Hendzel, Guy G Poirier, Jean-Yves Masson
Poly(ADP-ribose) polymerase-1 antagonizes DNA resection at double-strand breaks. Nature communications 10 (1) (2019)
Kevin J Forsberg, Ishan V Bhatt, Danica T Schmidtke, Kamyab Javanmardi, Kaylee E Dillard, Barry L Stoddard, Ilya J Finkelstein, Brett K Kaiser, Harmit Singh Malik
Functional metagenomics-guided discovery of potent Cas9 inhibitors in the human microbiome. eLife 8 (2019)
R A Greenstein, Stephen K Jones, Eric C Spivey, James R Rybarski, Ilya J Finkelstein, Bassem Al-Sady
Noncoding RNA-nucleated heterochromatin spreading is intrinsically labile and requires accessory elements for epigenetic stability. eLife 7 (2018)
Jeffrey M Schaub, Hongshan Zhang, Michael M Soniat, Ilya J Finkelstein
Assessing Protein Dynamics on Low-Complexity Single-Stranded DNA Curtains. Langmuir : the ACS journal of surfaces and colloids 34 (49) (2018)
Sudipta Bhattacharyya, Michael M Soniat, David Walker, Sooin Jang, Ilya J Finkelstein, Rasika M Harshey
Phage Mu Gam protein promotes NHEJ in concert with Escherichia coli ligase. Proceedings of the National Academy of Sciences of the United States of America 115 (50) (2018)
John A Hawkins, Stephen K Jones, Ilya J Finkelstein, William H Press
Indel-correcting DNA barcodes for high-throughput sequencing. Proceedings of the National Academy of Sciences of the United States of America 115 (27) (2018)
Ja-Hwan Seol, Cory Holland, Xiaolei Li, Christopher Kim, Fuyang Li, Melisa Medina-Rivera, Robin Eichmiller, Ignacio F Gallardo, Ilya J Finkelstein, Paul Hasty, Eun Yong Shim, Jennifer A Surtees, Sang Eun Lee
Distinct roles of XPF-ERCC1 and Rad1-Rad10-Saw1 in replication-coupled and uncoupled inter-strand crosslink repair. Nature communications 9 (1) (2018)
Yoori Kim, Armando de la Torre, Andrew A Leal, Ilya J Finkelstein
Efficient modification of λ-DNA substrates for single-molecule studies. Scientific reports 7 (1) (2017)
Eric C Spivey, Stephen K Jones, James R Rybarski, Fatema A Saifuddin, Ilya J Finkelstein
An aging-independent replicative lifespan in a symmetrically dividing eukaryote. eLife 6 (2017)
Logan R Myler, Ignacio F Gallardo, Yi Zhou, Fade Gong, Soo-Hyun Yang, Marc S Wold, Kyle M Miller, Tanya T Paull, Ilya J Finkelstein
Single-molecule imaging reveals the mechanism of Exo1 regulation by single-stranded DNA binding proteins. Proceedings of the National Academy of Sciences of the United States of America 113 (9) (2016)

Ilya J Finkelstein.css-eqlu8i{font-size:small;padding-left:4px;} (Ilya Finkelstein)

Publication Activity (10 Years)

Top Topics

Top Venues

Ilya J Finkelstein (Ilya Finkelstein)